data_3DAH # _model_server_result.job_id 4WmUAPFcJr7biWLBZEZpUA _model_server_result.datetime_utc '2024-11-22 18:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":319}' # _entry.id 3DAH # _exptl.entry_id 3DAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DAH _cell.length_a 77.966 _cell.length_b 123.242 _cell.length_c 197.364 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 M N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 299 n n P O2 PO4 sing 300 n n P O3 PO4 sing 301 n n P O4 PO4 sing 302 n n # _atom_sites.entry_id 3DAH _atom_sites.fract_transf_matrix[1][1] 0.012826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 319 319 PO4 PO4 . E 2 PO4 A 1 320 320 PO4 PO4 . F 3 AMP A 1 401 401 AMP AMP . G 2 PO4 B 1 319 319 PO4 PO4 . H 2 PO4 B 1 320 320 PO4 PO4 . I 2 PO4 B 1 321 321 PO4 PO4 . J 2 PO4 B 1 322 322 PO4 PO4 . K 3 AMP B 1 401 401 AMP AMP . L 3 AMP B 1 402 402 AMP AMP . M 2 PO4 C 1 319 319 PO4 PO4 . N 4 HOH A 1 402 402 HOH HOH . N 4 HOH A 2 403 403 HOH HOH . N 4 HOH A 3 404 404 HOH HOH . N 4 HOH A 4 405 405 HOH HOH . N 4 HOH A 5 406 406 HOH HOH . N 4 HOH A 6 407 407 HOH HOH . N 4 HOH A 7 408 408 HOH HOH . N 4 HOH A 8 409 409 HOH HOH . N 4 HOH A 9 410 410 HOH HOH . N 4 HOH A 10 411 411 HOH HOH . N 4 HOH A 11 412 412 HOH HOH . N 4 HOH A 12 413 413 HOH HOH . N 4 HOH A 13 414 414 HOH HOH . N 4 HOH A 14 415 415 HOH HOH . N 4 HOH A 15 416 416 HOH HOH . N 4 HOH A 16 417 417 HOH HOH . N 4 HOH A 17 418 418 HOH HOH . N 4 HOH A 18 419 419 HOH HOH . N 4 HOH A 19 420 420 HOH HOH . N 4 HOH A 20 421 421 HOH HOH . N 4 HOH A 21 422 422 HOH HOH . N 4 HOH A 22 423 423 HOH HOH . N 4 HOH A 23 424 424 HOH HOH . N 4 HOH A 24 425 425 HOH HOH . N 4 HOH A 25 426 426 HOH HOH . N 4 HOH A 26 427 427 HOH HOH . N 4 HOH A 27 428 428 HOH HOH . N 4 HOH A 28 429 429 HOH HOH . N 4 HOH A 29 430 430 HOH HOH . N 4 HOH A 30 431 431 HOH HOH . N 4 HOH A 31 432 432 HOH HOH . N 4 HOH A 32 433 433 HOH HOH . N 4 HOH A 33 434 434 HOH HOH . N 4 HOH A 34 435 435 HOH HOH . N 4 HOH A 35 436 436 HOH HOH . N 4 HOH A 36 437 437 HOH HOH . N 4 HOH A 37 438 438 HOH HOH . N 4 HOH A 38 439 439 HOH HOH . N 4 HOH A 39 440 440 HOH HOH . N 4 HOH A 40 441 441 HOH HOH . N 4 HOH A 41 442 442 HOH HOH . N 4 HOH A 42 443 443 HOH HOH . N 4 HOH A 43 444 444 HOH HOH . N 4 HOH A 44 445 445 HOH HOH . N 4 HOH A 45 446 446 HOH HOH . N 4 HOH A 46 447 447 HOH HOH . N 4 HOH A 47 448 448 HOH HOH . N 4 HOH A 48 449 449 HOH HOH . N 4 HOH A 49 450 450 HOH HOH . N 4 HOH A 50 451 451 HOH HOH . O 4 HOH B 1 403 403 HOH HOH . O 4 HOH B 2 404 404 HOH HOH . O 4 HOH B 3 405 405 HOH HOH . O 4 HOH B 4 406 406 HOH HOH . O 4 HOH B 5 407 407 HOH HOH . O 4 HOH B 6 408 408 HOH HOH . O 4 HOH B 7 409 409 HOH HOH . O 4 HOH B 8 410 410 HOH HOH . O 4 HOH B 9 411 411 HOH HOH . O 4 HOH B 10 412 412 HOH HOH . O 4 HOH B 11 413 413 HOH HOH . O 4 HOH B 12 414 414 HOH HOH . O 4 HOH B 13 415 415 HOH HOH . O 4 HOH B 14 416 416 HOH HOH . O 4 HOH B 15 417 417 HOH HOH . O 4 HOH B 16 418 418 HOH HOH . O 4 HOH B 17 419 419 HOH HOH . O 4 HOH B 18 420 420 HOH HOH . O 4 HOH B 19 421 421 HOH HOH . O 4 HOH B 20 422 422 HOH HOH . O 4 HOH B 21 423 423 HOH HOH . O 4 HOH B 22 424 424 HOH HOH . O 4 HOH B 23 425 425 HOH HOH . O 4 HOH B 24 426 426 HOH HOH . O 4 HOH B 25 427 427 HOH HOH . O 4 HOH B 26 428 428 HOH HOH . O 4 HOH B 27 429 429 HOH HOH . O 4 HOH B 28 430 430 HOH HOH . O 4 HOH B 29 431 431 HOH HOH . O 4 HOH B 30 432 432 HOH HOH . O 4 HOH B 31 433 433 HOH HOH . O 4 HOH B 32 434 434 HOH HOH . O 4 HOH B 33 435 435 HOH HOH . O 4 HOH B 34 436 436 HOH HOH . O 4 HOH B 35 437 437 HOH HOH . O 4 HOH B 36 438 438 HOH HOH . O 4 HOH B 37 439 439 HOH HOH . O 4 HOH B 38 440 440 HOH HOH . O 4 HOH B 39 441 441 HOH HOH . O 4 HOH B 40 442 442 HOH HOH . O 4 HOH B 41 443 443 HOH HOH . O 4 HOH B 42 444 444 HOH HOH . O 4 HOH B 43 445 445 HOH HOH . O 4 HOH B 44 446 446 HOH HOH . O 4 HOH B 45 447 447 HOH HOH . P 4 HOH C 1 320 320 HOH HOH . P 4 HOH C 2 321 321 HOH HOH . P 4 HOH C 3 322 322 HOH HOH . P 4 HOH C 4 323 323 HOH HOH . P 4 HOH C 5 324 324 HOH HOH . P 4 HOH C 6 325 325 HOH HOH . P 4 HOH C 7 326 326 HOH HOH . P 4 HOH C 8 327 327 HOH HOH . P 4 HOH C 9 328 328 HOH HOH . P 4 HOH C 10 329 329 HOH HOH . P 4 HOH C 11 330 330 HOH HOH . P 4 HOH C 12 331 331 HOH HOH . P 4 HOH C 13 332 332 HOH HOH . P 4 HOH C 14 333 333 HOH HOH . P 4 HOH C 15 334 334 HOH HOH . P 4 HOH C 16 335 335 HOH HOH . P 4 HOH C 17 336 336 HOH HOH . P 4 HOH C 18 337 337 HOH HOH . P 4 HOH C 19 338 338 HOH HOH . P 4 HOH C 20 339 339 HOH HOH . P 4 HOH C 21 340 340 HOH HOH . P 4 HOH C 22 341 341 HOH HOH . P 4 HOH C 23 342 342 HOH HOH . P 4 HOH C 24 343 343 HOH HOH . P 4 HOH C 25 344 344 HOH HOH . P 4 HOH C 26 345 345 HOH HOH . P 4 HOH C 27 346 346 HOH HOH . P 4 HOH C 28 347 347 HOH HOH . P 4 HOH C 29 348 348 HOH HOH . P 4 HOH C 30 349 349 HOH HOH . P 4 HOH C 31 350 350 HOH HOH . P 4 HOH C 32 351 351 HOH HOH . P 4 HOH C 33 352 352 HOH HOH . P 4 HOH C 34 353 353 HOH HOH . P 4 HOH C 35 354 354 HOH HOH . P 4 HOH C 36 355 355 HOH HOH . P 4 HOH C 37 356 356 HOH HOH . P 4 HOH C 38 357 357 HOH HOH . P 4 HOH C 39 358 358 HOH HOH . P 4 HOH C 40 359 359 HOH HOH . P 4 HOH C 41 360 360 HOH HOH . P 4 HOH C 42 361 361 HOH HOH . P 4 HOH C 43 362 362 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 2 7.254 15.175 73.185 1 64.47 ? P PO4 319 C 1 HETATM 2 O O1 PO4 . . . M 2 8.766 15.172 73.279 1 65.04 ? O1 PO4 319 C 1 HETATM 3 O O2 PO4 . . . M 2 6.785 16.381 72.405 1 63.31 ? O2 PO4 319 C 1 HETATM 4 O O3 PO4 . . . M 2 6.819 13.919 72.464 1 65.72 ? O3 PO4 319 C 1 HETATM 5 O O4 PO4 . . . M 2 6.663 15.164 74.573 1 64.58 ? O4 PO4 319 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #