data_3DAJ # _model_server_result.job_id R_DyG2Wrt1Ypc7PyOROlmw _model_server_result.datetime_utc '2025-03-25 15:29:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3daj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3DAJ # _exptl.entry_id 3DAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 423.511 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-butyl-3-{[6-(9H-purin-6-ylamino)hexanoyl]amino}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DAJ _cell.length_a 84.932 _cell.length_b 84.932 _cell.length_c 77.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H29 N7 O2' _chem_comp.formula_weight 423.511 _chem_comp.id FXG _chem_comp.mon_nstd_flag . _chem_comp.name N-butyl-3-{[6-(9H-purin-6-ylamino)hexanoyl]amino}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 O18 FXG doub 83 n n N17 C16 FXG sing 84 n n C16 C15 FXG sing 85 n n C15 C14 FXG sing 86 n n C15 H15 FXG sing 87 n n C15 H15A FXG sing 88 n n C13 C14 FXG sing 89 n n C14 H14 FXG sing 90 n n C14 H14A FXG sing 91 n n C12 C13 FXG sing 92 n n C13 H13 FXG sing 93 n n C13 H13A FXG sing 94 n n C11 C12 FXG sing 95 n n C12 H12 FXG sing 96 n n C12 H12A FXG sing 97 n n N10 C11 FXG sing 98 n n C11 H11 FXG sing 99 n n C11 H11A FXG sing 100 n n C6 N10 FXG sing 101 n n N10 HN10 FXG sing 102 n n C1 C6 FXG doub 103 n y C6 N5 FXG sing 104 n y C2 C1 FXG sing 105 n y N7 C1 FXG sing 106 n y N9 C2 FXG sing 107 n y C2 N3 FXG doub 108 n y N9 C8 FXG sing 109 n y C8 N7 FXG doub 110 n y C8 H8 FXG sing 111 n n N3 C4 FXG sing 112 n y C4 N5 FXG doub 113 n y C4 H4 FXG sing 114 n n C19 N17 FXG sing 115 n n N17 HN17 FXG sing 116 n n C24 C19 FXG doub 117 n y C20 C19 FXG sing 118 n y C21 C20 FXG doub 119 n y C20 H20 FXG sing 120 n n C22 C21 FXG sing 121 n y C21 H21 FXG sing 122 n n C22 C23 FXG doub 123 n y C22 H22 FXG sing 124 n n C25 C23 FXG sing 125 n n C23 C24 FXG sing 126 n y C24 H24 FXG sing 127 n n N26 C25 FXG sing 128 n n C25 O27 FXG doub 129 n n C28 N26 FXG sing 130 n n N26 HN26 FXG sing 131 n n C29 C28 FXG sing 132 n n C28 H28 FXG sing 133 n n C28 H28A FXG sing 134 n n C29 C30 FXG sing 135 n n C29 H29 FXG sing 136 n n C29 H29A FXG sing 137 n n C31 C30 FXG sing 138 n n C30 H30A FXG sing 139 n n C31 H31B FXG sing 140 n n C31 H31A FXG sing 141 n n N9 HN9 FXG sing 142 n n C30 H30B FXG sing 143 n n C31 H31C FXG sing 144 n n # _atom_sites.entry_id 3DAJ _atom_sites.fract_transf_matrix[1][1] 0.011774 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FXG A 1 1 1 FXG FXG . C 3 HOH A 1 392 1 HOH WAT . C 3 HOH A 2 393 2 HOH WAT . C 3 HOH A 3 394 3 HOH WAT . C 3 HOH A 4 395 4 HOH WAT . C 3 HOH A 5 396 5 HOH WAT . C 3 HOH A 6 397 6 HOH WAT . C 3 HOH A 7 398 7 HOH WAT . C 3 HOH A 8 399 8 HOH WAT . C 3 HOH A 9 400 9 HOH WAT . C 3 HOH A 10 401 10 HOH WAT . C 3 HOH A 11 402 11 HOH WAT . C 3 HOH A 12 403 12 HOH WAT . C 3 HOH A 13 404 13 HOH WAT . C 3 HOH A 14 405 14 HOH WAT . C 3 HOH A 15 406 15 HOH WAT . C 3 HOH A 16 407 16 HOH WAT . C 3 HOH A 17 408 17 HOH WAT . C 3 HOH A 18 409 18 HOH WAT . C 3 HOH A 19 410 19 HOH WAT . C 3 HOH A 20 411 20 HOH WAT . C 3 HOH A 21 412 21 HOH WAT . C 3 HOH A 22 413 22 HOH WAT . C 3 HOH A 23 414 23 HOH WAT . C 3 HOH A 24 415 24 HOH WAT . C 3 HOH A 25 416 25 HOH WAT . C 3 HOH A 26 417 26 HOH WAT . C 3 HOH A 27 418 27 HOH WAT . C 3 HOH A 28 419 28 HOH WAT . C 3 HOH A 29 420 29 HOH WAT . C 3 HOH A 30 421 30 HOH WAT . C 3 HOH A 31 422 31 HOH WAT . C 3 HOH A 32 423 32 HOH WAT . C 3 HOH A 33 424 33 HOH WAT . C 3 HOH A 34 425 34 HOH WAT . C 3 HOH A 35 426 35 HOH WAT . C 3 HOH A 36 427 36 HOH WAT . C 3 HOH A 37 428 37 HOH WAT . C 3 HOH A 38 429 38 HOH WAT . C 3 HOH A 39 430 39 HOH WAT . C 3 HOH A 40 431 40 HOH WAT . C 3 HOH A 41 432 41 HOH WAT . C 3 HOH A 42 433 42 HOH WAT . C 3 HOH A 43 434 43 HOH WAT . C 3 HOH A 44 435 44 HOH WAT . C 3 HOH A 45 436 45 HOH WAT . C 3 HOH A 46 437 46 HOH WAT . C 3 HOH A 47 438 47 HOH WAT . C 3 HOH A 48 439 48 HOH WAT . C 3 HOH A 49 440 49 HOH WAT . C 3 HOH A 50 441 50 HOH WAT . C 3 HOH A 51 442 51 HOH WAT . C 3 HOH A 52 443 52 HOH WAT . C 3 HOH A 53 444 53 HOH WAT . C 3 HOH A 54 445 54 HOH WAT . C 3 HOH A 55 446 55 HOH WAT . C 3 HOH A 56 447 56 HOH WAT . C 3 HOH A 57 448 57 HOH WAT . C 3 HOH A 58 449 58 HOH WAT . C 3 HOH A 59 450 59 HOH WAT . C 3 HOH A 60 451 60 HOH WAT . C 3 HOH A 61 452 61 HOH WAT . C 3 HOH A 62 453 62 HOH WAT . C 3 HOH A 63 454 63 HOH WAT . C 3 HOH A 64 455 64 HOH WAT . C 3 HOH A 65 456 65 HOH WAT . C 3 HOH A 66 457 66 HOH WAT . C 3 HOH A 67 458 67 HOH WAT . C 3 HOH A 68 459 68 HOH WAT . C 3 HOH A 69 460 69 HOH WAT . C 3 HOH A 70 461 70 HOH WAT . C 3 HOH A 71 462 71 HOH WAT . C 3 HOH A 72 463 72 HOH WAT . C 3 HOH A 73 464 73 HOH WAT . C 3 HOH A 74 465 74 HOH WAT . C 3 HOH A 75 466 75 HOH WAT . C 3 HOH A 76 467 76 HOH WAT . C 3 HOH A 77 468 77 HOH WAT . C 3 HOH A 78 469 78 HOH WAT . C 3 HOH A 79 470 79 HOH WAT . C 3 HOH A 80 471 80 HOH WAT . C 3 HOH A 81 472 81 HOH WAT . C 3 HOH A 82 473 82 HOH WAT . C 3 HOH A 83 474 83 HOH WAT . C 3 HOH A 84 475 84 HOH WAT . C 3 HOH A 85 476 85 HOH WAT . C 3 HOH A 86 477 86 HOH WAT . C 3 HOH A 87 478 87 HOH WAT . C 3 HOH A 88 479 88 HOH WAT . C 3 HOH A 89 480 89 HOH WAT . C 3 HOH A 90 481 90 HOH WAT . C 3 HOH A 91 482 91 HOH WAT . C 3 HOH A 92 483 92 HOH WAT . C 3 HOH A 93 484 93 HOH WAT . C 3 HOH A 94 485 94 HOH WAT . C 3 HOH A 95 486 95 HOH WAT . C 3 HOH A 96 487 96 HOH WAT . C 3 HOH A 97 488 97 HOH WAT . C 3 HOH A 98 489 98 HOH WAT . C 3 HOH A 99 490 99 HOH WAT . C 3 HOH A 100 491 100 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O18 FXG . . . B 2 73.182 22.895 7.802 1 54.84 ? O18 FXG 1 A 1 HETATM 2 C C16 FXG . . . B 2 72.592 22.078 7.11 1 54.14 ? C16 FXG 1 A 1 HETATM 3 C C15 FXG . . . B 2 71.261 21.51 7.554 1 51.82 ? C15 FXG 1 A 1 HETATM 4 C C14 FXG . . . B 2 70.42 22.561 8.273 1 48.54 ? C14 FXG 1 A 1 HETATM 5 C C13 FXG . . . B 2 69.326 23.103 7.363 1 44.84 ? C13 FXG 1 A 1 HETATM 6 C C12 FXG . . . B 2 69.712 24.467 6.805 1 40.42 ? C12 FXG 1 A 1 HETATM 7 C C11 FXG . . . B 2 68.582 25.045 5.964 1 34.3 ? C11 FXG 1 A 1 HETATM 8 N N10 FXG . . . B 2 68.953 24.754 4.585 1 33.8 ? N10 FXG 1 A 1 HETATM 9 C C6 FXG . . . B 2 68.141 25.077 3.545 1 32.61 ? C6 FXG 1 A 1 HETATM 10 C C1 FXG . . . B 2 68.533 24.783 2.245 1 32.54 ? C1 FXG 1 A 1 HETATM 11 C C2 FXG . . . B 2 67.68 25.132 1.221 1 32.87 ? C2 FXG 1 A 1 HETATM 12 N N9 FXG . . . B 2 68.217 24.771 0.043 1 32.74 ? N9 FXG 1 A 1 HETATM 13 C C8 FXG . . . B 2 69.412 24.198 0.33 1 33.3 ? C8 FXG 1 A 1 HETATM 14 N N7 FXG . . . B 2 69.608 24.203 1.674 1 32.57 ? N7 FXG 1 A 1 HETATM 15 N N3 FXG . . . B 2 66.488 25.739 1.439 1 32.43 ? N3 FXG 1 A 1 HETATM 16 C C4 FXG . . . B 2 66.139 26.01 2.708 1 32.81 ? C4 FXG 1 A 1 HETATM 17 N N5 FXG . . . B 2 66.944 25.689 3.739 1 32.29 ? N5 FXG 1 A 1 HETATM 18 N N17 FXG . . . B 2 73.05 21.622 5.942 1 55.79 ? N17 FXG 1 A 1 HETATM 19 C C19 FXG . . . B 2 74.271 22.019 5.366 1 56.3 ? C19 FXG 1 A 1 HETATM 20 C C20 FXG . . . B 2 74.609 23.365 5.202 1 56.58 ? C20 FXG 1 A 1 HETATM 21 C C21 FXG . . . B 2 75.829 23.722 4.624 1 56.19 ? C21 FXG 1 A 1 HETATM 22 C C22 FXG . . . B 2 76.715 22.73 4.202 1 56.39 ? C22 FXG 1 A 1 HETATM 23 C C23 FXG . . . B 2 76.382 21.383 4.362 1 56.65 ? C23 FXG 1 A 1 HETATM 24 C C24 FXG . . . B 2 75.16 21.033 4.94 1 56.53 ? C24 FXG 1 A 1 HETATM 25 C C25 FXG . . . B 2 77.327 20.306 3.91 1 56.87 ? C25 FXG 1 A 1 HETATM 26 O O27 FXG . . . B 2 78.623 20.394 4.207 1 57.2 ? O27 FXG 1 A 1 HETATM 27 N N26 FXG . . . B 2 76.877 19.325 3.25 1 57.52 ? N26 FXG 1 A 1 HETATM 28 C C28 FXG . . . B 2 77.59 18.427 2.859 1 57.94 ? C28 FXG 1 A 1 HETATM 29 C C29 FXG . . . B 2 78.308 17.476 2.463 1 58.82 ? C29 FXG 1 A 1 HETATM 30 C C30 FXG . . . B 2 78.365 16.232 3.227 1 59.44 ? C30 FXG 1 A 1 HETATM 31 C C31 FXG . . . B 2 77.447 15.298 3.048 1 59.77 ? C31 FXG 1 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #