data_3DAU # _model_server_result.job_id t_y5o9oCAaTdybLSAHBoqQ _model_server_result.datetime_utc '2024-11-13 05:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3DAU # _exptl.entry_id 3DAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DAU _cell.length_a 61.847 _cell.length_b 61.847 _cell.length_c 104.74 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 3DAU _atom_sites.fract_transf_matrix[1][1] 0.016169 _atom_sites.fract_transf_matrix[1][2] 0.009335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 201 201 MTX MTX . C 3 NDP A 1 202 202 NDP NAP . D 4 HOH A 1 203 2 HOH HOH . D 4 HOH A 2 204 6 HOH HOH . D 4 HOH A 3 205 7 HOH HOH . D 4 HOH A 4 206 8 HOH HOH . D 4 HOH A 5 207 10 HOH HOH . D 4 HOH A 6 208 12 HOH HOH . D 4 HOH A 7 209 13 HOH HOH . D 4 HOH A 8 210 14 HOH HOH . D 4 HOH A 9 211 15 HOH HOH . D 4 HOH A 10 212 16 HOH HOH . D 4 HOH A 11 213 17 HOH HOH . D 4 HOH A 12 214 19 HOH HOH . D 4 HOH A 13 215 20 HOH HOH . D 4 HOH A 14 216 22 HOH HOH . D 4 HOH A 15 217 23 HOH HOH . D 4 HOH A 16 218 24 HOH HOH . D 4 HOH A 17 219 25 HOH HOH . D 4 HOH A 18 220 26 HOH HOH . D 4 HOH A 19 221 27 HOH HOH . D 4 HOH A 20 222 28 HOH HOH . D 4 HOH A 21 223 29 HOH HOH . D 4 HOH A 22 224 30 HOH HOH . D 4 HOH A 23 225 31 HOH HOH . D 4 HOH A 24 226 32 HOH HOH . D 4 HOH A 25 227 33 HOH HOH . D 4 HOH A 26 228 34 HOH HOH . D 4 HOH A 27 229 35 HOH HOH . D 4 HOH A 28 230 36 HOH HOH . D 4 HOH A 29 231 39 HOH HOH . D 4 HOH A 30 232 40 HOH HOH . D 4 HOH A 31 233 41 HOH HOH . D 4 HOH A 32 234 42 HOH HOH . D 4 HOH A 33 235 43 HOH HOH . D 4 HOH A 34 236 44 HOH HOH . D 4 HOH A 35 237 45 HOH HOH . D 4 HOH A 36 238 46 HOH HOH . D 4 HOH A 37 239 47 HOH HOH . D 4 HOH A 38 240 48 HOH HOH . D 4 HOH A 39 241 49 HOH HOH . D 4 HOH A 40 242 51 HOH HOH . D 4 HOH A 41 243 53 HOH HOH . D 4 HOH A 42 244 54 HOH HOH . D 4 HOH A 43 245 55 HOH HOH . D 4 HOH A 44 246 56 HOH HOH . D 4 HOH A 45 247 57 HOH HOH . D 4 HOH A 46 248 58 HOH HOH . D 4 HOH A 47 249 59 HOH HOH . D 4 HOH A 48 250 60 HOH HOH . D 4 HOH A 49 251 61 HOH HOH . D 4 HOH A 50 252 62 HOH HOH . D 4 HOH A 51 253 63 HOH HOH . D 4 HOH A 52 254 64 HOH HOH . D 4 HOH A 53 255 65 HOH HOH . D 4 HOH A 54 256 66 HOH HOH . D 4 HOH A 55 257 67 HOH HOH . D 4 HOH A 56 258 68 HOH HOH . D 4 HOH A 57 259 69 HOH HOH . D 4 HOH A 58 260 70 HOH HOH . D 4 HOH A 59 261 71 HOH HOH . D 4 HOH A 60 262 72 HOH HOH . D 4 HOH A 61 263 73 HOH HOH . D 4 HOH A 62 264 74 HOH HOH . D 4 HOH A 63 265 75 HOH HOH . D 4 HOH A 64 266 76 HOH HOH . D 4 HOH A 65 267 77 HOH HOH . D 4 HOH A 66 268 78 HOH HOH . D 4 HOH A 67 269 81 HOH HOH . D 4 HOH A 68 270 82 HOH HOH . D 4 HOH A 69 271 83 HOH HOH . D 4 HOH A 70 272 84 HOH HOH . D 4 HOH A 71 273 85 HOH HOH . D 4 HOH A 72 274 86 HOH HOH . D 4 HOH A 73 275 88 HOH HOH . D 4 HOH A 74 276 89 HOH HOH . D 4 HOH A 75 277 90 HOH HOH . D 4 HOH A 76 278 91 HOH HOH . D 4 HOH A 77 279 92 HOH HOH . D 4 HOH A 78 280 93 HOH HOH . D 4 HOH A 79 281 96 HOH HOH . D 4 HOH A 80 282 98 HOH HOH . D 4 HOH A 81 283 99 HOH HOH . D 4 HOH A 82 284 100 HOH HOH . D 4 HOH A 83 285 101 HOH HOH . D 4 HOH A 84 286 102 HOH HOH . D 4 HOH A 85 287 103 HOH HOH . D 4 HOH A 86 288 104 HOH HOH . D 4 HOH A 87 289 105 HOH HOH . D 4 HOH A 88 290 106 HOH HOH . D 4 HOH A 89 291 107 HOH HOH . D 4 HOH A 90 292 109 HOH HOH . D 4 HOH A 91 293 111 HOH HOH . D 4 HOH A 92 294 112 HOH HOH . D 4 HOH A 93 295 113 HOH HOH . D 4 HOH A 94 296 114 HOH HOH . D 4 HOH A 95 297 115 HOH HOH . D 4 HOH A 96 298 116 HOH HOH . D 4 HOH A 97 299 117 HOH HOH . D 4 HOH A 98 300 118 HOH HOH . D 4 HOH A 99 301 119 HOH HOH . D 4 HOH A 100 302 120 HOH HOH . D 4 HOH A 101 303 121 HOH HOH . D 4 HOH A 102 304 122 HOH HOH . D 4 HOH A 103 305 125 HOH HOH . D 4 HOH A 104 306 126 HOH HOH . D 4 HOH A 105 307 127 HOH HOH . D 4 HOH A 106 308 129 HOH HOH . D 4 HOH A 107 309 131 HOH HOH . D 4 HOH A 108 310 132 HOH HOH . D 4 HOH A 109 311 133 HOH HOH . D 4 HOH A 110 312 134 HOH HOH . D 4 HOH A 111 313 135 HOH HOH . D 4 HOH A 112 314 137 HOH HOH . D 4 HOH A 113 315 139 HOH HOH . D 4 HOH A 114 316 140 HOH HOH . D 4 HOH A 115 317 144 HOH HOH . D 4 HOH A 116 318 147 HOH HOH . D 4 HOH A 117 319 149 HOH HOH . D 4 HOH A 118 320 151 HOH HOH . D 4 HOH A 119 321 154 HOH HOH . D 4 HOH A 120 322 155 HOH HOH . D 4 HOH A 121 323 156 HOH HOH . D 4 HOH A 122 324 158 HOH HOH . D 4 HOH A 123 325 159 HOH HOH . D 4 HOH A 124 326 164 HOH HOH . D 4 HOH A 125 327 168 HOH HOH . D 4 HOH A 126 328 169 HOH HOH . D 4 HOH A 127 329 172 HOH HOH . D 4 HOH A 128 330 177 HOH HOH . D 4 HOH A 129 331 179 HOH HOH . D 4 HOH A 130 332 180 HOH HOH . D 4 HOH A 131 333 181 HOH HOH . D 4 HOH A 132 334 187 HOH HOH . D 4 HOH A 133 335 192 HOH HOH . D 4 HOH A 134 336 193 HOH HOH . D 4 HOH A 135 337 196 HOH HOH . D 4 HOH A 136 338 199 HOH HOH . D 4 HOH A 137 339 205 HOH HOH . D 4 HOH A 138 340 206 HOH HOH . D 4 HOH A 139 341 207 HOH HOH . D 4 HOH A 140 342 208 HOH HOH . D 4 HOH A 141 343 212 HOH HOH . D 4 HOH A 142 344 213 HOH HOH . D 4 HOH A 143 345 215 HOH HOH . D 4 HOH A 144 346 216 HOH HOH . D 4 HOH A 145 347 230 HOH HOH . D 4 HOH A 146 348 232 HOH HOH . D 4 HOH A 147 349 233 HOH HOH . D 4 HOH A 148 350 236 HOH HOH . D 4 HOH A 149 351 237 HOH HOH . D 4 HOH A 150 352 240 HOH HOH . D 4 HOH A 151 353 242 HOH HOH . D 4 HOH A 152 354 259 HOH HOH . D 4 HOH A 153 355 282 HOH HOH . D 4 HOH A 154 356 286 HOH HOH . D 4 HOH A 155 357 287 HOH HOH . D 4 HOH A 156 358 288 HOH HOH . D 4 HOH A 157 359 289 HOH HOH . D 4 HOH A 158 360 290 HOH HOH . D 4 HOH A 159 361 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . B 2 27.488 5.707 -20.624 1 16.51 ? N1 MTX 201 A 1 HETATM 2 C C2 MTX . . . B 2 26.539 4.722 -20.648 1 16.07 ? C2 MTX 201 A 1 HETATM 3 N NA2 MTX . . . B 2 25.941 4.449 -21.796 1 17.89 ? NA2 MTX 201 A 1 HETATM 4 N N3 MTX . . . B 2 26.284 3.988 -19.515 1 17.31 ? N3 MTX 201 A 1 HETATM 5 C C4 MTX . . . B 2 26.871 4.292 -18.31 1 17.52 ? C4 MTX 201 A 1 HETATM 6 N NA4 MTX . . . B 2 26.613 3.508 -17.227 1 18.76 ? NA4 MTX 201 A 1 HETATM 7 C C4A MTX . . . B 2 27.786 5.354 -18.279 1 16.08 ? C4A MTX 201 A 1 HETATM 8 N N5 MTX . . . B 2 28.336 5.754 -17.083 1 17.32 ? N5 MTX 201 A 1 HETATM 9 C C6 MTX . . . B 2 29.199 6.776 -17.02 1 18.19 ? C6 MTX 201 A 1 HETATM 10 C C7 MTX . . . B 2 29.55 7.436 -18.224 1 20.64 ? C7 MTX 201 A 1 HETATM 11 N N8 MTX . . . B 2 28.983 7.073 -19.445 1 18.99 ? N8 MTX 201 A 1 HETATM 12 C C8A MTX . . . B 2 28.07 6.059 -19.464 1 15.82 ? C8A MTX 201 A 1 HETATM 13 C C9 MTX . . . B 2 29.82 7.082 -15.667 1 19.76 ? C9 MTX 201 A 1 HETATM 14 N N10 MTX . . . B 2 30.356 8.444 -15.677 1 21.63 ? N10 MTX 201 A 1 HETATM 15 C CM MTX . . . B 2 31.778 8.672 -15.472 1 23.1 ? CM MTX 201 A 1 HETATM 16 C C11 MTX . . . B 2 27.968 11.781 -16.406 1 20.83 ? C11 MTX 201 A 1 HETATM 17 C C12 MTX . . . B 2 29.36 11.934 -16.257 1 20.57 ? C12 MTX 201 A 1 HETATM 18 C C13 MTX . . . B 2 30.173 10.838 -16.032 1 20.79 ? C13 MTX 201 A 1 HETATM 19 C C14 MTX . . . B 2 29.523 9.584 -15.907 1 20.67 ? C14 MTX 201 A 1 HETATM 20 C C15 MTX . . . B 2 28.13 9.428 -16.031 1 20.27 ? C15 MTX 201 A 1 HETATM 21 C C16 MTX . . . B 2 27.323 10.538 -16.284 1 21.55 ? C16 MTX 201 A 1 HETATM 22 C C MTX . . . B 2 27.078 12.973 -16.674 1 22.78 ? C MTX 201 A 1 HETATM 23 O O MTX . . . B 2 27.633 14.179 -16.535 1 25.82 ? O MTX 201 A 1 HETATM 24 N N MTX . . . B 2 25.836 12.823 -17.116 1 22.81 ? N MTX 201 A 1 HETATM 25 C CA MTX . . . B 2 24.897 13.937 -17.297 1 24.12 ? CA MTX 201 A 1 HETATM 26 C CT MTX . . . B 2 23.64 13.398 -16.655 1 23.3 ? CT MTX 201 A 1 HETATM 27 O O1 MTX . . . B 2 23.334 12.144 -16.641 1 21.32 ? O1 MTX 201 A 1 HETATM 28 O O2 MTX . . . B 2 22.841 14.191 -16.05 1 24.02 ? O2 MTX 201 A 1 HETATM 29 C CB MTX . . . B 2 24.654 14.294 -18.802 1 25.82 ? CB MTX 201 A 1 HETATM 30 C CG MTX . . . B 2 25.601 15.178 -19.734 1 33.62 ? CG MTX 201 A 1 HETATM 31 C CD MTX . . . B 2 25.067 15.23 -21.223 1 39.17 ? CD MTX 201 A 1 HETATM 32 O OE1 MTX . . . B 2 23.81 15.044 -21.296 1 38.05 ? OE1 MTX 201 A 1 HETATM 33 O OE2 MTX . . . B 2 25.721 15.383 -22.434 1 40.98 ? OE2 MTX 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #