data_3DB6 # _model_server_result.job_id 1foNBBPzTHFARlQewr0cYA _model_server_result.datetime_utc '2025-04-25 19:11:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3db6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3DB6 # _exptl.entry_id 3DB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.454 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-methyl-2-(trifluoromethyl)furan-3-yl]-3-[(2Z)-5-(2-{[6-(1H-1,2,4-triazol-3-ylamino)pyrimidin-4-yl]amino}ethyl)-1,3-thiazol-2(3H)-ylidene]urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DB6 _cell.length_a 135.129 _cell.length_b 135.129 _cell.length_c 135.129 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H17 F3 N10 O2 S' _chem_comp.formula_weight 494.454 _chem_comp.id FRS _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-methyl-2-(trifluoromethyl)furan-3-yl]-3-[(2Z)-5-(2-{[6-(1H-1,2,4-triazol-3-ylamino)pyrimidin-4-yl]amino}ethyl)-1,3-thiazol-2(3H)-ylidene]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N33 N35 FRS sing 83 n y N33 C32 FRS sing 84 n y N29 C30 FRS sing 85 n n N29 C28 FRS sing 86 n n N29 HN29 FRS sing 87 n n C30 N35 FRS doub 88 n y C30 N31 FRS sing 89 n y C28 C27 FRS doub 90 n y C28 N26 FRS sing 91 n y C27 C23 FRS sing 92 n y C27 H27 FRS sing 93 n n C23 N22 FRS sing 94 n n C23 N24 FRS doub 95 n y C20 C19 FRS sing 96 n n C20 C21 FRS sing 97 n n C20 H20 FRS sing 98 n n C20 H20A FRS sing 99 n n C15 N14 FRS doub 100 n n C15 N17 FRS sing 101 n n C15 S16 FRS sing 102 n n C12 O13 FRS doub 103 n n C12 N11 FRS sing 104 n n C12 N14 FRS sing 105 n n C10 C5 FRS doub 106 n y C10 C3 FRS sing 107 n y C10 N11 FRS sing 108 n n C5 C6 FRS sing 109 n n C5 O4 FRS sing 110 n y C6 F9 FRS sing 111 n n C6 F8 FRS sing 112 n n C6 F7 FRS sing 113 n n C3 C2 FRS doub 114 n y C3 H3 FRS sing 115 n n C2 C1 FRS sing 116 n n C2 O4 FRS sing 117 n y C1 H1 FRS sing 118 n n C1 H1A FRS sing 119 n n C1 H1B FRS sing 120 n n N11 HN11 FRS sing 121 n n N17 C18 FRS sing 122 n n N17 HN17 FRS sing 123 n n C18 C19 FRS doub 124 n n C18 H18 FRS sing 125 n n C19 S16 FRS sing 126 n n C21 N22 FRS sing 127 n n C21 H21 FRS sing 128 n n C21 H21A FRS sing 129 n n N22 HN22 FRS sing 130 n n N26 C25 FRS doub 131 n y C25 N24 FRS sing 132 n y C25 H25 FRS sing 133 n n C32 N31 FRS doub 134 n y C32 H32 FRS sing 135 n n N33 H17 FRS sing 136 n n # _atom_sites.entry_id 3DB6 _atom_sites.fract_transf_matrix[1][1] 0.0074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FRS A 1 1 1 FRS FRS . C 3 HOH A 1 313 1 HOH HOH . C 3 HOH A 2 314 2 HOH HOH . C 3 HOH A 3 315 3 HOH HOH . C 3 HOH A 4 316 4 HOH HOH . C 3 HOH A 5 317 5 HOH HOH . C 3 HOH A 6 318 6 HOH HOH . C 3 HOH A 7 319 7 HOH HOH . C 3 HOH A 8 320 8 HOH HOH . C 3 HOH A 9 321 9 HOH HOH . C 3 HOH A 10 322 10 HOH HOH . C 3 HOH A 11 323 11 HOH HOH . C 3 HOH A 12 324 12 HOH HOH . C 3 HOH A 13 325 13 HOH HOH . C 3 HOH A 14 326 14 HOH HOH . C 3 HOH A 15 327 15 HOH HOH . C 3 HOH A 16 328 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N33 FRS . . . B 2 86.289 78.394 18.534 1 45.38 ? N33 FRS 1 A 1 HETATM 2 N N29 FRS . . . B 2 89.251 80.12 17.993 1 44.9 ? N29 FRS 1 A 1 HETATM 3 C C30 FRS . . . B 2 88.235 79.304 18.41 1 44.82 ? C30 FRS 1 A 1 HETATM 4 C C28 FRS . . . B 2 90.422 80.381 18.643 1 44.96 ? C28 FRS 1 A 1 HETATM 5 C C27 FRS . . . B 2 90.775 79.82 19.871 1 44.14 ? C27 FRS 1 A 1 HETATM 6 C C23 FRS . . . B 2 92.011 80.158 20.434 1 44.63 ? C23 FRS 1 A 1 HETATM 7 C C20 FRS . . . B 2 92.164 77.339 22.299 1 47.15 ? C20 FRS 1 A 1 HETATM 8 C C15 FRS . . . B 2 90.326 75.546 25.225 1 47.38 ? C15 FRS 1 A 1 HETATM 9 C C12 FRS . . . B 2 88.26 75.58 26.412 1 47.84 ? C12 FRS 1 A 1 HETATM 10 C C10 FRS . . . B 2 86.305 75.414 27.729 1 48.33 ? C10 FRS 1 A 1 HETATM 11 C C5 FRS . . . B 2 85.857 75.837 28.954 1 49.94 ? C5 FRS 1 A 1 HETATM 12 C C6 FRS . . . B 2 86.426 76.056 30.308 1 50.95 ? C6 FRS 1 A 1 HETATM 13 C C3 FRS . . . B 2 85.299 75.373 26.751 1 50.27 ? C3 FRS 1 A 1 HETATM 14 C C2 FRS . . . B 2 84.189 75.795 27.461 1 50.83 ? C2 FRS 1 A 1 HETATM 15 C C1 FRS . . . B 2 82.773 75.997 27.083 1 50.93 ? C1 FRS 1 A 1 HETATM 16 O O13 FRS . . . B 2 87.812 76.493 25.738 1 48.04 ? O13 FRS 1 A 1 HETATM 17 N N11 FRS . . . B 2 87.546 75.03 27.402 1 47.84 ? N11 FRS 1 A 1 HETATM 18 F F9 FRS . . . B 2 87.592 76.666 30.236 1 52.29 ? F9 FRS 1 A 1 HETATM 19 F F8 FRS . . . B 2 86.584 74.882 30.882 1 50.17 ? F8 FRS 1 A 1 HETATM 20 F F7 FRS . . . B 2 85.607 76.789 31.038 1 51.88 ? F7 FRS 1 A 1 HETATM 21 O O4 FRS . . . B 2 84.51 76.068 28.77 1 50.2 ? O4 FRS 1 A 1 HETATM 22 N N14 FRS . . . B 2 89.484 75.089 26.193 1 47.24 ? N14 FRS 1 A 1 HETATM 23 N N17 FRS . . . B 2 91.507 74.966 25.124 1 48.06 ? N17 FRS 1 A 1 HETATM 24 C C18 FRS . . . B 2 92.238 75.547 24.093 1 47.65 ? C18 FRS 1 A 1 HETATM 25 C C19 FRS . . . B 2 91.586 76.561 23.431 1 47.39 ? C19 FRS 1 A 1 HETATM 26 S S16 FRS . . . B 2 90.011 76.819 24.097 1 46.67 ? S16 FRS 1 A 1 HETATM 27 C C21 FRS . . . B 2 91.557 78.731 22.36 1 45.2 ? C21 FRS 1 A 1 HETATM 28 N N22 FRS . . . B 2 92.416 79.642 21.623 1 44.54 ? N22 FRS 1 A 1 HETATM 29 N N26 FRS . . . B 2 91.29 81.232 18.046 1 44.94 ? N26 FRS 1 A 1 HETATM 30 C C25 FRS . . . B 2 92.467 81.544 18.607 1 44.75 ? C25 FRS 1 A 1 HETATM 31 N N24 FRS . . . B 2 92.83 81.016 19.784 1 44.68 ? N24 FRS 1 A 1 HETATM 32 N N35 FRS . . . B 2 87.026 79.368 17.839 1 44.69 ? N35 FRS 1 A 1 HETATM 33 C C32 FRS . . . B 2 87.108 77.823 19.459 1 46.87 ? C32 FRS 1 A 1 HETATM 34 N N31 FRS . . . B 2 88.34 78.39 19.388 1 46.67 ? N31 FRS 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 34 #