data_3DBM # _model_server_result.job_id LcOppWoIms4X1kmh4suPuw _model_server_result.datetime_utc '2025-09-09 22:35:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3DBM # _exptl.entry_id 3DBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.445 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9E,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DBM _cell.length_a 128.3 _cell.length_b 128.3 _cell.length_c 160 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 426 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 426 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.582 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H32 O3' _chem_comp.formula_weight 296.445 _chem_comp.id HO2 _chem_comp.mon_nstd_flag . _chem_comp.name '(9E,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 HO2 sing 232 n n C18 H18 HO2 sing 233 n n C18 H18A HO2 sing 234 n n C18 H18B HO2 sing 235 n n C17 C16 HO2 sing 236 n n C17 H17 HO2 sing 237 n n C17 H17A HO2 sing 238 n n C15 C16 HO2 sing 239 n n C16 H16 HO2 sing 240 n n C16 H16A HO2 sing 241 n n C15 C14 HO2 sing 242 n n C15 H15 HO2 sing 243 n n C15 H15A HO2 sing 244 n n C13 C14 HO2 sing 245 n n C14 H14 HO2 sing 246 n n C14 H14A HO2 sing 247 n n C12 C13 HO2 sing 248 n n C13 O21 HO2 sing 249 n n C13 H13 HO2 sing 250 n n O21 HO21 HO2 sing 251 n n C11 C12 HO2 doub 252 n n C12 H12 HO2 sing 253 e n C10 C11 HO2 sing 254 n n C11 H11 HO2 sing 255 n n C09 C10 HO2 doub 256 n n C10 H10 HO2 sing 257 e n C08 C09 HO2 sing 258 n n C09 H09 HO2 sing 259 n n C07 C08 HO2 sing 260 n n C08 H08 HO2 sing 261 n n C08 H08A HO2 sing 262 n n C06 C07 HO2 sing 263 n n C07 H07 HO2 sing 264 n n C07 H07A HO2 sing 265 n n C05 C06 HO2 sing 266 n n C06 H06 HO2 sing 267 n n C06 H06A HO2 sing 268 n n C04 C05 HO2 sing 269 n n C05 H05 HO2 sing 270 n n C05 H05A HO2 sing 271 n n C03 C04 HO2 sing 272 n n C04 H04 HO2 sing 273 n n C04 H04A HO2 sing 274 n n C02 C03 HO2 sing 275 n n C03 H03 HO2 sing 276 n n C03 H03A HO2 sing 277 n n C01 C02 HO2 sing 278 n n C02 H02 HO2 sing 279 n n C02 H02A HO2 sing 280 n n O20 C01 HO2 doub 281 n n C01 O19 HO2 sing 282 n n O19 HO19 HO2 sing 283 n n # _atom_sites.entry_id 3DBM _atom_sites.fract_transf_matrix[1][1] 0.007794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 600 600 HEM HEM . C 3 HO2 A 1 601 601 HO2 HO2 . D 4 HOH A 1 602 1 HOH WAT . D 4 HOH A 2 603 2 HOH WAT . D 4 HOH A 3 604 3 HOH WAT . D 4 HOH A 4 605 4 HOH WAT . D 4 HOH A 5 606 5 HOH WAT . D 4 HOH A 6 607 6 HOH WAT . D 4 HOH A 7 608 7 HOH WAT . D 4 HOH A 8 609 8 HOH WAT . D 4 HOH A 9 610 9 HOH WAT . D 4 HOH A 10 611 10 HOH WAT . D 4 HOH A 11 612 11 HOH WAT . D 4 HOH A 12 613 12 HOH WAT . D 4 HOH A 13 614 13 HOH WAT . D 4 HOH A 14 615 14 HOH WAT . D 4 HOH A 15 616 15 HOH WAT . D 4 HOH A 16 617 16 HOH WAT . D 4 HOH A 17 618 17 HOH WAT . D 4 HOH A 18 619 18 HOH WAT . D 4 HOH A 19 620 19 HOH WAT . D 4 HOH A 20 621 20 HOH WAT . D 4 HOH A 21 622 21 HOH WAT . D 4 HOH A 22 623 22 HOH WAT . D 4 HOH A 23 624 23 HOH WAT . D 4 HOH A 24 625 24 HOH WAT . D 4 HOH A 25 626 25 HOH WAT . D 4 HOH A 26 627 26 HOH WAT . D 4 HOH A 27 628 27 HOH WAT . D 4 HOH A 28 629 28 HOH WAT . D 4 HOH A 29 630 29 HOH WAT . D 4 HOH A 30 631 30 HOH WAT . D 4 HOH A 31 632 31 HOH WAT . D 4 HOH A 32 633 32 HOH WAT . D 4 HOH A 33 634 33 HOH WAT . D 4 HOH A 34 635 34 HOH WAT . D 4 HOH A 35 636 35 HOH WAT . D 4 HOH A 36 637 36 HOH WAT . D 4 HOH A 37 638 37 HOH WAT . D 4 HOH A 38 639 38 HOH WAT . D 4 HOH A 39 640 39 HOH WAT . D 4 HOH A 40 641 40 HOH WAT . D 4 HOH A 41 642 41 HOH WAT . D 4 HOH A 42 643 42 HOH WAT . D 4 HOH A 43 644 43 HOH WAT . D 4 HOH A 44 645 44 HOH WAT . D 4 HOH A 45 646 45 HOH WAT . D 4 HOH A 46 647 46 HOH WAT . D 4 HOH A 47 648 47 HOH WAT . D 4 HOH A 48 649 48 HOH WAT . D 4 HOH A 49 650 49 HOH WAT . D 4 HOH A 50 651 50 HOH WAT . D 4 HOH A 51 652 51 HOH WAT . D 4 HOH A 52 653 52 HOH WAT . D 4 HOH A 53 654 53 HOH WAT . D 4 HOH A 54 655 54 HOH WAT . D 4 HOH A 55 656 55 HOH WAT . D 4 HOH A 56 657 56 HOH WAT . D 4 HOH A 57 658 57 HOH WAT . D 4 HOH A 58 659 58 HOH WAT . D 4 HOH A 59 660 59 HOH WAT . D 4 HOH A 60 661 60 HOH WAT . D 4 HOH A 61 662 61 HOH WAT . D 4 HOH A 62 663 62 HOH WAT . D 4 HOH A 63 664 63 HOH WAT . D 4 HOH A 64 665 64 HOH WAT . D 4 HOH A 65 666 65 HOH WAT . D 4 HOH A 66 667 66 HOH WAT . D 4 HOH A 67 668 67 HOH WAT . D 4 HOH A 68 669 68 HOH WAT . D 4 HOH A 69 670 69 HOH WAT . D 4 HOH A 70 671 70 HOH WAT . D 4 HOH A 71 672 71 HOH WAT . D 4 HOH A 72 673 72 HOH WAT . D 4 HOH A 73 674 73 HOH WAT . D 4 HOH A 74 675 74 HOH WAT . D 4 HOH A 75 676 75 HOH WAT . D 4 HOH A 76 677 76 HOH WAT . D 4 HOH A 77 678 77 HOH WAT . D 4 HOH A 78 679 78 HOH WAT . D 4 HOH A 79 680 79 HOH WAT . D 4 HOH A 80 681 80 HOH WAT . D 4 HOH A 81 682 81 HOH WAT . D 4 HOH A 82 683 82 HOH WAT . D 4 HOH A 83 684 83 HOH WAT . D 4 HOH A 84 685 84 HOH WAT . D 4 HOH A 85 686 85 HOH WAT . D 4 HOH A 86 687 86 HOH WAT . D 4 HOH A 87 688 87 HOH WAT . D 4 HOH A 88 689 88 HOH WAT . D 4 HOH A 89 690 89 HOH WAT . D 4 HOH A 90 691 90 HOH WAT . D 4 HOH A 91 692 91 HOH WAT . D 4 HOH A 92 693 92 HOH WAT . D 4 HOH A 93 694 93 HOH WAT . D 4 HOH A 94 695 94 HOH WAT . D 4 HOH A 95 696 95 HOH WAT . D 4 HOH A 96 697 96 HOH WAT . D 4 HOH A 97 698 97 HOH WAT . D 4 HOH A 98 699 98 HOH WAT . D 4 HOH A 99 700 99 HOH WAT . D 4 HOH A 100 701 100 HOH WAT . D 4 HOH A 101 702 101 HOH WAT . D 4 HOH A 102 703 102 HOH WAT . D 4 HOH A 103 704 103 HOH WAT . D 4 HOH A 104 705 104 HOH WAT . D 4 HOH A 105 706 105 HOH WAT . D 4 HOH A 106 707 106 HOH WAT . D 4 HOH A 107 708 107 HOH WAT . D 4 HOH A 108 709 108 HOH WAT . D 4 HOH A 109 710 109 HOH WAT . D 4 HOH A 110 711 110 HOH WAT . D 4 HOH A 111 712 111 HOH WAT . D 4 HOH A 112 713 112 HOH WAT . D 4 HOH A 113 714 113 HOH WAT . D 4 HOH A 114 715 114 HOH WAT . D 4 HOH A 115 716 115 HOH WAT . D 4 HOH A 116 717 116 HOH WAT . D 4 HOH A 117 718 117 HOH WAT . D 4 HOH A 118 719 118 HOH WAT . D 4 HOH A 119 720 119 HOH WAT . D 4 HOH A 120 721 120 HOH WAT . D 4 HOH A 121 722 121 HOH WAT . D 4 HOH A 122 723 122 HOH WAT . D 4 HOH A 123 724 123 HOH WAT . D 4 HOH A 124 725 124 HOH WAT . D 4 HOH A 125 726 125 HOH WAT . D 4 HOH A 126 727 126 HOH WAT . D 4 HOH A 127 728 127 HOH WAT . D 4 HOH A 128 729 128 HOH WAT . D 4 HOH A 129 730 129 HOH WAT . D 4 HOH A 130 731 130 HOH WAT . D 4 HOH A 131 732 131 HOH WAT . D 4 HOH A 132 733 132 HOH WAT . D 4 HOH A 133 734 133 HOH WAT . D 4 HOH A 134 735 134 HOH WAT . D 4 HOH A 135 736 135 HOH WAT . D 4 HOH A 136 737 136 HOH WAT . D 4 HOH A 137 738 137 HOH WAT . D 4 HOH A 138 739 138 HOH WAT . D 4 HOH A 139 740 139 HOH WAT . D 4 HOH A 140 741 140 HOH WAT . D 4 HOH A 141 742 141 HOH WAT . D 4 HOH A 142 743 142 HOH WAT . D 4 HOH A 143 744 143 HOH WAT . D 4 HOH A 144 745 144 HOH WAT . D 4 HOH A 145 746 145 HOH WAT . D 4 HOH A 146 747 146 HOH WAT . D 4 HOH A 147 748 147 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 HO2 . . . C 3 50.016 36.683 17.938 1 30.73 ? C18 HO2 601 A 1 HETATM 2 C C17 HO2 . . . C 3 48.539 36.988 17.68 1 29.39 ? C17 HO2 601 A 1 HETATM 3 C C16 HO2 . . . C 3 47.628 36.116 18.548 1 27.7 ? C16 HO2 601 A 1 HETATM 4 C C15 HO2 . . . C 3 46.157 36.32 18.177 1 27.05 ? C15 HO2 601 A 1 HETATM 5 C C14 HO2 . . . C 3 45.249 35.355 18.946 1 26.33 ? C14 HO2 601 A 1 HETATM 6 C C13 HO2 . . . C 3 43.809 35.417 18.43 1 26.32 ? C13 HO2 601 A 1 HETATM 7 O O21 HO2 . . . C 3 42.993 34.46 19.112 1 26.13 ? O21 HO2 601 A 1 HETATM 8 C C12 HO2 . . . C 3 43.799 35.11 16.932 1 23.73 ? C12 HO2 601 A 1 HETATM 9 C C11 HO2 . . . C 3 42.621 35.242 16.207 1 23.7 ? C11 HO2 601 A 1 HETATM 10 C C10 HO2 . . . C 3 42.616 34.97 14.844 1 25.61 ? C10 HO2 601 A 1 HETATM 11 C C09 HO2 . . . C 3 43.785 34.566 14.208 1 23.41 ? C09 HO2 601 A 1 HETATM 12 C C08 HO2 . . . C 3 43.787 34.303 12.843 1 23.81 ? C08 HO2 601 A 1 HETATM 13 C C07 HO2 . . . C 3 43.594 35.596 12.046 1 22.16 ? C07 HO2 601 A 1 HETATM 14 C C06 HO2 . . . C 3 43.929 35.393 10.567 1 18.46 ? C06 HO2 601 A 1 HETATM 15 C C05 HO2 . . . C 3 45.374 34.908 10.424 1 20.33 ? C05 HO2 601 A 1 HETATM 16 C C04 HO2 . . . C 3 45.808 34.745 8.965 1 21.15 ? C04 HO2 601 A 1 HETATM 17 C C03 HO2 . . . C 3 45.969 36.089 8.25 1 22.79 ? C03 HO2 601 A 1 HETATM 18 C C02 HO2 . . . C 3 44.63 36.809 8.081 1 26.32 ? C02 HO2 601 A 1 HETATM 19 C C01 HO2 . . . C 3 43.637 35.918 7.332 1 29.74 ? C01 HO2 601 A 1 HETATM 20 O O20 HO2 . . . C 3 43.644 35.974 6.083 1 28.75 ? O20 HO2 601 A 1 HETATM 21 O O19 HO2 . . . C 3 42.9 35.192 8.036 1 31.6 ? O19 HO2 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #