data_3DB7 # _model_server_result.job_id 9hMcMkdH9bmoU50YNRIeyg _model_server_result.datetime_utc '2024-12-31 04:40:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3db7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2}' # _entry.id 3DB7 # _exptl.entry_id 3DB7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.27 _cell.angle_gamma 90 _cell.entry_id 3DB7 _cell.length_a 66.17 _cell.length_b 48.42 _cell.length_c 44.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DB7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 12 A GLN 30 1_555 A N MSE 13 A MSE 31 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C GLN 12 A GLN 30 1_555 A N MSE 13 A MSE 31 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.313 ? covale ? covale3 A C MSE 13 A MSE 31 1_555 A N PRO 14 A PRO 32 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 A C MSE 13 A MSE 31 1_555 A N PRO 14 A PRO 32 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C LYS 34 A LYS 52 1_555 A N MSE 35 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 A C MSE 35 A MSE 53 1_555 A N GLU 36 A GLU 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 B CA CA . A CA 1 1_555 A OE1 GLU 36 A GLU 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 B CA CA . A CA 1 1_555 A OE2 GLU 36 A GLU 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 B CA CA . A CA 1 1_555 A OE2 GLU 45 A GLU 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 B CA CA . A CA 1 1_555 A OE1 GLU 55 A GLU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 B CA CA . A CA 1 1_555 A OE2 GLU 55 A GLU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 C CA CA . A CA 2 1_555 A OE1 GLU 55 A GLU 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 C CA CA . A CA 2 1_555 A OE1 GLU 64 A GLU 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc8 C CA CA . A CA 2 1_555 G O HOH . A HOH 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc9 C CA CA . A CA 2 1_555 G O HOH . A HOH 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc10 D CA CA . A CA 3 1_555 F O2 EDO . A EDO 5 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.497 ? metalc ? metalc11 D CA CA . A CA 3 1_555 F O2 EDO . A EDO 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.519 ? metalc ? metalc12 D CA CA . A CA 3 1_555 F O1 EDO . A EDO 5 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.46 ? metalc ? metalc13 D CA CA . A CA 3 1_555 A OE2 GLU 105 A GLU 123 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.292 ? metalc ? metalc14 D CA CA . A CA 3 1_555 G O HOH . A HOH 336 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 D CA CA . A CA 3 1_555 G O HOH . A HOH 337 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.386 ? metalc ? metalc16 D CA CA . A CA 3 1_555 G O HOH . A HOH 337 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.199 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DB7 _atom_sites.fract_transf_matrix[1][1] 0.015113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1 1 CA CA . C 2 CA A 1 2 2 CA CA . D 2 CA A 1 3 3 CA CA . E 3 EDO A 1 4 4 EDO EDO . F 3 EDO A 1 5 5 EDO EDO . G 4 HOH A 1 146 6 HOH HOH . G 4 HOH A 2 147 7 HOH HOH . G 4 HOH A 3 148 8 HOH HOH . G 4 HOH A 4 149 9 HOH HOH . G 4 HOH A 5 150 10 HOH HOH . G 4 HOH A 6 151 11 HOH HOH . G 4 HOH A 7 152 12 HOH HOH . G 4 HOH A 8 153 13 HOH HOH . G 4 HOH A 9 154 14 HOH HOH . G 4 HOH A 10 155 15 HOH HOH . G 4 HOH A 11 156 16 HOH HOH . G 4 HOH A 12 157 17 HOH HOH . G 4 HOH A 13 158 18 HOH HOH . G 4 HOH A 14 159 19 HOH HOH . G 4 HOH A 15 160 20 HOH HOH . G 4 HOH A 16 161 21 HOH HOH . G 4 HOH A 17 162 22 HOH HOH . G 4 HOH A 18 163 23 HOH HOH . G 4 HOH A 19 164 24 HOH HOH . G 4 HOH A 20 165 25 HOH HOH . G 4 HOH A 21 166 26 HOH HOH . G 4 HOH A 22 167 27 HOH HOH . G 4 HOH A 23 168 28 HOH HOH . G 4 HOH A 24 169 29 HOH HOH . G 4 HOH A 25 170 30 HOH HOH . G 4 HOH A 26 171 31 HOH HOH . G 4 HOH A 27 172 32 HOH HOH . G 4 HOH A 28 173 33 HOH HOH . G 4 HOH A 29 174 34 HOH HOH . G 4 HOH A 30 175 35 HOH HOH . G 4 HOH A 31 176 36 HOH HOH . G 4 HOH A 32 177 37 HOH HOH . G 4 HOH A 33 178 38 HOH HOH . G 4 HOH A 34 179 39 HOH HOH . G 4 HOH A 35 180 40 HOH HOH . G 4 HOH A 36 181 41 HOH HOH . G 4 HOH A 37 182 42 HOH HOH . G 4 HOH A 38 183 43 HOH HOH . G 4 HOH A 39 184 44 HOH HOH . G 4 HOH A 40 185 45 HOH HOH . G 4 HOH A 41 186 46 HOH HOH . G 4 HOH A 42 187 47 HOH HOH . G 4 HOH A 43 188 48 HOH HOH . G 4 HOH A 44 189 49 HOH HOH . G 4 HOH A 45 190 50 HOH HOH . G 4 HOH A 46 191 51 HOH HOH . G 4 HOH A 47 192 52 HOH HOH . G 4 HOH A 48 193 53 HOH HOH . G 4 HOH A 49 194 54 HOH HOH . G 4 HOH A 50 195 55 HOH HOH . G 4 HOH A 51 196 56 HOH HOH . G 4 HOH A 52 197 57 HOH HOH . G 4 HOH A 53 198 58 HOH HOH . G 4 HOH A 54 199 59 HOH HOH . G 4 HOH A 55 200 60 HOH HOH . G 4 HOH A 56 201 61 HOH HOH . G 4 HOH A 57 202 62 HOH HOH . G 4 HOH A 58 203 63 HOH HOH . G 4 HOH A 59 204 64 HOH HOH . G 4 HOH A 60 205 65 HOH HOH . G 4 HOH A 61 206 66 HOH HOH . G 4 HOH A 62 207 67 HOH HOH . G 4 HOH A 63 208 68 HOH HOH . G 4 HOH A 64 209 69 HOH HOH . G 4 HOH A 65 210 70 HOH HOH . G 4 HOH A 66 211 71 HOH HOH . G 4 HOH A 67 212 72 HOH HOH . G 4 HOH A 68 213 73 HOH HOH . G 4 HOH A 69 214 74 HOH HOH . G 4 HOH A 70 215 75 HOH HOH . G 4 HOH A 71 216 76 HOH HOH . G 4 HOH A 72 217 77 HOH HOH . G 4 HOH A 73 218 78 HOH HOH . G 4 HOH A 74 219 79 HOH HOH . G 4 HOH A 75 220 80 HOH HOH . G 4 HOH A 76 221 81 HOH HOH . G 4 HOH A 77 222 82 HOH HOH . G 4 HOH A 78 223 83 HOH HOH . G 4 HOH A 79 224 84 HOH HOH . G 4 HOH A 80 225 85 HOH HOH . G 4 HOH A 81 226 86 HOH HOH . G 4 HOH A 82 227 87 HOH HOH . G 4 HOH A 83 228 88 HOH HOH . G 4 HOH A 84 229 89 HOH HOH . G 4 HOH A 85 230 90 HOH HOH . G 4 HOH A 86 231 91 HOH HOH . G 4 HOH A 87 232 92 HOH HOH . G 4 HOH A 88 233 93 HOH HOH . G 4 HOH A 89 234 94 HOH HOH . G 4 HOH A 90 235 95 HOH HOH . G 4 HOH A 91 236 96 HOH HOH . G 4 HOH A 92 237 97 HOH HOH . G 4 HOH A 93 238 98 HOH HOH . G 4 HOH A 94 239 99 HOH HOH . G 4 HOH A 95 240 100 HOH HOH . G 4 HOH A 96 241 101 HOH HOH . G 4 HOH A 97 242 102 HOH HOH . G 4 HOH A 98 243 103 HOH HOH . G 4 HOH A 99 244 104 HOH HOH . G 4 HOH A 100 245 105 HOH HOH . G 4 HOH A 101 246 106 HOH HOH . G 4 HOH A 102 247 107 HOH HOH . G 4 HOH A 103 248 108 HOH HOH . G 4 HOH A 104 249 109 HOH HOH . G 4 HOH A 105 250 110 HOH HOH . G 4 HOH A 106 251 111 HOH HOH . G 4 HOH A 107 252 112 HOH HOH . G 4 HOH A 108 253 113 HOH HOH . G 4 HOH A 109 254 114 HOH HOH . G 4 HOH A 110 255 115 HOH HOH . G 4 HOH A 111 256 116 HOH HOH . G 4 HOH A 112 257 117 HOH HOH . G 4 HOH A 113 258 118 HOH HOH . G 4 HOH A 114 259 119 HOH HOH . G 4 HOH A 115 260 120 HOH HOH . G 4 HOH A 116 261 121 HOH HOH . G 4 HOH A 117 262 122 HOH HOH . G 4 HOH A 118 263 123 HOH HOH . G 4 HOH A 119 264 124 HOH HOH . G 4 HOH A 120 265 125 HOH HOH . G 4 HOH A 121 266 126 HOH HOH . G 4 HOH A 122 267 127 HOH HOH . G 4 HOH A 123 268 128 HOH HOH . G 4 HOH A 124 269 129 HOH HOH . G 4 HOH A 125 270 130 HOH HOH . G 4 HOH A 126 271 131 HOH HOH . G 4 HOH A 127 272 132 HOH HOH . G 4 HOH A 128 273 133 HOH HOH . G 4 HOH A 129 274 134 HOH HOH . G 4 HOH A 130 275 135 HOH HOH . G 4 HOH A 131 276 136 HOH HOH . G 4 HOH A 132 277 137 HOH HOH . G 4 HOH A 133 278 138 HOH HOH . G 4 HOH A 134 279 139 HOH HOH . G 4 HOH A 135 280 140 HOH HOH . G 4 HOH A 136 281 141 HOH HOH . G 4 HOH A 137 282 142 HOH HOH . G 4 HOH A 138 283 143 HOH HOH . G 4 HOH A 139 284 144 HOH HOH . G 4 HOH A 140 285 145 HOH HOH . G 4 HOH A 141 286 146 HOH HOH . G 4 HOH A 142 287 147 HOH HOH . G 4 HOH A 143 288 148 HOH HOH . G 4 HOH A 144 289 149 HOH HOH . G 4 HOH A 145 290 150 HOH HOH . G 4 HOH A 146 291 151 HOH HOH . G 4 HOH A 147 292 152 HOH HOH . G 4 HOH A 148 293 153 HOH HOH . G 4 HOH A 149 294 154 HOH HOH . G 4 HOH A 150 295 155 HOH HOH . G 4 HOH A 151 296 156 HOH HOH . G 4 HOH A 152 297 157 HOH HOH . G 4 HOH A 153 298 158 HOH HOH . G 4 HOH A 154 299 159 HOH HOH . G 4 HOH A 155 300 160 HOH HOH . G 4 HOH A 156 301 161 HOH HOH . G 4 HOH A 157 302 162 HOH HOH . G 4 HOH A 158 303 163 HOH HOH . G 4 HOH A 159 304 164 HOH HOH . G 4 HOH A 160 305 165 HOH HOH . G 4 HOH A 161 306 166 HOH HOH . G 4 HOH A 162 307 167 HOH HOH . G 4 HOH A 163 308 168 HOH HOH . G 4 HOH A 164 309 169 HOH HOH . G 4 HOH A 165 310 170 HOH HOH . G 4 HOH A 166 311 171 HOH HOH . G 4 HOH A 167 312 172 HOH HOH . G 4 HOH A 168 313 173 HOH HOH . G 4 HOH A 169 314 174 HOH HOH . G 4 HOH A 170 315 175 HOH HOH . G 4 HOH A 171 316 176 HOH HOH . G 4 HOH A 172 317 177 HOH HOH . G 4 HOH A 173 318 178 HOH HOH . G 4 HOH A 174 319 179 HOH HOH . G 4 HOH A 175 320 180 HOH HOH . G 4 HOH A 176 321 181 HOH HOH . G 4 HOH A 177 322 182 HOH HOH . G 4 HOH A 178 323 183 HOH HOH . G 4 HOH A 179 324 184 HOH HOH . G 4 HOH A 180 325 185 HOH HOH . G 4 HOH A 181 326 186 HOH HOH . G 4 HOH A 182 327 187 HOH HOH . G 4 HOH A 183 328 188 HOH HOH . G 4 HOH A 184 329 189 HOH HOH . G 4 HOH A 185 330 190 HOH HOH . G 4 HOH A 186 331 191 HOH HOH . G 4 HOH A 187 332 192 HOH HOH . G 4 HOH A 188 333 193 HOH HOH . G 4 HOH A 189 334 194 HOH HOH . G 4 HOH A 190 335 195 HOH HOH . G 4 HOH A 191 336 196 HOH HOH . G 4 HOH A 192 337 197 HOH HOH . G 4 HOH A 193 338 198 HOH HOH . G 4 HOH A 194 339 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.398 _atom_site.Cartn_y 48.379 _atom_site.Cartn_z 3.023 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 9.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #