data_3DAG
#
_model_server_result.job_id            WwZTpgs85ox3YodHeRSzFQ 
_model_server_result.datetime_utc      '2024-11-07 01:33:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dag 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    3DAG 
#
_exptl.entry_id    3DAG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              28.01 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CARBON MONOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DAG 
_cell.length_a            95.93 
_cell.length_b            95.93 
_cell.length_c            165.81 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DAG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 176 A CYS 176 1_555 B FE FE2 . A FE2 503 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc2 C N1 FEG . A FEG 501 1_555 B FE FE2 . A FE2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc3 D C CMO . A CMO 502 1_555 B FE FE2 . A FE2 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
metalc ? metalc4 B FE FE2 . A FE2 503 1_555 E C CMO . A CMO 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
metalc ? metalc5 B FE FE2 . A FE2 503 1_555 F O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
#
_chem_comp.formula           'C O' 
_chem_comp.formula_weight    28.01 
_chem_comp.id                CMO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CARBON MONOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             O 
_chem_comp_bond.comp_id               CMO 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          70 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     3DAG 
_atom_sites.fract_transf_matrix[1][1]    0.010424 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010424 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006031 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 503 503 FE2 FE2 . 
C 3 FEG A 1 501 501 FEG FEG . 
D 4 CMO A 1 502 502 CMO CMO . 
E 4 CMO A 1 504 504 CMO CMO . 
F 5 HOH A 1 805 805 HOH HOH . 
F 5 HOH A 2 806 502 HOH HOH . 
F 5 HOH A 3 807 503 HOH HOH . 
F 5 HOH A 4 808 504 HOH HOH . 
F 5 HOH A 5 809 505 HOH HOH . 
F 5 HOH A 6 810 506 HOH HOH . 
F 5 HOH A 7 811 507 HOH HOH . 
F 5 HOH A 8 812 508 HOH HOH . 
F 5 HOH A 9 813 509 HOH HOH . 
F 5 HOH A 10 814 510 HOH HOH . 
F 5 HOH A 11 815 511 HOH HOH . 
F 5 HOH A 12 816 512 HOH HOH . 
F 5 HOH A 13 817 513 HOH HOH . 
F 5 HOH A 14 818 514 HOH HOH . 
F 5 HOH A 15 819 515 HOH HOH . 
F 5 HOH A 16 820 516 HOH HOH . 
F 5 HOH A 17 821 517 HOH HOH . 
F 5 HOH A 18 822 518 HOH HOH . 
F 5 HOH A 19 823 519 HOH HOH . 
F 5 HOH A 20 824 520 HOH HOH . 
F 5 HOH A 21 825 521 HOH HOH . 
F 5 HOH A 22 826 522 HOH HOH . 
F 5 HOH A 23 827 523 HOH HOH . 
F 5 HOH A 24 828 524 HOH HOH . 
F 5 HOH A 25 829 525 HOH HOH . 
F 5 HOH A 26 830 526 HOH HOH . 
F 5 HOH A 27 831 527 HOH HOH . 
F 5 HOH A 28 832 528 HOH HOH . 
F 5 HOH A 29 833 529 HOH HOH . 
F 5 HOH A 30 834 530 HOH HOH . 
F 5 HOH A 31 835 531 HOH HOH . 
F 5 HOH A 32 836 532 HOH HOH . 
F 5 HOH A 33 837 533 HOH HOH . 
F 5 HOH A 34 838 534 HOH HOH . 
F 5 HOH A 35 839 535 HOH HOH . 
F 5 HOH A 36 840 536 HOH HOH . 
F 5 HOH A 37 841 537 HOH HOH . 
F 5 HOH A 38 842 538 HOH HOH . 
F 5 HOH A 39 843 539 HOH HOH . 
F 5 HOH A 40 844 540 HOH HOH . 
F 5 HOH A 41 845 541 HOH HOH . 
F 5 HOH A 42 846 542 HOH HOH . 
F 5 HOH A 43 847 543 HOH HOH . 
F 5 HOH A 44 848 544 HOH HOH . 
F 5 HOH A 45 849 545 HOH HOH . 
F 5 HOH A 46 850 546 HOH HOH . 
F 5 HOH A 47 851 547 HOH HOH . 
F 5 HOH A 48 852 548 HOH HOH . 
F 5 HOH A 49 853 549 HOH HOH . 
F 5 HOH A 50 854 550 HOH HOH . 
F 5 HOH A 51 855 551 HOH HOH . 
F 5 HOH A 52 856 552 HOH HOH . 
F 5 HOH A 53 857 553 HOH HOH . 
F 5 HOH A 54 858 554 HOH HOH . 
F 5 HOH A 55 859 555 HOH HOH . 
F 5 HOH A 56 860 556 HOH HOH . 
F 5 HOH A 57 861 557 HOH HOH . 
F 5 HOH A 58 862 558 HOH HOH . 
F 5 HOH A 59 863 559 HOH HOH . 
F 5 HOH A 60 864 560 HOH HOH . 
F 5 HOH A 61 865 561 HOH HOH . 
F 5 HOH A 62 866 562 HOH HOH . 
F 5 HOH A 63 867 563 HOH HOH . 
F 5 HOH A 64 868 564 HOH HOH . 
F 5 HOH A 65 869 565 HOH HOH . 
F 5 HOH A 66 870 566 HOH HOH . 
F 5 HOH A 67 871 567 HOH HOH . 
F 5 HOH A 68 872 568 HOH HOH . 
F 5 HOH A 69 873 569 HOH HOH . 
F 5 HOH A 70 874 570 HOH HOH . 
F 5 HOH A 71 875 571 HOH HOH . 
F 5 HOH A 72 876 572 HOH HOH . 
F 5 HOH A 73 877 573 HOH HOH . 
F 5 HOH A 74 878 574 HOH HOH . 
F 5 HOH A 75 879 575 HOH HOH . 
F 5 HOH A 76 880 576 HOH HOH . 
F 5 HOH A 77 881 577 HOH HOH . 
F 5 HOH A 78 882 578 HOH HOH . 
F 5 HOH A 79 883 579 HOH HOH . 
F 5 HOH A 80 884 580 HOH HOH . 
F 5 HOH A 81 885 581 HOH HOH . 
F 5 HOH A 82 886 582 HOH HOH . 
F 5 HOH A 83 887 583 HOH HOH . 
F 5 HOH A 84 888 584 HOH HOH . 
F 5 HOH A 85 889 585 HOH HOH . 
F 5 HOH A 86 890 586 HOH HOH . 
F 5 HOH A 87 891 587 HOH HOH . 
F 5 HOH A 88 892 588 HOH HOH . 
F 5 HOH A 89 893 589 HOH HOH . 
F 5 HOH A 90 894 590 HOH HOH . 
F 5 HOH A 91 895 591 HOH HOH . 
F 5 HOH A 92 896 592 HOH HOH . 
F 5 HOH A 93 897 593 HOH HOH . 
F 5 HOH A 94 898 594 HOH HOH . 
F 5 HOH A 95 899 595 HOH HOH . 
F 5 HOH A 96 900 596 HOH HOH . 
F 5 HOH A 97 901 597 HOH HOH . 
F 5 HOH A 98 902 598 HOH HOH . 
F 5 HOH A 99 903 599 HOH HOH . 
F 5 HOH A 100 904 600 HOH HOH . 
F 5 HOH A 101 905 601 HOH HOH . 
F 5 HOH A 102 906 602 HOH HOH . 
F 5 HOH A 103 907 603 HOH HOH . 
F 5 HOH A 104 908 604 HOH HOH . 
F 5 HOH A 105 909 605 HOH HOH . 
F 5 HOH A 106 910 606 HOH HOH . 
F 5 HOH A 107 911 607 HOH HOH . 
F 5 HOH A 108 912 608 HOH HOH . 
F 5 HOH A 109 913 609 HOH HOH . 
F 5 HOH A 110 914 610 HOH HOH . 
F 5 HOH A 111 915 611 HOH HOH . 
F 5 HOH A 112 916 612 HOH HOH . 
F 5 HOH A 113 917 613 HOH HOH . 
F 5 HOH A 114 918 614 HOH HOH . 
F 5 HOH A 115 919 615 HOH HOH . 
F 5 HOH A 116 920 616 HOH HOH . 
F 5 HOH A 117 921 617 HOH HOH . 
F 5 HOH A 118 922 618 HOH HOH . 
F 5 HOH A 119 923 619 HOH HOH . 
F 5 HOH A 120 924 620 HOH HOH . 
F 5 HOH A 121 925 621 HOH HOH . 
F 5 HOH A 122 926 622 HOH HOH . 
F 5 HOH A 123 927 623 HOH HOH . 
F 5 HOH A 124 928 624 HOH HOH . 
F 5 HOH A 125 929 625 HOH HOH . 
F 5 HOH A 126 930 626 HOH HOH . 
F 5 HOH A 127 931 627 HOH HOH . 
F 5 HOH A 128 932 628 HOH HOH . 
F 5 HOH A 129 933 629 HOH HOH . 
F 5 HOH A 130 934 630 HOH HOH . 
F 5 HOH A 131 935 631 HOH HOH . 
F 5 HOH A 132 936 632 HOH HOH . 
F 5 HOH A 133 937 633 HOH HOH . 
F 5 HOH A 134 938 634 HOH HOH . 
F 5 HOH A 135 939 635 HOH HOH . 
F 5 HOH A 136 940 636 HOH HOH . 
F 5 HOH A 137 941 637 HOH HOH . 
F 5 HOH A 138 942 638 HOH HOH . 
F 5 HOH A 139 943 639 HOH HOH . 
F 5 HOH A 140 944 640 HOH HOH . 
F 5 HOH A 141 945 641 HOH HOH . 
F 5 HOH A 142 946 642 HOH HOH . 
F 5 HOH A 143 947 643 HOH HOH . 
F 5 HOH A 144 948 644 HOH HOH . 
F 5 HOH A 145 949 645 HOH HOH . 
F 5 HOH A 146 950 646 HOH HOH . 
F 5 HOH A 147 951 647 HOH HOH . 
F 5 HOH A 148 952 648 HOH HOH . 
F 5 HOH A 149 953 649 HOH HOH . 
F 5 HOH A 150 954 650 HOH HOH . 
F 5 HOH A 151 955 651 HOH HOH . 
F 5 HOH A 152 956 652 HOH HOH . 
F 5 HOH A 153 957 653 HOH HOH . 
F 5 HOH A 154 958 654 HOH HOH . 
F 5 HOH A 155 959 655 HOH HOH . 
F 5 HOH A 156 960 656 HOH HOH . 
F 5 HOH A 157 961 657 HOH HOH . 
F 5 HOH A 158 962 658 HOH HOH . 
F 5 HOH A 159 963 659 HOH HOH . 
F 5 HOH A 160 964 660 HOH HOH . 
F 5 HOH A 161 965 661 HOH HOH . 
F 5 HOH A 162 966 662 HOH HOH . 
F 5 HOH A 163 967 663 HOH HOH . 
F 5 HOH A 164 968 664 HOH HOH . 
F 5 HOH A 165 969 665 HOH HOH . 
F 5 HOH A 166 970 666 HOH HOH . 
F 5 HOH A 167 971 667 HOH HOH . 
F 5 HOH A 168 972 668 HOH HOH . 
F 5 HOH A 169 973 669 HOH HOH . 
F 5 HOH A 170 974 670 HOH HOH . 
F 5 HOH A 171 975 671 HOH HOH . 
F 5 HOH A 172 976 672 HOH HOH . 
F 5 HOH A 173 977 673 HOH HOH . 
F 5 HOH A 174 978 674 HOH HOH . 
F 5 HOH A 175 979 675 HOH HOH . 
F 5 HOH A 176 980 676 HOH HOH . 
F 5 HOH A 177 981 677 HOH HOH . 
F 5 HOH A 178 982 678 HOH HOH . 
F 5 HOH A 179 983 679 HOH HOH . 
F 5 HOH A 180 984 680 HOH HOH . 
F 5 HOH A 181 985 681 HOH HOH . 
F 5 HOH A 182 986 682 HOH HOH . 
F 5 HOH A 183 987 683 HOH HOH . 
F 5 HOH A 184 988 684 HOH HOH . 
F 5 HOH A 185 989 685 HOH HOH . 
F 5 HOH A 186 990 686 HOH HOH . 
F 5 HOH A 187 991 687 HOH HOH . 
F 5 HOH A 188 992 688 HOH HOH . 
F 5 HOH A 189 993 689 HOH HOH . 
F 5 HOH A 190 994 690 HOH HOH . 
F 5 HOH A 191 995 691 HOH HOH . 
F 5 HOH A 192 996 692 HOH HOH . 
F 5 HOH A 193 997 693 HOH HOH . 
F 5 HOH A 194 998 694 HOH HOH . 
F 5 HOH A 195 999 695 HOH HOH . 
F 5 HOH A 196 1000 696 HOH HOH . 
F 5 HOH A 197 1001 697 HOH HOH . 
F 5 HOH A 198 1002 698 HOH HOH . 
F 5 HOH A 199 1003 699 HOH HOH . 
F 5 HOH A 200 1004 700 HOH HOH . 
F 5 HOH A 201 1005 701 HOH HOH . 
F 5 HOH A 202 1006 702 HOH HOH . 
F 5 HOH A 203 1007 703 HOH HOH . 
F 5 HOH A 204 1008 704 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CMO . . . D 4 21.049 6.663 23.642 0.9 36.22 ? C CMO 502 A 1 
HETATM 2 O O CMO . . . D 4 22.142 6.33 23.226 0.9 30.05 ? O CMO 502 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           2 
#