data_3DBA # _model_server_result.job_id -cShiZrSHAEn-Jgl1niaqQ _model_server_result.datetime_utc '2024-11-08 18:11:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3DBA # _exptl.entry_id 3DBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3',5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DBA _cell.length_a 67.598 _cell.length_b 67.598 _cell.length_c 198.533 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2 A,C,D,E,F,J 2 1 B,G,H,I,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id 35G _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3',5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 35G doub 1 n n P O2P 35G sing 2 n n P O5' 35G sing 3 n n P O3' 35G sing 4 n n O2P HOP2 35G sing 5 n n O5' C5' 35G sing 6 n n C5' C4' 35G sing 7 n n C5' "H5'1" 35G sing 8 n n C5' "H5'2" 35G sing 9 n n C4' O4' 35G sing 10 n n C4' C3' 35G sing 11 n n C4' H4' 35G sing 12 n n O4' C1' 35G sing 13 n n C3' O3' 35G sing 14 n n C3' C2' 35G sing 15 n n C3' H3' 35G sing 16 n n C2' O2' 35G sing 17 n n C2' C1' 35G sing 18 n n C2' H2' 35G sing 19 n n O2' HO2' 35G sing 20 n n C1' N9 35G sing 21 n n C1' H1' 35G sing 22 n n N9 C8 35G sing 23 n y N9 C4 35G sing 24 n y C8 N7 35G doub 25 n y C8 H8 35G sing 26 n n N7 C5 35G sing 27 n y C5 C6 35G sing 28 n n C5 C4 35G doub 29 n y C6 O6 35G doub 30 n n C6 N1 35G sing 31 n n N1 C2 35G sing 32 n n N1 HN1 35G sing 33 n n C2 N2 35G sing 34 n n C2 N3 35G doub 35 n n N2 HN21 35G sing 36 n n N2 HN22 35G sing 37 n n N3 C4 35G sing 38 n n # _atom_sites.entry_id 3DBA _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0.008541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 35G A 1 1 1 35G 35G . D 3 GOL A 1 3 3 GOL GOL . E 3 GOL A 1 4 4 GOL GOL . F 3 GOL A 1 5 5 GOL GOL . G 2 35G B 1 2 2 35G 35G . H 3 GOL B 1 6 6 GOL GOL . I 3 GOL B 1 7 7 GOL GOL . J 4 HOH A 1 243 243 HOH HOH . J 4 HOH A 2 244 244 HOH HOH . J 4 HOH A 3 245 245 HOH HOH . J 4 HOH A 4 246 246 HOH HOH . J 4 HOH A 5 247 247 HOH HOH . J 4 HOH A 6 248 248 HOH HOH . J 4 HOH A 7 249 249 HOH HOH . J 4 HOH A 8 250 250 HOH HOH . J 4 HOH A 9 251 251 HOH HOH . J 4 HOH A 10 252 252 HOH HOH . J 4 HOH A 11 253 253 HOH HOH . J 4 HOH A 12 254 254 HOH HOH . J 4 HOH A 13 255 255 HOH HOH . J 4 HOH A 14 256 256 HOH HOH . J 4 HOH A 15 257 257 HOH HOH . J 4 HOH A 16 258 258 HOH HOH . J 4 HOH A 17 259 259 HOH HOH . J 4 HOH A 18 260 260 HOH HOH . J 4 HOH A 19 261 261 HOH HOH . J 4 HOH A 20 262 262 HOH HOH . J 4 HOH A 21 263 263 HOH HOH . J 4 HOH A 22 264 264 HOH HOH . J 4 HOH A 23 265 265 HOH HOH . J 4 HOH A 24 266 266 HOH HOH . J 4 HOH A 25 267 267 HOH HOH . J 4 HOH A 26 268 268 HOH HOH . J 4 HOH A 27 269 269 HOH HOH . J 4 HOH A 28 270 270 HOH HOH . J 4 HOH A 29 271 271 HOH HOH . J 4 HOH A 30 272 272 HOH HOH . J 4 HOH A 31 273 273 HOH HOH . J 4 HOH A 32 274 274 HOH HOH . J 4 HOH A 33 275 275 HOH HOH . J 4 HOH A 34 276 276 HOH HOH . J 4 HOH A 35 277 277 HOH HOH . J 4 HOH A 36 278 278 HOH HOH . J 4 HOH A 37 279 279 HOH HOH . J 4 HOH A 38 280 280 HOH HOH . J 4 HOH A 39 281 281 HOH HOH . J 4 HOH A 40 282 282 HOH HOH . J 4 HOH A 41 283 283 HOH HOH . J 4 HOH A 42 284 284 HOH HOH . J 4 HOH A 43 285 285 HOH HOH . J 4 HOH A 44 286 286 HOH HOH . J 4 HOH A 45 287 287 HOH HOH . K 4 HOH B 1 243 243 HOH HOH . K 4 HOH B 2 244 244 HOH HOH . K 4 HOH B 3 245 245 HOH HOH . K 4 HOH B 4 246 246 HOH HOH . K 4 HOH B 5 247 247 HOH HOH . K 4 HOH B 6 248 248 HOH HOH . K 4 HOH B 7 249 249 HOH HOH . K 4 HOH B 8 250 250 HOH HOH . K 4 HOH B 9 251 251 HOH HOH . K 4 HOH B 10 252 252 HOH HOH . K 4 HOH B 11 253 253 HOH HOH . K 4 HOH B 12 254 254 HOH HOH . K 4 HOH B 13 255 255 HOH HOH . K 4 HOH B 14 256 256 HOH HOH . K 4 HOH B 15 257 257 HOH HOH . K 4 HOH B 16 258 258 HOH HOH . K 4 HOH B 17 259 259 HOH HOH . K 4 HOH B 18 260 260 HOH HOH . K 4 HOH B 19 261 261 HOH HOH . K 4 HOH B 20 262 262 HOH HOH . K 4 HOH B 21 263 263 HOH HOH . K 4 HOH B 22 264 264 HOH HOH . K 4 HOH B 23 265 265 HOH HOH . K 4 HOH B 24 266 266 HOH HOH . K 4 HOH B 25 267 267 HOH HOH . K 4 HOH B 26 268 268 HOH HOH . K 4 HOH B 27 269 269 HOH HOH . K 4 HOH B 28 270 270 HOH HOH . K 4 HOH B 29 271 271 HOH HOH . K 4 HOH B 30 272 272 HOH HOH . K 4 HOH B 31 273 273 HOH HOH . K 4 HOH B 32 274 274 HOH HOH . K 4 HOH B 33 275 275 HOH HOH . K 4 HOH B 34 276 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 35G . . . C 2 17.248 35.914 26.177 1 79.21 ? P 35G 1 A 1 HETATM 2 O O1P 35G . . . C 2 18.036 36.13 27.449 1 77.99 ? O1P 35G 1 A 1 HETATM 3 O O2P 35G . . . C 2 16.759 37.076 25.34 1 81.82 ? O2P 35G 1 A 1 HETATM 4 O O5' 35G . . . C 2 15.949 35.055 26.565 1 81.45 ? O5' 35G 1 A 1 HETATM 5 C C5' 35G . . . C 2 15.196 34.416 25.536 1 82.18 ? C5' 35G 1 A 1 HETATM 6 C C4' 35G . . . C 2 16.174 33.53 24.791 1 81.07 ? C4' 35G 1 A 1 HETATM 7 O O4' 35G . . . C 2 15.677 32.836 23.659 1 79.84 ? O4' 35G 1 A 1 HETATM 8 C C3' 35G . . . C 2 17.291 34.333 24.187 1 77.74 ? C3' 35G 1 A 1 HETATM 9 O O3' 35G . . . C 2 18.047 34.91 25.228 1 78.94 ? O3' 35G 1 A 1 HETATM 10 C C2' 35G . . . C 2 17.987 33.263 23.392 1 77.84 ? C2' 35G 1 A 1 HETATM 11 O O2' 35G . . . C 2 18.946 32.604 24.228 1 75.2 ? O2' 35G 1 A 1 HETATM 12 C C1' 35G . . . C 2 16.831 32.363 22.974 1 78.96 ? C1' 35G 1 A 1 HETATM 13 N N9 35G . . . C 2 16.614 32.451 21.514 1 81.79 ? N9 35G 1 A 1 HETATM 14 C C8 35G . . . C 2 16.349 33.558 20.785 1 81.56 ? C8 35G 1 A 1 HETATM 15 N N7 35G . . . C 2 16.226 33.241 19.461 1 81.65 ? N7 35G 1 A 1 HETATM 16 C C5 35G . . . C 2 16.408 31.909 19.342 1 78.64 ? C5 35G 1 A 1 HETATM 17 C C6 35G . . . C 2 16.434 30.918 18.253 1 78.01 ? C6 35G 1 A 1 HETATM 18 O O6 35G . . . C 2 16.229 31.24 17.067 1 77.24 ? O6 35G 1 A 1 HETATM 19 N N1 35G . . . C 2 16.663 29.642 18.583 1 80.9 ? N1 35G 1 A 1 HETATM 20 C C2 35G . . . C 2 16.891 29.24 19.846 1 80.73 ? C2 35G 1 A 1 HETATM 21 N N2 35G . . . C 2 17.129 27.935 20.091 1 78.7 ? N2 35G 1 A 1 HETATM 22 N N3 35G . . . C 2 16.897 30.095 20.888 1 80.41 ? N3 35G 1 A 1 HETATM 23 C C4 35G . . . C 2 16.669 31.405 20.694 1 79.38 ? C4 35G 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #