data_3DAP # _model_server_result.job_id OKctHPgAbxoACrf5ScHkEw _model_server_result.datetime_utc '2024-12-02 02:01:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3DAP # _exptl.entry_id 3DAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.6 _cell.angle_gamma 90 _cell.entry_id 3DAP _cell.length_a 75.6 _cell.length_b 65.6 _cell.length_c 84.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 261 n n PA O2A NDP sing 262 n n PA O5B NDP sing 263 n n PA O3 NDP sing 264 n n O2A HOA2 NDP sing 265 n n O5B C5B NDP sing 266 n n C5B C4B NDP sing 267 n n C5B H51A NDP sing 268 n n C5B H52A NDP sing 269 n n C4B O4B NDP sing 270 n n C4B C3B NDP sing 271 n n C4B H4B NDP sing 272 n n O4B C1B NDP sing 273 n n C3B O3B NDP sing 274 n n C3B C2B NDP sing 275 n n C3B H3B NDP sing 276 n n O3B HO3A NDP sing 277 n n C2B O2B NDP sing 278 n n C2B C1B NDP sing 279 n n C2B H2B NDP sing 280 n n O2B P2B NDP sing 281 n n C1B N9A NDP sing 282 n n C1B H1B NDP sing 283 n n N9A C8A NDP sing 284 n y N9A C4A NDP sing 285 n y C8A N7A NDP doub 286 n y C8A H8A NDP sing 287 n n N7A C5A NDP sing 288 n y C5A C6A NDP sing 289 n y C5A C4A NDP doub 290 n y C6A N6A NDP sing 291 n n C6A N1A NDP doub 292 n y N6A H61A NDP sing 293 n n N6A H62A NDP sing 294 n n N1A C2A NDP sing 295 n y C2A N3A NDP doub 296 n y C2A H2A NDP sing 297 n n N3A C4A NDP sing 298 n y O3 PN NDP sing 299 n n PN O1N NDP doub 300 n n PN O2N NDP sing 301 n n PN O5D NDP sing 302 n n O2N H21N NDP sing 303 n n O5D C5D NDP sing 304 n n C5D C4D NDP sing 305 n n C5D H51N NDP sing 306 n n C5D H52N NDP sing 307 n n C4D O4D NDP sing 308 n n C4D C3D NDP sing 309 n n C4D H4D NDP sing 310 n n O4D C1D NDP sing 311 n n C3D O3D NDP sing 312 n n C3D C2D NDP sing 313 n n C3D H3D NDP sing 314 n n O3D HO3N NDP sing 315 n n C2D O2D NDP sing 316 n n C2D C1D NDP sing 317 n n C2D H2D NDP sing 318 n n O2D HO2N NDP sing 319 n n C1D N1N NDP sing 320 n n C1D H1D NDP sing 321 n n N1N C2N NDP sing 322 n n N1N C6N NDP sing 323 n n C2N C3N NDP doub 324 n n C2N H2N NDP sing 325 n n C3N C7N NDP sing 326 n n C3N C4N NDP sing 327 n n C7N O7N NDP doub 328 n n C7N N7N NDP sing 329 n n N7N H71N NDP sing 330 n n N7N H72N NDP sing 331 n n C4N C5N NDP sing 332 n n C4N H41N NDP sing 333 n n C4N H42N NDP sing 334 n n C5N C6N NDP doub 335 n n C5N H5N NDP sing 336 n n C6N H6N NDP sing 337 n n P2B O1X NDP doub 338 n n P2B O2X NDP sing 339 n n P2B O3X NDP sing 340 n n O2X HOP2 NDP sing 341 n n O3X HOP3 NDP sing 342 n n # _atom_sites.entry_id 3DAP _atom_sites.fract_transf_matrix[1][1] 0.013228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003943 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 401 401 NDP NDP . D 2 NDP B 1 901 901 NDP NDP . E 3 DA3 B 1 950 950 DA3 DA3 . F 4 HOH A 1 1001 1001 HOH HOH . F 4 HOH A 2 1002 1002 HOH HOH . F 4 HOH A 3 1003 1003 HOH HOH . F 4 HOH A 4 1004 1004 HOH HOH . F 4 HOH A 5 1005 1005 HOH HOH . F 4 HOH A 6 1006 1006 HOH HOH . F 4 HOH A 7 1007 1007 HOH HOH . F 4 HOH A 8 1008 1008 HOH HOH . F 4 HOH A 9 1009 1009 HOH HOH . F 4 HOH A 10 1010 1010 HOH HOH . F 4 HOH A 11 1011 1011 HOH HOH . F 4 HOH A 12 1012 1012 HOH HOH . F 4 HOH A 13 1013 1013 HOH HOH . F 4 HOH A 14 1014 1014 HOH HOH . F 4 HOH A 15 1015 1015 HOH HOH . F 4 HOH A 16 1016 1016 HOH HOH . F 4 HOH A 17 1017 1017 HOH HOH . F 4 HOH A 18 1018 1018 HOH HOH . F 4 HOH A 19 1019 1019 HOH HOH . F 4 HOH A 20 1020 1020 HOH HOH . F 4 HOH A 21 1021 1021 HOH HOH . F 4 HOH A 22 1022 1022 HOH HOH . F 4 HOH A 23 1023 1023 HOH HOH . F 4 HOH A 24 1024 1024 HOH HOH . F 4 HOH A 25 1025 1025 HOH HOH . F 4 HOH A 26 1026 1026 HOH HOH . F 4 HOH A 27 1027 1027 HOH HOH . F 4 HOH A 28 1028 1028 HOH HOH . F 4 HOH A 29 1029 1029 HOH HOH . F 4 HOH A 30 1031 1031 HOH HOH . F 4 HOH A 31 1032 1032 HOH HOH . F 4 HOH A 32 1034 1034 HOH HOH . F 4 HOH A 33 1035 1035 HOH HOH . F 4 HOH A 34 1036 1036 HOH HOH . F 4 HOH A 35 1037 1037 HOH HOH . F 4 HOH A 36 1038 1038 HOH HOH . F 4 HOH A 37 1039 1039 HOH HOH . F 4 HOH A 38 1040 1040 HOH HOH . F 4 HOH A 39 1041 1041 HOH HOH . F 4 HOH A 40 1042 1042 HOH HOH . F 4 HOH A 41 1044 1044 HOH HOH . F 4 HOH A 42 1045 1045 HOH HOH . F 4 HOH A 43 1047 1047 HOH HOH . F 4 HOH A 44 1048 1048 HOH HOH . F 4 HOH A 45 1079 1079 HOH HOH . F 4 HOH A 46 1090 1090 HOH HOH . F 4 HOH A 47 1094 1094 HOH HOH . F 4 HOH A 48 1099 1099 HOH HOH . F 4 HOH A 49 1100 1100 HOH HOH . F 4 HOH A 50 1103 1103 HOH HOH . F 4 HOH A 51 1106 1106 HOH HOH . F 4 HOH A 52 1107 1107 HOH HOH . F 4 HOH A 53 1109 1109 HOH HOH . F 4 HOH A 54 1110 1110 HOH HOH . F 4 HOH A 55 1112 1112 HOH HOH . F 4 HOH A 56 1113 1113 HOH HOH . F 4 HOH A 57 1114 1114 HOH HOH . F 4 HOH A 58 1115 1115 HOH HOH . F 4 HOH A 59 1116 1116 HOH HOH . F 4 HOH A 60 1117 1117 HOH HOH . F 4 HOH A 61 1118 1118 HOH HOH . F 4 HOH A 62 1119 1119 HOH HOH . F 4 HOH A 63 1130 1130 HOH HOH . F 4 HOH A 64 1131 1131 HOH HOH . F 4 HOH A 65 1132 1132 HOH HOH . G 4 HOH B 1 1030 1030 HOH HOH . G 4 HOH B 2 1033 1033 HOH HOH . G 4 HOH B 3 1043 1043 HOH HOH . G 4 HOH B 4 1046 1046 HOH HOH . G 4 HOH B 5 1049 1049 HOH HOH . G 4 HOH B 6 1050 1050 HOH HOH . G 4 HOH B 7 1051 1051 HOH HOH . G 4 HOH B 8 1052 1052 HOH HOH . G 4 HOH B 9 1053 1053 HOH HOH . G 4 HOH B 10 1054 1054 HOH HOH . G 4 HOH B 11 1055 1055 HOH HOH . G 4 HOH B 12 1056 1056 HOH HOH . G 4 HOH B 13 1057 1057 HOH HOH . G 4 HOH B 14 1058 1058 HOH HOH . G 4 HOH B 15 1059 1059 HOH HOH . G 4 HOH B 16 1060 1060 HOH HOH . G 4 HOH B 17 1061 1061 HOH HOH . G 4 HOH B 18 1062 1062 HOH HOH . G 4 HOH B 19 1063 1063 HOH HOH . G 4 HOH B 20 1064 1064 HOH HOH . G 4 HOH B 21 1065 1065 HOH HOH . G 4 HOH B 22 1066 1066 HOH HOH . G 4 HOH B 23 1067 1067 HOH HOH . G 4 HOH B 24 1068 1068 HOH HOH . G 4 HOH B 25 1069 1069 HOH HOH . G 4 HOH B 26 1070 1070 HOH HOH . G 4 HOH B 27 1071 1071 HOH HOH . G 4 HOH B 28 1072 1072 HOH HOH . G 4 HOH B 29 1073 1073 HOH HOH . G 4 HOH B 30 1074 1074 HOH HOH . G 4 HOH B 31 1075 1075 HOH HOH . G 4 HOH B 32 1076 1076 HOH HOH . G 4 HOH B 33 1077 1077 HOH HOH . G 4 HOH B 34 1078 1078 HOH HOH . G 4 HOH B 35 1080 1080 HOH HOH . G 4 HOH B 36 1081 1081 HOH HOH . G 4 HOH B 37 1082 1082 HOH HOH . G 4 HOH B 38 1083 1083 HOH HOH . G 4 HOH B 39 1084 1084 HOH HOH . G 4 HOH B 40 1085 1085 HOH HOH . G 4 HOH B 41 1086 1086 HOH HOH . G 4 HOH B 42 1087 1087 HOH HOH . G 4 HOH B 43 1088 1088 HOH HOH . G 4 HOH B 44 1089 1089 HOH HOH . G 4 HOH B 45 1091 1091 HOH HOH . G 4 HOH B 46 1092 1092 HOH HOH . G 4 HOH B 47 1093 1093 HOH HOH . G 4 HOH B 48 1095 1095 HOH HOH . G 4 HOH B 49 1096 1096 HOH HOH . G 4 HOH B 50 1097 1097 HOH HOH . G 4 HOH B 51 1098 1098 HOH HOH . G 4 HOH B 52 1101 1101 HOH HOH . G 4 HOH B 53 1102 1102 HOH HOH . G 4 HOH B 54 1104 1104 HOH HOH . G 4 HOH B 55 1105 1105 HOH HOH . G 4 HOH B 56 1108 1108 HOH HOH . G 4 HOH B 57 1111 1111 HOH HOH . G 4 HOH B 58 1120 1120 HOH HOH . G 4 HOH B 59 1121 1121 HOH HOH . G 4 HOH B 60 1122 1122 HOH HOH . G 4 HOH B 61 1123 1123 HOH HOH . G 4 HOH B 62 1124 1124 HOH HOH . G 4 HOH B 63 1125 1125 HOH HOH . G 4 HOH B 64 1126 1126 HOH HOH . G 4 HOH B 65 1127 1127 HOH HOH . G 4 HOH B 66 1128 1128 HOH HOH . G 4 HOH B 67 1129 1129 HOH HOH . G 4 HOH B 68 1133 1133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 -4.471 61.649 8.031 1 28.72 ? PA NDP 401 A 1 HETATM 2 O O1A NDP . . . C 2 -4.878 62.504 9.184 1 25.29 ? O1A NDP 401 A 1 HETATM 3 O O2A NDP . . . C 2 -5.425 61.479 6.905 1 33.58 ? O2A NDP 401 A 1 HETATM 4 O O5B NDP . . . C 2 -3.04 62.08 7.509 1 30.79 ? O5B NDP 401 A 1 HETATM 5 C C5B NDP . . . C 2 -2.688 61.652 6.087 1 29.23 ? C5B NDP 401 A 1 HETATM 6 C C4B NDP . . . C 2 -1.988 62.598 5.145 1 26.84 ? C4B NDP 401 A 1 HETATM 7 O O4B NDP . . . C 2 -2.992 63.545 4.635 1 26.7 ? O4B NDP 401 A 1 HETATM 8 C C3B NDP . . . C 2 -0.981 63.562 5.945 1 29.08 ? C3B NDP 401 A 1 HETATM 9 O O3B NDP . . . C 2 0.311 63.059 5.676 1 28.23 ? O3B NDP 401 A 1 HETATM 10 C C2B NDP . . . C 2 -1.119 64.849 5.135 1 28.65 ? C2B NDP 401 A 1 HETATM 11 O O2B NDP . . . C 2 -0.038 65.236 4.23 1 29.85 ? O2B NDP 401 A 1 HETATM 12 C C1B NDP . . . C 2 -2.522 64.892 4.744 1 28.9 ? C1B NDP 401 A 1 HETATM 13 N N9A NDP . . . C 2 -3.43 65.905 5.213 1 29.53 ? N9A NDP 401 A 1 HETATM 14 C C8A NDP . . . C 2 -3.575 65.808 6.567 1 31.7 ? C8A NDP 401 A 1 HETATM 15 N N7A NDP . . . C 2 -4.493 66.663 7.078 1 34.23 ? N7A NDP 401 A 1 HETATM 16 C C5A NDP . . . C 2 -4.971 67.21 5.955 1 33.37 ? C5A NDP 401 A 1 HETATM 17 C C6A NDP . . . C 2 -5.938 68.201 5.89 1 32.68 ? C6A NDP 401 A 1 HETATM 18 N N6A NDP . . . C 2 -6.63 68.613 6.957 1 34.97 ? N6A NDP 401 A 1 HETATM 19 N N1A NDP . . . C 2 -6.308 68.671 4.67 1 30.7 ? N1A NDP 401 A 1 HETATM 20 C C2A NDP . . . C 2 -5.762 68.085 3.61 1 31.47 ? C2A NDP 401 A 1 HETATM 21 N N3A NDP . . . C 2 -4.726 67.172 3.608 1 34.03 ? N3A NDP 401 A 1 HETATM 22 C C4A NDP . . . C 2 -4.362 66.759 4.869 1 32.61 ? C4A NDP 401 A 1 HETATM 23 O O3 NDP . . . C 2 -4.143 60.197 8.602 1 30.4 ? O3 NDP 401 A 1 HETATM 24 P PN NDP . . . C 2 -3.243 59.714 9.852 1 26.25 ? PN NDP 401 A 1 HETATM 25 O O1N NDP . . . C 2 -4.132 58.984 10.79 1 30.11 ? O1N NDP 401 A 1 HETATM 26 O O2N NDP . . . C 2 -2.454 60.847 10.344 1 29.6 ? O2N NDP 401 A 1 HETATM 27 O O5D NDP . . . C 2 -2.289 58.772 9.075 1 29.96 ? O5D NDP 401 A 1 HETATM 28 C C5D NDP . . . C 2 -1.965 57.54 9.751 1 26.54 ? C5D NDP 401 A 1 HETATM 29 C C4D NDP . . . C 2 -1.416 56.472 8.946 1 29.19 ? C4D NDP 401 A 1 HETATM 30 O O4D NDP . . . C 2 -0.636 55.624 9.759 1 27 ? O4D NDP 401 A 1 HETATM 31 C C3D NDP . . . C 2 -2.458 55.637 8.203 1 28.59 ? C3D NDP 401 A 1 HETATM 32 O O3D NDP . . . C 2 -2.386 55.798 6.775 1 29.46 ? O3D NDP 401 A 1 HETATM 33 C C2D NDP . . . C 2 -2.168 54.161 8.678 1 29.33 ? C2D NDP 401 A 1 HETATM 34 O O2D NDP . . . C 2 -1.844 53.301 7.623 1 27.3 ? O2D NDP 401 A 1 HETATM 35 C C1D NDP . . . C 2 -0.972 54.266 9.622 1 25.77 ? C1D NDP 401 A 1 HETATM 36 N N1N NDP . . . C 2 -1.246 53.732 10.966 1 24.9 ? N1N NDP 401 A 1 HETATM 37 C C2N NDP . . . C 2 -0.567 52.631 11.339 1 23.92 ? C2N NDP 401 A 1 HETATM 38 C C3N NDP . . . C 2 -0.627 52.031 12.551 1 23.64 ? C3N NDP 401 A 1 HETATM 39 C C7N NDP . . . C 2 0.093 50.87 12.9 1 17.1 ? C7N NDP 401 A 1 HETATM 40 O O7N NDP . . . C 2 -0.138 50.254 14.137 1 13.69 ? O7N NDP 401 A 1 HETATM 41 N N7N NDP . . . C 2 0.955 50.421 11.994 1 16.59 ? N7N NDP 401 A 1 HETATM 42 C C4N NDP . . . C 2 -1.496 52.697 13.425 1 22.93 ? C4N NDP 401 A 1 HETATM 43 C C5N NDP . . . C 2 -2.184 53.915 13.147 1 22.02 ? C5N NDP 401 A 1 HETATM 44 C C6N NDP . . . C 2 -1.949 54.498 11.89 1 18.8 ? C6N NDP 401 A 1 HETATM 45 P P2B NDP . . . C 2 0.407 66.74 3.933 1 30.17 ? P2B NDP 401 A 1 HETATM 46 O O1X NDP . . . C 2 -0.735 67.397 3.264 1 30.58 ? O1X NDP 401 A 1 HETATM 47 O O2X NDP . . . C 2 0.72 67.33 5.251 1 29.16 ? O2X NDP 401 A 1 HETATM 48 O O3X NDP . . . C 2 1.589 66.629 3.043 1 24.97 ? O3X NDP 401 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 48 #