data_3DC2 # _model_server_result.job_id U1kXNNyJLUdQh7mbHkP5QA _model_server_result.datetime_utc '2024-10-19 08:32:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 3DC2 # _exptl.entry_id 3DC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DC2 _cell.length_a 165.192 _cell.length_b 165.192 _cell.length_c 218.894 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 82.596 143.060469 36.482333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 401 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 401 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 7_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.248 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 277 n n N H SER sing 278 n n N H2 SER sing 279 n n CA C SER sing 280 n n CA CB SER sing 281 n n CA HA SER sing 282 n n C O SER doub 283 n n C OXT SER sing 284 n n CB OG SER sing 285 n n CB HB2 SER sing 286 n n CB HB3 SER sing 287 n n OG HG SER sing 288 n n OXT HXT SER sing 289 n n # _atom_sites.entry_id 3DC2 _atom_sites.fract_transf_matrix[1][1] 0.006054 _atom_sites.fract_transf_matrix[1][2] 0.003495 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SER A 1 600 600 SER SER . D 3 TLA A 1 700 700 TLA TLA . E 2 SER B 1 600 600 SER SER . F 3 TLA B 1 700 700 TLA TLA . G 3 TLA B 1 701 701 TLA TLA . H 4 HOH A 1 800 800 HOH HOH . H 4 HOH A 2 801 801 HOH HOH . H 4 HOH A 3 802 802 HOH HOH . H 4 HOH A 4 803 803 HOH HOH . H 4 HOH A 5 804 804 HOH HOH . H 4 HOH A 6 805 805 HOH HOH . H 4 HOH A 7 806 806 HOH HOH . H 4 HOH A 8 807 807 HOH HOH . H 4 HOH A 9 808 808 HOH HOH . H 4 HOH A 10 809 809 HOH HOH . H 4 HOH A 11 810 810 HOH HOH . H 4 HOH A 12 811 811 HOH HOH . H 4 HOH A 13 812 812 HOH HOH . H 4 HOH A 14 813 813 HOH HOH . H 4 HOH A 15 814 814 HOH HOH . H 4 HOH A 16 815 815 HOH HOH . H 4 HOH A 17 816 816 HOH HOH . H 4 HOH A 18 817 817 HOH HOH . H 4 HOH A 19 818 818 HOH HOH . H 4 HOH A 20 819 819 HOH HOH . H 4 HOH A 21 820 820 HOH HOH . H 4 HOH A 22 821 821 HOH HOH . H 4 HOH A 23 822 822 HOH HOH . H 4 HOH A 24 823 823 HOH HOH . H 4 HOH A 25 824 824 HOH HOH . H 4 HOH A 26 825 825 HOH HOH . H 4 HOH A 27 826 826 HOH HOH . H 4 HOH A 28 827 827 HOH HOH . H 4 HOH A 29 828 828 HOH HOH . H 4 HOH A 30 829 829 HOH HOH . H 4 HOH A 31 830 830 HOH HOH . H 4 HOH A 32 831 831 HOH HOH . H 4 HOH A 33 832 832 HOH HOH . H 4 HOH A 34 833 833 HOH HOH . H 4 HOH A 35 834 834 HOH HOH . H 4 HOH A 36 835 835 HOH HOH . H 4 HOH A 37 836 836 HOH HOH . H 4 HOH A 38 837 837 HOH HOH . H 4 HOH A 39 838 838 HOH HOH . H 4 HOH A 40 839 839 HOH HOH . I 4 HOH B 1 800 800 HOH HOH . I 4 HOH B 2 801 801 HOH HOH . I 4 HOH B 3 802 802 HOH HOH . I 4 HOH B 4 803 803 HOH HOH . I 4 HOH B 5 804 804 HOH HOH . I 4 HOH B 6 805 805 HOH HOH . I 4 HOH B 7 806 806 HOH HOH . I 4 HOH B 8 807 807 HOH HOH . I 4 HOH B 9 808 808 HOH HOH . I 4 HOH B 10 809 809 HOH HOH . I 4 HOH B 11 810 810 HOH HOH . I 4 HOH B 12 811 811 HOH HOH . I 4 HOH B 13 812 812 HOH HOH . I 4 HOH B 14 813 813 HOH HOH . I 4 HOH B 15 814 814 HOH HOH . I 4 HOH B 16 815 815 HOH HOH . I 4 HOH B 17 816 816 HOH HOH . I 4 HOH B 18 817 817 HOH HOH . I 4 HOH B 19 818 818 HOH HOH . I 4 HOH B 20 819 819 HOH HOH . I 4 HOH B 21 820 820 HOH HOH . I 4 HOH B 22 821 821 HOH HOH . I 4 HOH B 23 822 822 HOH HOH . I 4 HOH B 24 823 823 HOH HOH . I 4 HOH B 25 824 824 HOH HOH . I 4 HOH B 26 825 825 HOH HOH . I 4 HOH B 27 826 826 HOH HOH . I 4 HOH B 28 827 827 HOH HOH . I 4 HOH B 29 828 828 HOH HOH . I 4 HOH B 30 829 829 HOH HOH . I 4 HOH B 31 830 830 HOH HOH . I 4 HOH B 32 831 831 HOH HOH . I 4 HOH B 33 832 832 HOH HOH . I 4 HOH B 34 833 833 HOH HOH . I 4 HOH B 35 834 834 HOH HOH . I 4 HOH B 36 835 835 HOH HOH . I 4 HOH B 37 836 836 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . C 2 11.056 80.857 47.221 1 83.24 ? N SER 600 A 1 HETATM 2 C CA SER . . . C 2 11.676 79.491 47.182 1 84.85 ? CA SER 600 A 1 HETATM 3 C C SER . . . C 2 12.368 79.134 45.842 1 84.39 ? C SER 600 A 1 HETATM 4 O O SER . . . C 2 13.262 78.279 45.805 1 80.78 ? O SER 600 A 1 HETATM 5 C CB SER . . . C 2 10.634 78.43 47.549 1 80.18 ? CB SER 600 A 1 HETATM 6 O OG SER . . . C 2 9.801 78.158 46.444 1 80.44 ? OG SER 600 A 1 HETATM 7 O OXT SER . . . C 2 12.054 79.668 44.766 1 85.82 ? OXT SER 600 A 1 # _model_server_stats.io_time_ms 108 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #