data_3DBX
#
_model_server_result.job_id            nZZCib2neIXaQ8e5bq_u-g 
_model_server_result.datetime_utc      '2025-07-06 17:55:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dbx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":522}' 
#
_entry.id    3DBX 
#
_exptl.entry_id    3DBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DBX 
_cell.length_a            92.154 
_cell.length_b            92.154 
_cell.length_c            96.693 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 209 A CYS 209 1_555 A SG CYS 267 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
disulf ? disulf2 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 C C1 NAG . A NAG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale2 A ND2 ASN 51 A ASN 51 1_555 D C1 NAG . A NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale3 A ND2 ASN 110 A ASN 110 1_555 E C1 NAG . A NAG 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 290 n n 
C1 O2 PLM doub 291 n n 
C1 C2 PLM sing 292 n n 
O1 H PLM sing 293 n n 
C2 C3 PLM sing 294 n n 
C2 H21 PLM sing 295 n n 
C2 H22 PLM sing 296 n n 
C3 C4 PLM sing 297 n n 
C3 H31 PLM sing 298 n n 
C3 H32 PLM sing 299 n n 
C4 C5 PLM sing 300 n n 
C4 H41 PLM sing 301 n n 
C4 H42 PLM sing 302 n n 
C5 C6 PLM sing 303 n n 
C5 H51 PLM sing 304 n n 
C5 H52 PLM sing 305 n n 
C6 C7 PLM sing 306 n n 
C6 H61 PLM sing 307 n n 
C6 H62 PLM sing 308 n n 
C7 C8 PLM sing 309 n n 
C7 H71 PLM sing 310 n n 
C7 H72 PLM sing 311 n n 
C8 C9 PLM sing 312 n n 
C8 H81 PLM sing 313 n n 
C8 H82 PLM sing 314 n n 
C9 CA PLM sing 315 n n 
C9 H91 PLM sing 316 n n 
C9 H92 PLM sing 317 n n 
CA CB PLM sing 318 n n 
CA HA1 PLM sing 319 n n 
CA HA2 PLM sing 320 n n 
CB CC PLM sing 321 n n 
CB HB1 PLM sing 322 n n 
CB HB2 PLM sing 323 n n 
CC CD PLM sing 324 n n 
CC HC1 PLM sing 325 n n 
CC HC2 PLM sing 326 n n 
CD CE PLM sing 327 n n 
CD HD1 PLM sing 328 n n 
CD HD2 PLM sing 329 n n 
CE CF PLM sing 330 n n 
CE HE1 PLM sing 331 n n 
CE HE2 PLM sing 332 n n 
CF CG PLM sing 333 n n 
CF HF1 PLM sing 334 n n 
CF HF2 PLM sing 335 n n 
CG HG1 PLM sing 336 n n 
CG HG2 PLM sing 337 n n 
CG HG3 PLM sing 338 n n 
#
_atom_sites.entry_id                     3DBX 
_atom_sites.fract_transf_matrix[1][1]    0.010851 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010851 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 500 500 NAG NAG . 
D 3 NAG A 1 511 511 NAG NAG . 
E 3 NAG A 1 521 521 NAG NAG . 
F 4 PLM A 1 522 1 PLM PLM . 
G 5 HOH A 1 523 2 HOH HOH . 
G 5 HOH A 2 524 5 HOH HOH . 
G 5 HOH A 3 525 8 HOH HOH . 
G 5 HOH A 4 526 12 HOH HOH . 
G 5 HOH A 5 527 14 HOH HOH . 
G 5 HOH A 6 528 17 HOH HOH . 
G 5 HOH A 7 529 23 HOH HOH . 
G 5 HOH A 8 530 24 HOH HOH . 
G 5 HOH A 9 531 25 HOH HOH . 
G 5 HOH A 10 532 29 HOH HOH . 
G 5 HOH A 11 533 30 HOH HOH . 
G 5 HOH A 12 534 31 HOH HOH . 
G 5 HOH A 13 535 32 HOH HOH . 
G 5 HOH A 14 536 33 HOH HOH . 
G 5 HOH A 15 537 34 HOH HOH . 
G 5 HOH A 16 538 36 HOH HOH . 
G 5 HOH A 17 539 41 HOH HOH . 
G 5 HOH A 18 540 43 HOH HOH . 
G 5 HOH A 19 541 45 HOH HOH . 
G 5 HOH A 20 542 47 HOH HOH . 
G 5 HOH A 21 543 49 HOH HOH . 
G 5 HOH A 22 544 51 HOH HOH . 
G 5 HOH A 23 545 53 HOH HOH . 
G 5 HOH A 24 546 57 HOH HOH . 
G 5 HOH A 25 547 62 HOH HOH . 
G 5 HOH A 26 548 66 HOH HOH . 
G 5 HOH A 27 549 77 HOH HOH . 
G 5 HOH A 28 550 78 HOH HOH . 
G 5 HOH A 29 551 83 HOH HOH . 
G 5 HOH A 30 552 84 HOH HOH . 
G 5 HOH A 31 553 94 HOH HOH . 
G 5 HOH A 32 554 97 HOH HOH . 
G 5 HOH A 33 555 99 HOH HOH . 
G 5 HOH A 34 556 100 HOH HOH . 
G 5 HOH A 35 557 104 HOH HOH . 
G 5 HOH A 36 558 111 HOH HOH . 
G 5 HOH A 37 559 112 HOH HOH . 
G 5 HOH A 38 560 113 HOH HOH . 
G 5 HOH A 39 561 114 HOH HOH . 
G 5 HOH A 40 562 115 HOH HOH . 
G 5 HOH A 41 563 123 HOH HOH . 
G 5 HOH A 42 564 124 HOH HOH . 
G 5 HOH A 43 565 126 HOH HOH . 
G 5 HOH A 44 566 127 HOH HOH . 
G 5 HOH A 45 567 129 HOH HOH . 
G 5 HOH A 46 568 132 HOH HOH . 
G 5 HOH A 47 569 134 HOH HOH . 
G 5 HOH A 48 570 140 HOH HOH . 
G 5 HOH A 49 571 147 HOH HOH . 
G 5 HOH A 50 572 148 HOH HOH . 
G 5 HOH A 51 573 157 HOH HOH . 
G 5 HOH A 52 574 158 HOH HOH . 
G 5 HOH A 53 575 160 HOH HOH . 
G 5 HOH A 54 576 167 HOH HOH . 
G 5 HOH A 55 577 175 HOH HOH . 
G 5 HOH A 56 578 176 HOH HOH . 
G 5 HOH A 57 579 177 HOH HOH . 
G 5 HOH A 58 580 185 HOH HOH . 
G 5 HOH A 59 581 193 HOH HOH . 
G 5 HOH A 60 582 196 HOH HOH . 
G 5 HOH A 61 583 199 HOH HOH . 
G 5 HOH A 62 584 200 HOH HOH . 
G 5 HOH A 63 585 201 HOH HOH . 
G 5 HOH A 64 586 203 HOH HOH . 
G 5 HOH A 65 587 222 HOH HOH . 
G 5 HOH A 66 588 223 HOH HOH . 
G 5 HOH A 67 589 225 HOH HOH . 
G 5 HOH A 68 590 229 HOH HOH . 
G 5 HOH A 69 591 235 HOH HOH . 
G 5 HOH A 70 592 236 HOH HOH . 
G 5 HOH A 71 593 239 HOH HOH . 
G 5 HOH A 72 594 244 HOH HOH . 
G 5 HOH A 73 595 250 HOH HOH . 
G 5 HOH A 74 596 253 HOH HOH . 
G 5 HOH A 75 597 268 HOH HOH . 
G 5 HOH A 76 598 288 HOH HOH . 
G 5 HOH A 77 599 289 HOH HOH . 
G 5 HOH A 78 600 294 HOH HOH . 
G 5 HOH A 79 601 299 HOH HOH . 
G 5 HOH A 80 602 302 HOH HOH . 
H 5 HOH B 1 100 1 HOH HOH . 
H 5 HOH B 2 101 4 HOH HOH . 
H 5 HOH B 3 102 6 HOH HOH . 
H 5 HOH B 4 103 7 HOH HOH . 
H 5 HOH B 5 104 9 HOH HOH . 
H 5 HOH B 6 105 10 HOH HOH . 
H 5 HOH B 7 106 13 HOH HOH . 
H 5 HOH B 8 107 15 HOH HOH . 
H 5 HOH B 9 108 18 HOH HOH . 
H 5 HOH B 10 109 19 HOH HOH . 
H 5 HOH B 11 110 21 HOH HOH . 
H 5 HOH B 12 111 27 HOH HOH . 
H 5 HOH B 13 112 37 HOH HOH . 
H 5 HOH B 14 113 38 HOH HOH . 
H 5 HOH B 15 114 39 HOH HOH . 
H 5 HOH B 16 115 40 HOH HOH . 
H 5 HOH B 17 116 46 HOH HOH . 
H 5 HOH B 18 117 50 HOH HOH . 
H 5 HOH B 19 118 52 HOH HOH . 
H 5 HOH B 20 119 60 HOH HOH . 
H 5 HOH B 21 120 63 HOH HOH . 
H 5 HOH B 22 121 65 HOH HOH . 
H 5 HOH B 23 122 67 HOH HOH . 
H 5 HOH B 24 123 73 HOH HOH . 
H 5 HOH B 25 124 74 HOH HOH . 
H 5 HOH B 26 125 79 HOH HOH . 
H 5 HOH B 27 126 85 HOH HOH . 
H 5 HOH B 28 127 86 HOH HOH . 
H 5 HOH B 29 128 90 HOH HOH . 
H 5 HOH B 30 129 92 HOH HOH . 
H 5 HOH B 31 130 93 HOH HOH . 
H 5 HOH B 32 131 95 HOH HOH . 
H 5 HOH B 33 132 102 HOH HOH . 
H 5 HOH B 34 133 103 HOH HOH . 
H 5 HOH B 35 134 116 HOH HOH . 
H 5 HOH B 36 135 118 HOH HOH . 
H 5 HOH B 37 136 119 HOH HOH . 
H 5 HOH B 38 137 120 HOH HOH . 
H 5 HOH B 39 138 122 HOH HOH . 
H 5 HOH B 40 139 125 HOH HOH . 
H 5 HOH B 41 140 128 HOH HOH . 
H 5 HOH B 42 141 130 HOH HOH . 
H 5 HOH B 43 142 131 HOH HOH . 
H 5 HOH B 44 143 136 HOH HOH . 
H 5 HOH B 45 144 137 HOH HOH . 
H 5 HOH B 46 145 138 HOH HOH . 
H 5 HOH B 47 146 139 HOH HOH . 
H 5 HOH B 48 147 141 HOH HOH . 
H 5 HOH B 49 148 151 HOH HOH . 
H 5 HOH B 50 149 156 HOH HOH . 
H 5 HOH B 51 150 161 HOH HOH . 
H 5 HOH B 52 151 168 HOH HOH . 
H 5 HOH B 53 152 171 HOH HOH . 
H 5 HOH B 54 153 172 HOH HOH . 
H 5 HOH B 55 154 173 HOH HOH . 
H 5 HOH B 56 155 179 HOH HOH . 
H 5 HOH B 57 156 187 HOH HOH . 
H 5 HOH B 58 157 188 HOH HOH . 
H 5 HOH B 59 158 198 HOH HOH . 
H 5 HOH B 60 159 209 HOH HOH . 
H 5 HOH B 61 160 212 HOH HOH . 
H 5 HOH B 62 161 213 HOH HOH . 
H 5 HOH B 63 162 231 HOH HOH . 
H 5 HOH B 64 163 232 HOH HOH . 
H 5 HOH B 65 164 242 HOH HOH . 
H 5 HOH B 66 165 256 HOH HOH . 
H 5 HOH B 67 166 271 HOH HOH . 
H 5 HOH B 68 167 272 HOH HOH . 
H 5 HOH B 69 168 300 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . F 4 16.328 66.355 22.677 1 68.45 ? C1 PLM 522 A 1 
HETATM 2 O O1 PLM . . . F 4 17.556 66.519 22.893 1 69.12 ? O1 PLM 522 A 1 
HETATM 3 O O2 PLM . . . F 4 15.58 67.359 22.712 1 68.55 ? O2 PLM 522 A 1 
HETATM 4 C C2 PLM . . . F 4 15.746 64.984 22.379 1 68.29 ? C2 PLM 522 A 1 
HETATM 5 C C3 PLM . . . F 4 16.643 63.87 22.925 1 68.56 ? C3 PLM 522 A 1 
HETATM 6 C C4 PLM . . . F 4 15.993 62.493 22.808 1 68.16 ? C4 PLM 522 A 1 
HETATM 7 C C5 PLM . . . F 4 15.198 62.117 24.061 1 68.15 ? C5 PLM 522 A 1 
HETATM 8 C C6 PLM . . . F 4 16.053 61.493 25.167 1 67.41 ? C6 PLM 522 A 1 
HETATM 9 C C7 PLM . . . F 4 15.553 61.871 26.56 1 66.76 ? C7 PLM 522 A 1 
HETATM 10 C C8 PLM . . . F 4 14.832 60.717 27.234 1 65.86 ? C8 PLM 522 A 1 
HETATM 11 C C9 PLM . . . F 4 15.123 60.688 28.732 1 65.75 ? C9 PLM 522 A 1 
HETATM 12 C CA PLM . . . F 4 14.451 59.464 29.346 1 65.12 ? CA PLM 522 A 1 
HETATM 13 C CB PLM . . . F 4 15.297 58.814 30.433 1 64.64 ? CB PLM 522 A 1 
HETATM 14 C CC PLM . . . F 4 16.141 57.659 29.906 1 63.52 ? CC PLM 522 A 1 
HETATM 15 C CD PLM . . . F 4 15.468 56.31 30.121 1 63.09 ? CD PLM 522 A 1 
HETATM 16 C CE PLM . . . F 4 16.099 55.294 29.193 1 63.06 ? CE PLM 522 A 1 
HETATM 17 C CF PLM . . . F 4 16.483 54.019 29.933 1 63.32 ? CF PLM 522 A 1 
HETATM 18 C CG PLM . . . F 4 17.737 53.402 29.324 1 62.3 ? CG PLM 522 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#