data_3DAU # _model_server_result.job_id '_NKjR2QWJ8AhoS9x4begCg' _model_server_result.datetime_utc '2024-11-13 05:33:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dau # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 3DAU # _exptl.entry_id 3DAU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DAU _cell.length_a 61.847 _cell.length_b 61.847 _cell.length_c 104.74 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DAU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 3DAU _atom_sites.fract_transf_matrix[1][1] 0.016169 _atom_sites.fract_transf_matrix[1][2] 0.009335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTX A 1 201 201 MTX MTX . C 3 NDP A 1 202 202 NDP NAP . D 4 HOH A 1 203 2 HOH HOH . D 4 HOH A 2 204 6 HOH HOH . D 4 HOH A 3 205 7 HOH HOH . D 4 HOH A 4 206 8 HOH HOH . D 4 HOH A 5 207 10 HOH HOH . D 4 HOH A 6 208 12 HOH HOH . D 4 HOH A 7 209 13 HOH HOH . D 4 HOH A 8 210 14 HOH HOH . D 4 HOH A 9 211 15 HOH HOH . D 4 HOH A 10 212 16 HOH HOH . D 4 HOH A 11 213 17 HOH HOH . D 4 HOH A 12 214 19 HOH HOH . D 4 HOH A 13 215 20 HOH HOH . D 4 HOH A 14 216 22 HOH HOH . D 4 HOH A 15 217 23 HOH HOH . D 4 HOH A 16 218 24 HOH HOH . D 4 HOH A 17 219 25 HOH HOH . D 4 HOH A 18 220 26 HOH HOH . D 4 HOH A 19 221 27 HOH HOH . D 4 HOH A 20 222 28 HOH HOH . D 4 HOH A 21 223 29 HOH HOH . D 4 HOH A 22 224 30 HOH HOH . D 4 HOH A 23 225 31 HOH HOH . D 4 HOH A 24 226 32 HOH HOH . D 4 HOH A 25 227 33 HOH HOH . D 4 HOH A 26 228 34 HOH HOH . D 4 HOH A 27 229 35 HOH HOH . D 4 HOH A 28 230 36 HOH HOH . D 4 HOH A 29 231 39 HOH HOH . D 4 HOH A 30 232 40 HOH HOH . D 4 HOH A 31 233 41 HOH HOH . D 4 HOH A 32 234 42 HOH HOH . D 4 HOH A 33 235 43 HOH HOH . D 4 HOH A 34 236 44 HOH HOH . D 4 HOH A 35 237 45 HOH HOH . D 4 HOH A 36 238 46 HOH HOH . D 4 HOH A 37 239 47 HOH HOH . D 4 HOH A 38 240 48 HOH HOH . D 4 HOH A 39 241 49 HOH HOH . D 4 HOH A 40 242 51 HOH HOH . D 4 HOH A 41 243 53 HOH HOH . D 4 HOH A 42 244 54 HOH HOH . D 4 HOH A 43 245 55 HOH HOH . D 4 HOH A 44 246 56 HOH HOH . D 4 HOH A 45 247 57 HOH HOH . D 4 HOH A 46 248 58 HOH HOH . D 4 HOH A 47 249 59 HOH HOH . D 4 HOH A 48 250 60 HOH HOH . D 4 HOH A 49 251 61 HOH HOH . D 4 HOH A 50 252 62 HOH HOH . D 4 HOH A 51 253 63 HOH HOH . D 4 HOH A 52 254 64 HOH HOH . D 4 HOH A 53 255 65 HOH HOH . D 4 HOH A 54 256 66 HOH HOH . D 4 HOH A 55 257 67 HOH HOH . D 4 HOH A 56 258 68 HOH HOH . D 4 HOH A 57 259 69 HOH HOH . D 4 HOH A 58 260 70 HOH HOH . D 4 HOH A 59 261 71 HOH HOH . D 4 HOH A 60 262 72 HOH HOH . D 4 HOH A 61 263 73 HOH HOH . D 4 HOH A 62 264 74 HOH HOH . D 4 HOH A 63 265 75 HOH HOH . D 4 HOH A 64 266 76 HOH HOH . D 4 HOH A 65 267 77 HOH HOH . D 4 HOH A 66 268 78 HOH HOH . D 4 HOH A 67 269 81 HOH HOH . D 4 HOH A 68 270 82 HOH HOH . D 4 HOH A 69 271 83 HOH HOH . D 4 HOH A 70 272 84 HOH HOH . D 4 HOH A 71 273 85 HOH HOH . D 4 HOH A 72 274 86 HOH HOH . D 4 HOH A 73 275 88 HOH HOH . D 4 HOH A 74 276 89 HOH HOH . D 4 HOH A 75 277 90 HOH HOH . D 4 HOH A 76 278 91 HOH HOH . D 4 HOH A 77 279 92 HOH HOH . D 4 HOH A 78 280 93 HOH HOH . D 4 HOH A 79 281 96 HOH HOH . D 4 HOH A 80 282 98 HOH HOH . D 4 HOH A 81 283 99 HOH HOH . D 4 HOH A 82 284 100 HOH HOH . D 4 HOH A 83 285 101 HOH HOH . D 4 HOH A 84 286 102 HOH HOH . D 4 HOH A 85 287 103 HOH HOH . D 4 HOH A 86 288 104 HOH HOH . D 4 HOH A 87 289 105 HOH HOH . D 4 HOH A 88 290 106 HOH HOH . D 4 HOH A 89 291 107 HOH HOH . D 4 HOH A 90 292 109 HOH HOH . D 4 HOH A 91 293 111 HOH HOH . D 4 HOH A 92 294 112 HOH HOH . D 4 HOH A 93 295 113 HOH HOH . D 4 HOH A 94 296 114 HOH HOH . D 4 HOH A 95 297 115 HOH HOH . D 4 HOH A 96 298 116 HOH HOH . D 4 HOH A 97 299 117 HOH HOH . D 4 HOH A 98 300 118 HOH HOH . D 4 HOH A 99 301 119 HOH HOH . D 4 HOH A 100 302 120 HOH HOH . D 4 HOH A 101 303 121 HOH HOH . D 4 HOH A 102 304 122 HOH HOH . D 4 HOH A 103 305 125 HOH HOH . D 4 HOH A 104 306 126 HOH HOH . D 4 HOH A 105 307 127 HOH HOH . D 4 HOH A 106 308 129 HOH HOH . D 4 HOH A 107 309 131 HOH HOH . D 4 HOH A 108 310 132 HOH HOH . D 4 HOH A 109 311 133 HOH HOH . D 4 HOH A 110 312 134 HOH HOH . D 4 HOH A 111 313 135 HOH HOH . D 4 HOH A 112 314 137 HOH HOH . D 4 HOH A 113 315 139 HOH HOH . D 4 HOH A 114 316 140 HOH HOH . D 4 HOH A 115 317 144 HOH HOH . D 4 HOH A 116 318 147 HOH HOH . D 4 HOH A 117 319 149 HOH HOH . D 4 HOH A 118 320 151 HOH HOH . D 4 HOH A 119 321 154 HOH HOH . D 4 HOH A 120 322 155 HOH HOH . D 4 HOH A 121 323 156 HOH HOH . D 4 HOH A 122 324 158 HOH HOH . D 4 HOH A 123 325 159 HOH HOH . D 4 HOH A 124 326 164 HOH HOH . D 4 HOH A 125 327 168 HOH HOH . D 4 HOH A 126 328 169 HOH HOH . D 4 HOH A 127 329 172 HOH HOH . D 4 HOH A 128 330 177 HOH HOH . D 4 HOH A 129 331 179 HOH HOH . D 4 HOH A 130 332 180 HOH HOH . D 4 HOH A 131 333 181 HOH HOH . D 4 HOH A 132 334 187 HOH HOH . D 4 HOH A 133 335 192 HOH HOH . D 4 HOH A 134 336 193 HOH HOH . D 4 HOH A 135 337 196 HOH HOH . D 4 HOH A 136 338 199 HOH HOH . D 4 HOH A 137 339 205 HOH HOH . D 4 HOH A 138 340 206 HOH HOH . D 4 HOH A 139 341 207 HOH HOH . D 4 HOH A 140 342 208 HOH HOH . D 4 HOH A 141 343 212 HOH HOH . D 4 HOH A 142 344 213 HOH HOH . D 4 HOH A 143 345 215 HOH HOH . D 4 HOH A 144 346 216 HOH HOH . D 4 HOH A 145 347 230 HOH HOH . D 4 HOH A 146 348 232 HOH HOH . D 4 HOH A 147 349 233 HOH HOH . D 4 HOH A 148 350 236 HOH HOH . D 4 HOH A 149 351 237 HOH HOH . D 4 HOH A 150 352 240 HOH HOH . D 4 HOH A 151 353 242 HOH HOH . D 4 HOH A 152 354 259 HOH HOH . D 4 HOH A 153 355 282 HOH HOH . D 4 HOH A 154 356 286 HOH HOH . D 4 HOH A 155 357 287 HOH HOH . D 4 HOH A 156 358 288 HOH HOH . D 4 HOH A 157 359 289 HOH HOH . D 4 HOH A 158 360 290 HOH HOH . D 4 HOH A 159 361 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 33.429 0.313 -9.545 1 23.48 ? PA NDP 202 A 1 HETATM 2 O O1A NDP . . . C 3 32.563 -0.828 -9.825 1 23.72 ? O1A NDP 202 A 1 HETATM 3 O O2A NDP . . . C 3 33.015 1.663 -10.022 1 23.61 ? O2A NDP 202 A 1 HETATM 4 O O5B NDP . . . C 3 33.625 0.479 -7.984 1 25.03 ? O5B NDP 202 A 1 HETATM 5 C C5B NDP . . . C 3 34.209 -0.601 -7.226 1 25.52 ? C5B NDP 202 A 1 HETATM 6 C C4B NDP . . . C 3 33.988 -0.254 -5.753 1 25.22 ? C4B NDP 202 A 1 HETATM 7 O O4B NDP . . . C 3 32.593 -0.306 -5.385 1 25.34 ? O4B NDP 202 A 1 HETATM 8 C C3B NDP . . . C 3 34.599 -1.295 -4.811 1 27.28 ? C3B NDP 202 A 1 HETATM 9 O O3B NDP . . . C 3 35.987 -0.993 -4.682 1 30 ? O3B NDP 202 A 1 HETATM 10 C C2B NDP . . . C 3 33.81 -1.059 -3.549 1 28.41 ? C2B NDP 202 A 1 HETATM 11 O O2B NDP . . . C 3 34.249 0.14 -2.932 1 28.94 ? O2B NDP 202 A 1 HETATM 12 C C1B NDP . . . C 3 32.427 -0.871 -4.105 1 25.81 ? C1B NDP 202 A 1 HETATM 13 N N9A NDP . . . C 3 31.66 -2.1 -4.199 1 25.96 ? N9A NDP 202 A 1 HETATM 14 C C8A NDP . . . C 3 31.321 -2.827 -5.341 1 24.99 ? C8A NDP 202 A 1 HETATM 15 N N7A NDP . . . C 3 30.545 -3.894 -5.01 1 26.66 ? N7A NDP 202 A 1 HETATM 16 C C5A NDP . . . C 3 30.421 -3.847 -3.635 1 26.31 ? C5A NDP 202 A 1 HETATM 17 C C6A NDP . . . C 3 29.8 -4.643 -2.708 1 26.88 ? C6A NDP 202 A 1 HETATM 18 N N6A NDP . . . C 3 29.11 -5.719 -3.054 1 27.61 ? N6A NDP 202 A 1 HETATM 19 N N1A NDP . . . C 3 29.824 -4.233 -1.406 1 27.67 ? N1A NDP 202 A 1 HETATM 20 C C2A NDP . . . C 3 30.533 -3.165 -0.939 1 27.58 ? C2A NDP 202 A 1 HETATM 21 N N3A NDP . . . C 3 31.151 -2.334 -1.801 1 27.6 ? N3A NDP 202 A 1 HETATM 22 C C4A NDP . . . C 3 31.111 -2.719 -3.134 1 25.09 ? C4A NDP 202 A 1 HETATM 23 O O3 NDP . . . C 3 34.954 -0.026 -9.938 1 25.34 ? O3 NDP 202 A 1 HETATM 24 P PN NDP . . . C 3 35.711 -0.749 -11.148 1 24.95 ? PN NDP 202 A 1 HETATM 25 O O1N NDP . . . C 3 35.18 -2.146 -11.299 1 27.97 ? O1N NDP 202 A 1 HETATM 26 O O2N NDP . . . C 3 37.163 -0.421 -10.959 1 26.51 ? O2N NDP 202 A 1 HETATM 27 O O5D NDP . . . C 3 35.153 0.004 -12.448 1 23.07 ? O5D NDP 202 A 1 HETATM 28 C C5D NDP . . . C 3 35.527 1.335 -12.691 1 22.2 ? C5D NDP 202 A 1 HETATM 29 C C4D NDP . . . C 3 35.874 1.483 -14.147 1 23.55 ? C4D NDP 202 A 1 HETATM 30 O O4D NDP . . . C 3 34.707 1.293 -14.924 1 22.75 ? O4D NDP 202 A 1 HETATM 31 C C3D NDP . . . C 3 36.51 2.792 -14.537 1 22.01 ? C3D NDP 202 A 1 HETATM 32 O O3D NDP . . . C 3 37.463 2.61 -15.596 1 23.57 ? O3D NDP 202 A 1 HETATM 33 C C2D NDP . . . C 3 35.298 3.551 -15.109 1 20.06 ? C2D NDP 202 A 1 HETATM 34 O O2D NDP . . . C 3 35.647 4.518 -16.069 1 22.42 ? O2D NDP 202 A 1 HETATM 35 C C1D NDP . . . C 3 34.567 2.412 -15.8 1 21.21 ? C1D NDP 202 A 1 HETATM 36 N N1N NDP . . . C 3 33.122 2.605 -16.035 1 19.43 ? N1N NDP 202 A 1 HETATM 37 C C2N NDP . . . C 3 32.659 2.431 -17.316 1 18.67 ? C2N NDP 202 A 1 HETATM 38 C C3N NDP . . . C 3 31.311 2.611 -17.586 1 17.3 ? C3N NDP 202 A 1 HETATM 39 C C7N NDP . . . C 3 30.95 2.407 -18.991 1 17.75 ? C7N NDP 202 A 1 HETATM 40 O O7N NDP . . . C 3 29.669 2.247 -19.219 1 21.26 ? O7N NDP 202 A 1 HETATM 41 N N7N NDP . . . C 3 31.765 2.415 -20.031 1 18.17 ? N7N NDP 202 A 1 HETATM 42 C C4N NDP . . . C 3 30.313 2.993 -16.576 1 18.44 ? C4N NDP 202 A 1 HETATM 43 C C5N NDP . . . C 3 30.868 3.174 -15.272 1 19.51 ? C5N NDP 202 A 1 HETATM 44 C C6N NDP . . . C 3 32.249 2.983 -14.982 1 20.69 ? C6N NDP 202 A 1 HETATM 45 P P2B NDP . . . C 3 35.221 0.246 -1.634 1 29.74 ? P2B NDP 202 A 1 HETATM 46 O O1X NDP . . . C 3 35.042 1.628 -1.051 1 31.07 ? O1X NDP 202 A 1 HETATM 47 O O2X NDP . . . C 3 34.732 -0.876 -0.742 1 31.25 ? O2X NDP 202 A 1 HETATM 48 O O3X NDP . . . C 3 36.602 0.094 -2.233 1 31.69 ? O3X NDP 202 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #