data_3DBA # _model_server_result.job_id reBEy183vsZpB0hX6TbEUw _model_server_result.datetime_utc '2024-11-25 07:53:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3}' # _entry.id 3DBA # _exptl.entry_id 3DBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DBA _cell.length_a 67.598 _cell.length_b 67.598 _cell.length_c 198.533 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1,2 A,C,D,E,F,J 2 1 B,G,H,I,K 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 167 n n C1 C2 GOL sing 168 n n C1 H11 GOL sing 169 n n C1 H12 GOL sing 170 n n O1 HO1 GOL sing 171 n n C2 O2 GOL sing 172 n n C2 C3 GOL sing 173 n n C2 H2 GOL sing 174 n n O2 HO2 GOL sing 175 n n C3 O3 GOL sing 176 n n C3 H31 GOL sing 177 n n C3 H32 GOL sing 178 n n O3 HO3 GOL sing 179 n n # _atom_sites.entry_id 3DBA _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0.008541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 35G A 1 1 1 35G 35G . D 3 GOL A 1 3 3 GOL GOL . E 3 GOL A 1 4 4 GOL GOL . F 3 GOL A 1 5 5 GOL GOL . G 2 35G B 1 2 2 35G 35G . H 3 GOL B 1 6 6 GOL GOL . I 3 GOL B 1 7 7 GOL GOL . J 4 HOH A 1 243 243 HOH HOH . J 4 HOH A 2 244 244 HOH HOH . J 4 HOH A 3 245 245 HOH HOH . J 4 HOH A 4 246 246 HOH HOH . J 4 HOH A 5 247 247 HOH HOH . J 4 HOH A 6 248 248 HOH HOH . J 4 HOH A 7 249 249 HOH HOH . J 4 HOH A 8 250 250 HOH HOH . J 4 HOH A 9 251 251 HOH HOH . J 4 HOH A 10 252 252 HOH HOH . J 4 HOH A 11 253 253 HOH HOH . J 4 HOH A 12 254 254 HOH HOH . J 4 HOH A 13 255 255 HOH HOH . J 4 HOH A 14 256 256 HOH HOH . J 4 HOH A 15 257 257 HOH HOH . J 4 HOH A 16 258 258 HOH HOH . J 4 HOH A 17 259 259 HOH HOH . J 4 HOH A 18 260 260 HOH HOH . J 4 HOH A 19 261 261 HOH HOH . J 4 HOH A 20 262 262 HOH HOH . J 4 HOH A 21 263 263 HOH HOH . J 4 HOH A 22 264 264 HOH HOH . J 4 HOH A 23 265 265 HOH HOH . J 4 HOH A 24 266 266 HOH HOH . J 4 HOH A 25 267 267 HOH HOH . J 4 HOH A 26 268 268 HOH HOH . J 4 HOH A 27 269 269 HOH HOH . J 4 HOH A 28 270 270 HOH HOH . J 4 HOH A 29 271 271 HOH HOH . J 4 HOH A 30 272 272 HOH HOH . J 4 HOH A 31 273 273 HOH HOH . J 4 HOH A 32 274 274 HOH HOH . J 4 HOH A 33 275 275 HOH HOH . J 4 HOH A 34 276 276 HOH HOH . J 4 HOH A 35 277 277 HOH HOH . J 4 HOH A 36 278 278 HOH HOH . J 4 HOH A 37 279 279 HOH HOH . J 4 HOH A 38 280 280 HOH HOH . J 4 HOH A 39 281 281 HOH HOH . J 4 HOH A 40 282 282 HOH HOH . J 4 HOH A 41 283 283 HOH HOH . J 4 HOH A 42 284 284 HOH HOH . J 4 HOH A 43 285 285 HOH HOH . J 4 HOH A 44 286 286 HOH HOH . J 4 HOH A 45 287 287 HOH HOH . K 4 HOH B 1 243 243 HOH HOH . K 4 HOH B 2 244 244 HOH HOH . K 4 HOH B 3 245 245 HOH HOH . K 4 HOH B 4 246 246 HOH HOH . K 4 HOH B 5 247 247 HOH HOH . K 4 HOH B 6 248 248 HOH HOH . K 4 HOH B 7 249 249 HOH HOH . K 4 HOH B 8 250 250 HOH HOH . K 4 HOH B 9 251 251 HOH HOH . K 4 HOH B 10 252 252 HOH HOH . K 4 HOH B 11 253 253 HOH HOH . K 4 HOH B 12 254 254 HOH HOH . K 4 HOH B 13 255 255 HOH HOH . K 4 HOH B 14 256 256 HOH HOH . K 4 HOH B 15 257 257 HOH HOH . K 4 HOH B 16 258 258 HOH HOH . K 4 HOH B 17 259 259 HOH HOH . K 4 HOH B 18 260 260 HOH HOH . K 4 HOH B 19 261 261 HOH HOH . K 4 HOH B 20 262 262 HOH HOH . K 4 HOH B 21 263 263 HOH HOH . K 4 HOH B 22 264 264 HOH HOH . K 4 HOH B 23 265 265 HOH HOH . K 4 HOH B 24 266 266 HOH HOH . K 4 HOH B 25 267 267 HOH HOH . K 4 HOH B 26 268 268 HOH HOH . K 4 HOH B 27 269 269 HOH HOH . K 4 HOH B 28 270 270 HOH HOH . K 4 HOH B 29 271 271 HOH HOH . K 4 HOH B 30 272 272 HOH HOH . K 4 HOH B 31 273 273 HOH HOH . K 4 HOH B 32 274 274 HOH HOH . K 4 HOH B 33 275 275 HOH HOH . K 4 HOH B 34 276 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 9.569 31.656 32.869 1 116.23 ? C1 GOL 3 A 1 HETATM 2 O O1 GOL . . . D 3 10.928 31.671 32.488 1 114.92 ? O1 GOL 3 A 1 HETATM 3 C C2 GOL . . . D 3 8.73 30.985 31.785 1 117.28 ? C2 GOL 3 A 1 HETATM 4 O O2 GOL . . . D 3 8.961 31.626 30.556 1 115.07 ? O2 GOL 3 A 1 HETATM 5 C C3 GOL . . . D 3 9.079 29.504 31.647 1 118.94 ? C3 GOL 3 A 1 HETATM 6 O O3 GOL . . . D 3 8.069 28.7 32.221 1 119.81 ? O3 GOL 3 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #