data_3DAH
#
_model_server_result.job_id            EHa6DVtYzFqj8gSlOYSEaA 
_model_server_result.datetime_utc      '2024-11-22 19:09:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    3DAH 
#
_exptl.entry_id    3DAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DAH 
_cell.length_a            77.966 
_cell.length_b            123.242 
_cell.length_c            197.364 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3DAH 
_atom_sites.fract_transf_matrix[1][1]    0.012826 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008114 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005067 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PO4 A 1 319 319 PO4 PO4 . 
E 2 PO4 A 1 320 320 PO4 PO4 . 
F 3 AMP A 1 401 401 AMP AMP . 
G 2 PO4 B 1 319 319 PO4 PO4 . 
H 2 PO4 B 1 320 320 PO4 PO4 . 
I 2 PO4 B 1 321 321 PO4 PO4 . 
J 2 PO4 B 1 322 322 PO4 PO4 . 
K 3 AMP B 1 401 401 AMP AMP . 
L 3 AMP B 1 402 402 AMP AMP . 
M 2 PO4 C 1 319 319 PO4 PO4 . 
N 4 HOH A 1 402 402 HOH HOH . 
N 4 HOH A 2 403 403 HOH HOH . 
N 4 HOH A 3 404 404 HOH HOH . 
N 4 HOH A 4 405 405 HOH HOH . 
N 4 HOH A 5 406 406 HOH HOH . 
N 4 HOH A 6 407 407 HOH HOH . 
N 4 HOH A 7 408 408 HOH HOH . 
N 4 HOH A 8 409 409 HOH HOH . 
N 4 HOH A 9 410 410 HOH HOH . 
N 4 HOH A 10 411 411 HOH HOH . 
N 4 HOH A 11 412 412 HOH HOH . 
N 4 HOH A 12 413 413 HOH HOH . 
N 4 HOH A 13 414 414 HOH HOH . 
N 4 HOH A 14 415 415 HOH HOH . 
N 4 HOH A 15 416 416 HOH HOH . 
N 4 HOH A 16 417 417 HOH HOH . 
N 4 HOH A 17 418 418 HOH HOH . 
N 4 HOH A 18 419 419 HOH HOH . 
N 4 HOH A 19 420 420 HOH HOH . 
N 4 HOH A 20 421 421 HOH HOH . 
N 4 HOH A 21 422 422 HOH HOH . 
N 4 HOH A 22 423 423 HOH HOH . 
N 4 HOH A 23 424 424 HOH HOH . 
N 4 HOH A 24 425 425 HOH HOH . 
N 4 HOH A 25 426 426 HOH HOH . 
N 4 HOH A 26 427 427 HOH HOH . 
N 4 HOH A 27 428 428 HOH HOH . 
N 4 HOH A 28 429 429 HOH HOH . 
N 4 HOH A 29 430 430 HOH HOH . 
N 4 HOH A 30 431 431 HOH HOH . 
N 4 HOH A 31 432 432 HOH HOH . 
N 4 HOH A 32 433 433 HOH HOH . 
N 4 HOH A 33 434 434 HOH HOH . 
N 4 HOH A 34 435 435 HOH HOH . 
N 4 HOH A 35 436 436 HOH HOH . 
N 4 HOH A 36 437 437 HOH HOH . 
N 4 HOH A 37 438 438 HOH HOH . 
N 4 HOH A 38 439 439 HOH HOH . 
N 4 HOH A 39 440 440 HOH HOH . 
N 4 HOH A 40 441 441 HOH HOH . 
N 4 HOH A 41 442 442 HOH HOH . 
N 4 HOH A 42 443 443 HOH HOH . 
N 4 HOH A 43 444 444 HOH HOH . 
N 4 HOH A 44 445 445 HOH HOH . 
N 4 HOH A 45 446 446 HOH HOH . 
N 4 HOH A 46 447 447 HOH HOH . 
N 4 HOH A 47 448 448 HOH HOH . 
N 4 HOH A 48 449 449 HOH HOH . 
N 4 HOH A 49 450 450 HOH HOH . 
N 4 HOH A 50 451 451 HOH HOH . 
O 4 HOH B 1 403 403 HOH HOH . 
O 4 HOH B 2 404 404 HOH HOH . 
O 4 HOH B 3 405 405 HOH HOH . 
O 4 HOH B 4 406 406 HOH HOH . 
O 4 HOH B 5 407 407 HOH HOH . 
O 4 HOH B 6 408 408 HOH HOH . 
O 4 HOH B 7 409 409 HOH HOH . 
O 4 HOH B 8 410 410 HOH HOH . 
O 4 HOH B 9 411 411 HOH HOH . 
O 4 HOH B 10 412 412 HOH HOH . 
O 4 HOH B 11 413 413 HOH HOH . 
O 4 HOH B 12 414 414 HOH HOH . 
O 4 HOH B 13 415 415 HOH HOH . 
O 4 HOH B 14 416 416 HOH HOH . 
O 4 HOH B 15 417 417 HOH HOH . 
O 4 HOH B 16 418 418 HOH HOH . 
O 4 HOH B 17 419 419 HOH HOH . 
O 4 HOH B 18 420 420 HOH HOH . 
O 4 HOH B 19 421 421 HOH HOH . 
O 4 HOH B 20 422 422 HOH HOH . 
O 4 HOH B 21 423 423 HOH HOH . 
O 4 HOH B 22 424 424 HOH HOH . 
O 4 HOH B 23 425 425 HOH HOH . 
O 4 HOH B 24 426 426 HOH HOH . 
O 4 HOH B 25 427 427 HOH HOH . 
O 4 HOH B 26 428 428 HOH HOH . 
O 4 HOH B 27 429 429 HOH HOH . 
O 4 HOH B 28 430 430 HOH HOH . 
O 4 HOH B 29 431 431 HOH HOH . 
O 4 HOH B 30 432 432 HOH HOH . 
O 4 HOH B 31 433 433 HOH HOH . 
O 4 HOH B 32 434 434 HOH HOH . 
O 4 HOH B 33 435 435 HOH HOH . 
O 4 HOH B 34 436 436 HOH HOH . 
O 4 HOH B 35 437 437 HOH HOH . 
O 4 HOH B 36 438 438 HOH HOH . 
O 4 HOH B 37 439 439 HOH HOH . 
O 4 HOH B 38 440 440 HOH HOH . 
O 4 HOH B 39 441 441 HOH HOH . 
O 4 HOH B 40 442 442 HOH HOH . 
O 4 HOH B 41 443 443 HOH HOH . 
O 4 HOH B 42 444 444 HOH HOH . 
O 4 HOH B 43 445 445 HOH HOH . 
O 4 HOH B 44 446 446 HOH HOH . 
O 4 HOH B 45 447 447 HOH HOH . 
P 4 HOH C 1 320 320 HOH HOH . 
P 4 HOH C 2 321 321 HOH HOH . 
P 4 HOH C 3 322 322 HOH HOH . 
P 4 HOH C 4 323 323 HOH HOH . 
P 4 HOH C 5 324 324 HOH HOH . 
P 4 HOH C 6 325 325 HOH HOH . 
P 4 HOH C 7 326 326 HOH HOH . 
P 4 HOH C 8 327 327 HOH HOH . 
P 4 HOH C 9 328 328 HOH HOH . 
P 4 HOH C 10 329 329 HOH HOH . 
P 4 HOH C 11 330 330 HOH HOH . 
P 4 HOH C 12 331 331 HOH HOH . 
P 4 HOH C 13 332 332 HOH HOH . 
P 4 HOH C 14 333 333 HOH HOH . 
P 4 HOH C 15 334 334 HOH HOH . 
P 4 HOH C 16 335 335 HOH HOH . 
P 4 HOH C 17 336 336 HOH HOH . 
P 4 HOH C 18 337 337 HOH HOH . 
P 4 HOH C 19 338 338 HOH HOH . 
P 4 HOH C 20 339 339 HOH HOH . 
P 4 HOH C 21 340 340 HOH HOH . 
P 4 HOH C 22 341 341 HOH HOH . 
P 4 HOH C 23 342 342 HOH HOH . 
P 4 HOH C 24 343 343 HOH HOH . 
P 4 HOH C 25 344 344 HOH HOH . 
P 4 HOH C 26 345 345 HOH HOH . 
P 4 HOH C 27 346 346 HOH HOH . 
P 4 HOH C 28 347 347 HOH HOH . 
P 4 HOH C 29 348 348 HOH HOH . 
P 4 HOH C 30 349 349 HOH HOH . 
P 4 HOH C 31 350 350 HOH HOH . 
P 4 HOH C 32 351 351 HOH HOH . 
P 4 HOH C 33 352 352 HOH HOH . 
P 4 HOH C 34 353 353 HOH HOH . 
P 4 HOH C 35 354 354 HOH HOH . 
P 4 HOH C 36 355 355 HOH HOH . 
P 4 HOH C 37 356 356 HOH HOH . 
P 4 HOH C 38 357 357 HOH HOH . 
P 4 HOH C 39 358 358 HOH HOH . 
P 4 HOH C 40 359 359 HOH HOH . 
P 4 HOH C 41 360 360 HOH HOH . 
P 4 HOH C 42 361 361 HOH HOH . 
P 4 HOH C 43 362 362 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . F 3 6.88 20.826 14.472 1 77.76 ? P AMP 401 A 1 
HETATM 2 O O1P AMP . . . F 3 6.489 21.831 13.403 1 77.48 ? O1P AMP 401 A 1 
HETATM 3 O O2P AMP . . . F 3 7.847 19.773 13.979 1 77.43 ? O2P AMP 401 A 1 
HETATM 4 O O3P AMP . . . F 3 7.269 21.437 15.804 1 77.55 ? O3P AMP 401 A 1 
HETATM 5 O O5' AMP . . . F 3 5.516 19.996 14.766 1 74.74 ? O5' AMP 401 A 1 
HETATM 6 C C5' AMP . . . F 3 4.469 20.514 15.594 1 70.37 ? C5' AMP 401 A 1 
HETATM 7 C C4' AMP . . . F 3 3.152 20.553 14.82 1 66.82 ? C4' AMP 401 A 1 
HETATM 8 O O4' AMP . . . F 3 3.085 19.478 13.872 1 64.8 ? O4' AMP 401 A 1 
HETATM 9 C C3' AMP . . . F 3 1.935 20.421 15.725 1 65.39 ? C3' AMP 401 A 1 
HETATM 10 O O3' AMP . . . F 3 1.014 21.46 15.376 1 66.14 ? O3' AMP 401 A 1 
HETATM 11 C C2' AMP . . . F 3 1.358 19.046 15.407 1 64.3 ? C2' AMP 401 A 1 
HETATM 12 O O2' AMP . . . F 3 -0.072 18.987 15.458 1 62.61 ? O2' AMP 401 A 1 
HETATM 13 C C1' AMP . . . F 3 1.852 18.753 13.997 1 62.25 ? C1' AMP 401 A 1 
HETATM 14 N N9 AMP . . . F 3 2.137 17.311 13.761 1 61.3 ? N9 AMP 401 A 1 
HETATM 15 C C8 AMP . . . F 3 2.051 16.291 14.643 1 60.46 ? C8 AMP 401 A 1 
HETATM 16 N N7 AMP . . . F 3 2.408 15.115 14.069 1 60.04 ? N7 AMP 401 A 1 
HETATM 17 C C5 AMP . . . F 3 2.736 15.38 12.791 1 60.35 ? C5 AMP 401 A 1 
HETATM 18 C C6 AMP . . . F 3 3.199 14.603 11.616 1 60.55 ? C6 AMP 401 A 1 
HETATM 19 N N6 AMP . . . F 3 3.394 13.268 11.701 1 60.78 ? N6 AMP 401 A 1 
HETATM 20 N N1 AMP . . . F 3 3.423 15.271 10.46 1 60.81 ? N1 AMP 401 A 1 
HETATM 21 C C2 AMP . . . F 3 3.238 16.602 10.357 1 60.73 ? C2 AMP 401 A 1 
HETATM 22 N N3 AMP . . . F 3 2.821 17.373 11.378 1 60.19 ? N3 AMP 401 A 1 
HETATM 23 C C4 AMP . . . F 3 2.559 16.829 12.594 1 60.5 ? C4 AMP 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#