data_3DAT
#
_model_server_result.job_id            edhAVXCisYsHlfMNdP60uA 
_model_server_result.datetime_utc      '2024-11-27 01:16:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dat 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    3DAT 
#
_exptl.entry_id    3DAT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.31 
_cell.angle_gamma         90 
_cell.entry_id            3DAT 
_cell.length_a            81.9 
_cell.length_b            43.156 
_cell.length_c            67.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DAT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     3DAT 
_atom_sites.fract_transf_matrix[1][1]    0.01221 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006854 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTX A 1 201 201 MTX MTX . 
C 3 NDP A 1 202 202 NDP NAP . 
D 4 HOH A 1 203 1 HOH HOH . 
D 4 HOH A 2 204 2 HOH HOH . 
D 4 HOH A 3 205 3 HOH HOH . 
D 4 HOH A 4 206 4 HOH HOH . 
D 4 HOH A 5 207 5 HOH HOH . 
D 4 HOH A 6 208 6 HOH HOH . 
D 4 HOH A 7 209 7 HOH HOH . 
D 4 HOH A 8 210 8 HOH HOH . 
D 4 HOH A 9 211 9 HOH HOH . 
D 4 HOH A 10 212 10 HOH HOH . 
D 4 HOH A 11 213 11 HOH HOH . 
D 4 HOH A 12 214 12 HOH HOH . 
D 4 HOH A 13 215 13 HOH HOH . 
D 4 HOH A 14 216 14 HOH HOH . 
D 4 HOH A 15 217 16 HOH HOH . 
D 4 HOH A 16 218 17 HOH HOH . 
D 4 HOH A 17 219 18 HOH HOH . 
D 4 HOH A 18 220 20 HOH HOH . 
D 4 HOH A 19 221 21 HOH HOH . 
D 4 HOH A 20 222 22 HOH HOH . 
D 4 HOH A 21 223 24 HOH HOH . 
D 4 HOH A 22 224 25 HOH HOH . 
D 4 HOH A 23 225 26 HOH HOH . 
D 4 HOH A 24 226 30 HOH HOH . 
D 4 HOH A 25 227 31 HOH HOH . 
D 4 HOH A 26 228 32 HOH HOH . 
D 4 HOH A 27 229 33 HOH HOH . 
D 4 HOH A 28 230 34 HOH HOH . 
D 4 HOH A 29 231 35 HOH HOH . 
D 4 HOH A 30 232 36 HOH HOH . 
D 4 HOH A 31 233 37 HOH HOH . 
D 4 HOH A 32 234 38 HOH HOH . 
D 4 HOH A 33 235 39 HOH HOH . 
D 4 HOH A 34 236 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . B 2 -3.942 -6.553 17.579 1 33.12 ? N1 MTX 201 A 1 
HETATM 2 C C2 MTX . . . B 2 -4.332 -7.83 17.416 1 33.4 ? C2 MTX 201 A 1 
HETATM 3 N NA2 MTX . . . B 2 -3.715 -8.714 18.157 1 34.9 ? NA2 MTX 201 A 1 
HETATM 4 N N3 MTX . . . B 2 -5.315 -8.182 16.503 1 34.73 ? N3 MTX 201 A 1 
HETATM 5 C C4 MTX . . . B 2 -5.924 -7.208 15.744 1 34.46 ? C4 MTX 201 A 1 
HETATM 6 N NA4 MTX . . . B 2 -6.949 -7.523 14.942 1 36.93 ? NA4 MTX 201 A 1 
HETATM 7 C C4A MTX . . . B 2 -5.529 -5.882 15.918 1 33.28 ? C4A MTX 201 A 1 
HETATM 8 N N5 MTX . . . B 2 -6.095 -4.872 15.179 1 32.62 ? N5 MTX 201 A 1 
HETATM 9 C C6 MTX . . . B 2 -5.709 -3.562 15.36 1 34.25 ? C6 MTX 201 A 1 
HETATM 10 C C7 MTX . . . B 2 -4.719 -3.239 16.291 1 35.62 ? C7 MTX 201 A 1 
HETATM 11 N N8 MTX . . . B 2 -4.119 -4.253 17.026 1 34.59 ? N8 MTX 201 A 1 
HETATM 12 C C8A MTX . . . B 2 -4.532 -5.56 16.844 1 33.93 ? C8A MTX 201 A 1 
HETATM 13 C C9 MTX . . . B 2 -6.401 -2.518 14.527 1 36.19 ? C9 MTX 201 A 1 
HETATM 14 N N10 MTX . . . B 2 -5.731 -1.244 14.473 1 47.62 ? N10 MTX 201 A 1 
HETATM 15 C CM MTX . . . B 2 -6.594 -0.088 14.806 1 47.2 ? CM MTX 201 A 1 
HETATM 16 C C11 MTX . . . B 2 -2.036 -0.825 12.39 1 50.18 ? C11 MTX 201 A 1 
HETATM 17 C C12 MTX . . . B 2 -2.681 0.331 12.867 1 48.5 ? C12 MTX 201 A 1 
HETATM 18 C C13 MTX . . . B 2 -3.905 0.201 13.545 1 47.27 ? C13 MTX 201 A 1 
HETATM 19 C C14 MTX . . . B 2 -4.474 -1.078 13.763 1 48.67 ? C14 MTX 201 A 1 
HETATM 20 C C15 MTX . . . B 2 -3.789 -2.21 13.288 1 47.92 ? C15 MTX 201 A 1 
HETATM 21 C C16 MTX . . . B 2 -2.672 -2.068 12.463 1 49.67 ? C16 MTX 201 A 1 
HETATM 22 C C MTX . . . B 2 -0.719 -0.777 11.67 1 50.25 ? C MTX 201 A 1 
HETATM 23 O O MTX . . . B 2 -0.282 0.37 10.959 1 50.71 ? O MTX 201 A 1 
HETATM 24 N N MTX . . . B 2 0.027 -1.87 11.777 1 52.3 ? N MTX 201 A 1 
HETATM 25 C CA MTX . . . B 2 1.13 -2.127 10.876 1 54.1 ? CA MTX 201 A 1 
HETATM 26 C CT MTX . . . B 2 0.843 -3.345 10.038 1 53.97 ? CT MTX 201 A 1 
HETATM 27 O O1 MTX . . . B 2 0.418 -4.4 10.564 1 54.81 ? O1 MTX 201 A 1 
HETATM 28 O O2 MTX . . . B 2 1.016 -3.295 8.798 1 54.67 ? O2 MTX 201 A 1 
HETATM 29 C CB MTX . . . B 2 2.456 -2.25 11.64 1 54.7 ? CB MTX 201 A 1 
HETATM 30 C CG MTX . . . B 2 2.886 -0.93 12.297 1 57.65 ? CG MTX 201 A 1 
HETATM 31 C CD MTX . . . B 2 2.923 0.266 11.354 1 62.09 ? CD MTX 201 A 1 
HETATM 32 O OE1 MTX . . . B 2 3.082 0.114 10.113 1 64.83 ? OE1 MTX 201 A 1 
HETATM 33 O OE2 MTX . . . B 2 2.806 1.442 11.797 1 62.61 ? OE2 MTX 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#