data_3DCJ # _model_server_result.job_id RPK5X9iAwWMRlzahZwDcMg _model_server_result.datetime_utc '2024-11-01 17:35:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dcj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 3DCJ # _exptl.entry_id 3DCJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.31 _cell.angle_gamma 90 _cell.entry_id 3DCJ _cell.length_a 62.153 _cell.length_b 61.66 _cell.length_c 61.525 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DCJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 47.98874 30.83 59.872359 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 301 1_555 I O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 D MG MG . A MG 301 1_555 I O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 3DCJ _atom_sites.fract_transf_matrix[1][1] 0.016089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003806 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THH A 1 401 401 THH THH . D 3 MG A 1 301 301 MG MG . E 4 CL A 1 302 302 CL CL . F 2 THH B 1 401 401 THH THH . G 5 NO3 B 1 301 301 NO3 NO3 . H 4 CL B 1 302 302 CL CL . I 6 HOH A 1 402 2 HOH HOH . I 6 HOH A 2 403 3 HOH HOH . I 6 HOH A 3 404 5 HOH HOH . I 6 HOH A 4 405 8 HOH HOH . I 6 HOH A 5 406 12 HOH HOH . I 6 HOH A 6 407 15 HOH HOH . I 6 HOH A 7 408 20 HOH HOH . I 6 HOH A 8 409 23 HOH HOH . I 6 HOH A 9 410 26 HOH HOH . I 6 HOH A 10 411 29 HOH HOH . I 6 HOH A 11 412 31 HOH HOH . I 6 HOH A 12 413 37 HOH HOH . I 6 HOH A 13 414 38 HOH HOH . I 6 HOH A 14 415 42 HOH HOH . I 6 HOH A 15 416 43 HOH HOH . I 6 HOH A 16 417 44 HOH HOH . I 6 HOH A 17 418 46 HOH HOH . I 6 HOH A 18 419 47 HOH HOH . I 6 HOH A 19 420 50 HOH HOH . I 6 HOH A 20 421 52 HOH HOH . I 6 HOH A 21 422 53 HOH HOH . I 6 HOH A 22 423 55 HOH HOH . I 6 HOH A 23 424 56 HOH HOH . I 6 HOH A 24 425 59 HOH HOH . I 6 HOH A 25 426 60 HOH HOH . I 6 HOH A 26 427 62 HOH HOH . I 6 HOH A 27 428 63 HOH HOH . I 6 HOH A 28 429 64 HOH HOH . I 6 HOH A 29 430 68 HOH HOH . I 6 HOH A 30 431 71 HOH HOH . I 6 HOH A 31 432 72 HOH HOH . I 6 HOH A 32 433 75 HOH HOH . I 6 HOH A 33 434 82 HOH HOH . I 6 HOH A 34 435 83 HOH HOH . I 6 HOH A 35 436 84 HOH HOH . I 6 HOH A 36 437 85 HOH HOH . I 6 HOH A 37 438 88 HOH HOH . I 6 HOH A 38 439 90 HOH HOH . I 6 HOH A 39 440 92 HOH HOH . I 6 HOH A 40 441 93 HOH HOH . I 6 HOH A 41 442 95 HOH HOH . I 6 HOH A 42 443 96 HOH HOH . I 6 HOH A 43 444 98 HOH HOH . I 6 HOH A 44 445 99 HOH HOH . I 6 HOH A 45 446 102 HOH HOH . I 6 HOH A 46 447 106 HOH HOH . I 6 HOH A 47 448 107 HOH HOH . I 6 HOH A 48 449 109 HOH HOH . I 6 HOH A 49 450 111 HOH HOH . I 6 HOH A 50 451 112 HOH HOH . I 6 HOH A 51 452 113 HOH HOH . I 6 HOH A 52 453 119 HOH HOH . I 6 HOH A 53 454 120 HOH HOH . I 6 HOH A 54 455 126 HOH HOH . I 6 HOH A 55 456 127 HOH HOH . I 6 HOH A 56 457 128 HOH HOH . I 6 HOH A 57 458 129 HOH HOH . I 6 HOH A 58 459 131 HOH HOH . I 6 HOH A 59 460 134 HOH HOH . I 6 HOH A 60 461 138 HOH HOH . I 6 HOH A 61 462 140 HOH HOH . I 6 HOH A 62 463 141 HOH HOH . I 6 HOH A 63 464 142 HOH HOH . I 6 HOH A 64 465 145 HOH HOH . I 6 HOH A 65 466 147 HOH HOH . I 6 HOH A 66 467 149 HOH HOH . I 6 HOH A 67 468 150 HOH HOH . I 6 HOH A 68 469 151 HOH HOH . I 6 HOH A 69 470 153 HOH HOH . I 6 HOH A 70 471 154 HOH HOH . I 6 HOH A 71 472 156 HOH HOH . I 6 HOH A 72 473 157 HOH HOH . I 6 HOH A 73 474 158 HOH HOH . I 6 HOH A 74 475 159 HOH HOH . I 6 HOH A 75 476 165 HOH HOH . I 6 HOH A 76 477 166 HOH HOH . I 6 HOH A 77 478 167 HOH HOH . I 6 HOH A 78 479 170 HOH HOH . I 6 HOH A 79 480 173 HOH HOH . I 6 HOH A 80 481 175 HOH HOH . I 6 HOH A 81 482 176 HOH HOH . I 6 HOH A 82 483 177 HOH HOH . I 6 HOH A 83 484 178 HOH HOH . I 6 HOH A 84 485 179 HOH HOH . I 6 HOH A 85 486 193 HOH HOH . I 6 HOH A 86 487 195 HOH HOH . I 6 HOH A 87 488 200 HOH HOH . I 6 HOH A 88 489 211 HOH HOH . I 6 HOH A 89 490 215 HOH HOH . I 6 HOH A 90 491 217 HOH HOH . I 6 HOH A 91 492 220 HOH HOH . I 6 HOH A 92 493 223 HOH HOH . I 6 HOH A 93 494 229 HOH HOH . I 6 HOH A 94 495 231 HOH HOH . I 6 HOH A 95 496 232 HOH HOH . I 6 HOH A 96 497 235 HOH HOH . I 6 HOH A 97 498 236 HOH HOH . I 6 HOH A 98 499 238 HOH HOH . I 6 HOH A 99 500 240 HOH HOH . I 6 HOH A 100 501 241 HOH HOH . I 6 HOH A 101 502 242 HOH HOH . I 6 HOH A 102 503 243 HOH HOH . I 6 HOH A 103 504 245 HOH HOH . I 6 HOH A 104 505 251 HOH HOH . I 6 HOH A 105 506 252 HOH HOH . I 6 HOH A 106 507 253 HOH HOH . I 6 HOH A 107 508 256 HOH HOH . I 6 HOH A 108 509 257 HOH HOH . I 6 HOH A 109 510 259 HOH HOH . I 6 HOH A 110 511 261 HOH HOH . I 6 HOH A 111 512 262 HOH HOH . I 6 HOH A 112 513 263 HOH HOH . I 6 HOH A 113 514 267 HOH HOH . I 6 HOH A 114 515 271 HOH HOH . I 6 HOH A 115 516 274 HOH HOH . I 6 HOH A 116 517 278 HOH HOH . I 6 HOH A 117 518 283 HOH HOH . I 6 HOH A 118 519 287 HOH HOH . I 6 HOH A 119 520 290 HOH HOH . I 6 HOH A 120 521 292 HOH HOH . I 6 HOH A 121 522 293 HOH HOH . I 6 HOH A 122 523 294 HOH HOH . I 6 HOH A 123 524 296 HOH HOH . I 6 HOH A 124 525 298 HOH HOH . I 6 HOH A 125 526 299 HOH HOH . I 6 HOH A 126 527 301 HOH HOH . I 6 HOH A 127 528 302 HOH HOH . I 6 HOH A 128 529 304 HOH HOH . I 6 HOH A 129 530 307 HOH HOH . I 6 HOH A 130 531 309 HOH HOH . I 6 HOH A 131 532 313 HOH HOH . I 6 HOH A 132 533 316 HOH HOH . I 6 HOH A 133 534 317 HOH HOH . I 6 HOH A 134 535 319 HOH HOH . I 6 HOH A 135 536 320 HOH HOH . I 6 HOH A 136 537 322 HOH HOH . I 6 HOH A 137 538 328 HOH HOH . I 6 HOH A 138 539 329 HOH HOH . I 6 HOH A 139 540 334 HOH HOH . I 6 HOH A 140 541 295 HOH HOH . J 6 HOH B 1 541 335 HOH HOH . J 6 HOH B 2 542 4 HOH HOH . J 6 HOH B 3 543 6 HOH HOH . J 6 HOH B 4 544 7 HOH HOH . J 6 HOH B 5 545 9 HOH HOH . J 6 HOH B 6 546 10 HOH HOH . J 6 HOH B 7 547 11 HOH HOH . J 6 HOH B 8 548 13 HOH HOH . J 6 HOH B 9 549 14 HOH HOH . J 6 HOH B 10 550 17 HOH HOH . J 6 HOH B 11 551 18 HOH HOH . J 6 HOH B 12 552 19 HOH HOH . J 6 HOH B 13 553 21 HOH HOH . J 6 HOH B 14 554 22 HOH HOH . J 6 HOH B 15 555 24 HOH HOH . J 6 HOH B 16 556 25 HOH HOH . J 6 HOH B 17 557 27 HOH HOH . J 6 HOH B 18 558 28 HOH HOH . J 6 HOH B 19 559 30 HOH HOH . J 6 HOH B 20 560 32 HOH HOH . J 6 HOH B 21 561 33 HOH HOH . J 6 HOH B 22 562 34 HOH HOH . J 6 HOH B 23 563 35 HOH HOH . J 6 HOH B 24 564 36 HOH HOH . J 6 HOH B 25 565 39 HOH HOH . J 6 HOH B 26 566 40 HOH HOH . J 6 HOH B 27 567 41 HOH HOH . J 6 HOH B 28 568 45 HOH HOH . J 6 HOH B 29 569 48 HOH HOH . J 6 HOH B 30 570 49 HOH HOH . J 6 HOH B 31 571 51 HOH HOH . J 6 HOH B 32 572 54 HOH HOH . J 6 HOH B 33 573 57 HOH HOH . J 6 HOH B 34 574 58 HOH HOH . J 6 HOH B 35 575 61 HOH HOH . J 6 HOH B 36 576 65 HOH HOH . J 6 HOH B 37 577 66 HOH HOH . J 6 HOH B 38 578 67 HOH HOH . J 6 HOH B 39 579 69 HOH HOH . J 6 HOH B 40 580 70 HOH HOH . J 6 HOH B 41 581 73 HOH HOH . J 6 HOH B 42 582 74 HOH HOH . J 6 HOH B 43 583 76 HOH HOH . J 6 HOH B 44 584 78 HOH HOH . J 6 HOH B 45 585 79 HOH HOH . J 6 HOH B 46 586 80 HOH HOH . J 6 HOH B 47 587 81 HOH HOH . J 6 HOH B 48 588 86 HOH HOH . J 6 HOH B 49 589 87 HOH HOH . J 6 HOH B 50 590 89 HOH HOH . J 6 HOH B 51 591 91 HOH HOH . J 6 HOH B 52 592 97 HOH HOH . J 6 HOH B 53 593 100 HOH HOH . J 6 HOH B 54 594 101 HOH HOH . J 6 HOH B 55 595 103 HOH HOH . J 6 HOH B 56 596 104 HOH HOH . J 6 HOH B 57 597 105 HOH HOH . J 6 HOH B 58 598 108 HOH HOH . J 6 HOH B 59 599 110 HOH HOH . J 6 HOH B 60 600 114 HOH HOH . J 6 HOH B 61 601 115 HOH HOH . J 6 HOH B 62 602 116 HOH HOH . J 6 HOH B 63 603 118 HOH HOH . J 6 HOH B 64 604 121 HOH HOH . J 6 HOH B 65 605 124 HOH HOH . J 6 HOH B 66 606 125 HOH HOH . J 6 HOH B 67 607 132 HOH HOH . J 6 HOH B 68 608 135 HOH HOH . J 6 HOH B 69 609 136 HOH HOH . J 6 HOH B 70 610 139 HOH HOH . J 6 HOH B 71 611 143 HOH HOH . J 6 HOH B 72 612 144 HOH HOH . J 6 HOH B 73 613 146 HOH HOH . J 6 HOH B 74 614 148 HOH HOH . J 6 HOH B 75 615 152 HOH HOH . J 6 HOH B 76 616 155 HOH HOH . J 6 HOH B 77 617 160 HOH HOH . J 6 HOH B 78 618 161 HOH HOH . J 6 HOH B 79 619 163 HOH HOH . J 6 HOH B 80 620 164 HOH HOH . J 6 HOH B 81 621 168 HOH HOH . J 6 HOH B 82 622 169 HOH HOH . J 6 HOH B 83 623 171 HOH HOH . J 6 HOH B 84 624 172 HOH HOH . J 6 HOH B 85 625 174 HOH HOH . J 6 HOH B 86 626 180 HOH HOH . J 6 HOH B 87 627 181 HOH HOH . J 6 HOH B 88 628 184 HOH HOH . J 6 HOH B 89 629 186 HOH HOH . J 6 HOH B 90 630 187 HOH HOH . J 6 HOH B 91 631 188 HOH HOH . J 6 HOH B 92 632 189 HOH HOH . J 6 HOH B 93 633 190 HOH HOH . J 6 HOH B 94 634 191 HOH HOH . J 6 HOH B 95 635 192 HOH HOH . J 6 HOH B 96 636 194 HOH HOH . J 6 HOH B 97 637 196 HOH HOH . J 6 HOH B 98 638 197 HOH HOH . J 6 HOH B 99 639 198 HOH HOH . J 6 HOH B 100 640 199 HOH HOH . J 6 HOH B 101 641 202 HOH HOH . J 6 HOH B 102 642 204 HOH HOH . J 6 HOH B 103 643 205 HOH HOH . J 6 HOH B 104 644 206 HOH HOH . J 6 HOH B 105 645 207 HOH HOH . J 6 HOH B 106 646 208 HOH HOH . J 6 HOH B 107 647 210 HOH HOH . J 6 HOH B 108 648 213 HOH HOH . J 6 HOH B 109 649 214 HOH HOH . J 6 HOH B 110 650 216 HOH HOH . J 6 HOH B 111 651 218 HOH HOH . J 6 HOH B 112 652 219 HOH HOH . J 6 HOH B 113 653 225 HOH HOH . J 6 HOH B 114 654 227 HOH HOH . J 6 HOH B 115 655 228 HOH HOH . J 6 HOH B 116 656 230 HOH HOH . J 6 HOH B 117 657 233 HOH HOH . J 6 HOH B 118 658 234 HOH HOH . J 6 HOH B 119 659 237 HOH HOH . J 6 HOH B 120 660 239 HOH HOH . J 6 HOH B 121 661 244 HOH HOH . J 6 HOH B 122 662 246 HOH HOH . J 6 HOH B 123 663 247 HOH HOH . J 6 HOH B 124 664 258 HOH HOH . J 6 HOH B 125 665 264 HOH HOH . J 6 HOH B 126 666 265 HOH HOH . J 6 HOH B 127 667 266 HOH HOH . J 6 HOH B 128 668 268 HOH HOH . J 6 HOH B 129 669 270 HOH HOH . J 6 HOH B 130 670 273 HOH HOH . J 6 HOH B 131 671 277 HOH HOH . J 6 HOH B 132 672 281 HOH HOH . J 6 HOH B 133 673 282 HOH HOH . J 6 HOH B 134 674 284 HOH HOH . J 6 HOH B 135 675 285 HOH HOH . J 6 HOH B 136 676 286 HOH HOH . J 6 HOH B 137 677 289 HOH HOH . J 6 HOH B 138 678 300 HOH HOH . J 6 HOH B 139 679 303 HOH HOH . J 6 HOH B 140 680 305 HOH HOH . J 6 HOH B 141 681 306 HOH HOH . J 6 HOH B 142 682 315 HOH HOH . J 6 HOH B 143 683 321 HOH HOH . J 6 HOH B 144 684 324 HOH HOH . J 6 HOH B 145 685 326 HOH HOH . J 6 HOH B 146 686 331 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . G 5 2.079 -4.232 12.994 1 15.57 ? N NO3 301 B 1 HETATM 2 O O1 NO3 . . . G 5 3.089 -5.03 12.444 1 15.82 ? O1 NO3 301 B 1 HETATM 3 O O2 NO3 . . . G 5 2.215 -3.093 13.75 1 16.9 ? O2 NO3 301 B 1 HETATM 4 O O3 NO3 . . . G 5 0.809 -4.602 12.713 1 21.12 ? O3 NO3 301 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #