data_3DCO
#
_model_server_result.job_id            BBwQMQcU2-4RUb7skcoc9g 
_model_server_result.datetime_utc      '2025-03-13 15:19:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    3DCO 
#
_exptl.entry_id    3DCO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DCO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 109 N SER 94 1_555 D MG MG . N MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc2 E O2B ADP . N ADP 401 1_555 D MG MG . N MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc3 F MG MG . A MG 501 1_555 H O1G GTP . B GTP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 218 n n 
PG O2G GTP sing 219 n n 
PG O3G GTP sing 220 n n 
PG O3B GTP sing 221 n n 
O2G HOG2 GTP sing 222 n n 
O3G HOG3 GTP sing 223 n n 
O3B PB GTP sing 224 n n 
PB O1B GTP doub 225 n n 
PB O2B GTP sing 226 n n 
PB O3A GTP sing 227 n n 
O2B HOB2 GTP sing 228 n n 
O3A PA GTP sing 229 n n 
PA O1A GTP doub 230 n n 
PA O2A GTP sing 231 n n 
PA O5' GTP sing 232 n n 
O2A HOA2 GTP sing 233 n n 
O5' C5' GTP sing 234 n n 
C5' C4' GTP sing 235 n n 
C5' H5' GTP sing 236 n n 
C5' "H5''" GTP sing 237 n n 
C4' O4' GTP sing 238 n n 
C4' C3' GTP sing 239 n n 
C4' H4' GTP sing 240 n n 
O4' C1' GTP sing 241 n n 
C3' O3' GTP sing 242 n n 
C3' C2' GTP sing 243 n n 
C3' H3' GTP sing 244 n n 
O3' HO3' GTP sing 245 n n 
C2' O2' GTP sing 246 n n 
C2' C1' GTP sing 247 n n 
C2' H2' GTP sing 248 n n 
O2' HO2' GTP sing 249 n n 
C1' N9 GTP sing 250 n n 
C1' H1' GTP sing 251 n n 
N9 C8 GTP sing 252 n y 
N9 C4 GTP sing 253 n y 
C8 N7 GTP doub 254 n y 
C8 H8 GTP sing 255 n n 
N7 C5 GTP sing 256 n y 
C5 C6 GTP sing 257 n n 
C5 C4 GTP doub 258 n y 
C6 O6 GTP doub 259 n n 
C6 N1 GTP sing 260 n n 
N1 C2 GTP sing 261 n n 
N1 HN1 GTP sing 262 n n 
C2 N2 GTP sing 263 n n 
C2 N3 GTP doub 264 n n 
N2 HN21 GTP sing 265 n n 
N2 HN22 GTP sing 266 n n 
N3 C4 GTP sing 267 n n 
#
_atom_sites.entry_id                     3DCO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG N 1 402 402 MG MG . 
E 5 ADP N 1 401 401 ADP ADP . 
F 4 MG A 1 501 501 MG MG . 
G 6 ZN A 1 900 900 ZN ZN . 
H 7 GTP B 1 500 500 GTP GTP . 
I 8 GDP B 1 600 600 GDP GDP . 
J 9 TA1 B 1 601 601 TA1 TA1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . H 7 106.994 4.473 61.504 1 29.97 ? PG GTP 500 B 1 
HETATM 2 O O1G GTP . . . H 7 105.679 4.242 60.789 1 28.7 ? O1G GTP 500 B 1 
HETATM 3 O O2G GTP . . . H 7 107.605 5.843 61.183 1 34.97 ? O2G GTP 500 B 1 
HETATM 4 O O3G GTP . . . H 7 108.071 3.482 61.073 1 32.1 ? O3G GTP 500 B 1 
HETATM 5 O O3B GTP . . . H 7 106.6 4.281 63.103 1 35.17 ? O3B GTP 500 B 1 
HETATM 6 P PB GTP . . . H 7 105.914 2.946 63.784 1 41.4 ? PB GTP 500 B 1 
HETATM 7 O O1B GTP . . . H 7 104.503 3.177 64.061 1 41.17 ? O1B GTP 500 B 1 
HETATM 8 O O2B GTP . . . H 7 106.829 2.57 64.939 1 42.02 ? O2B GTP 500 B 1 
HETATM 9 O O3A GTP . . . H 7 106.152 1.829 62.768 1 39.24 ? O3A GTP 500 B 1 
HETATM 10 P PA GTP . . . H 7 105.616 0.417 62.551 1 41.34 ? PA GTP 500 B 1 
HETATM 11 O O1A GTP . . . H 7 106.252 -0.117 61.313 1 43.37 ? O1A GTP 500 B 1 
HETATM 12 O O2A GTP . . . H 7 104.142 0.377 62.586 1 44.48 ? O2A GTP 500 B 1 
HETATM 13 O O5' GTP . . . H 7 106.259 -0.427 63.809 1 34.27 ? O5' GTP 500 B 1 
HETATM 14 C C5' GTP . . . H 7 105.881 -1.793 63.805 1 25.47 ? C5' GTP 500 B 1 
HETATM 15 C C4' GTP . . . H 7 106.431 -2.631 64.914 1 17.26 ? C4' GTP 500 B 1 
HETATM 16 O O4' GTP . . . H 7 105.559 -2.581 66.072 1 18.2 ? O4' GTP 500 B 1 
HETATM 17 C C3' GTP . . . H 7 106.437 -4.074 64.462 1 18.14 ? C3' GTP 500 B 1 
HETATM 18 O O3' GTP . . . H 7 107.426 -4.791 65.165 1 19.98 ? O3' GTP 500 B 1 
HETATM 19 C C2' GTP . . . H 7 105.02 -4.513 64.796 1 17.5 ? C2' GTP 500 B 1 
HETATM 20 O O2' GTP . . . H 7 104.998 -5.927 65.013 1 19.33 ? O2' GTP 500 B 1 
HETATM 21 C C1' GTP . . . H 7 104.687 -3.722 66.071 1 18.43 ? C1' GTP 500 B 1 
HETATM 22 N N9 GTP . . . H 7 103.3 -3.236 66.175 1 9.96 ? N9 GTP 500 B 1 
HETATM 23 C C8 GTP . . . H 7 102.642 -2.419 65.289 1 11.6 ? C8 GTP 500 B 1 
HETATM 24 N N7 GTP . . . H 7 101.414 -2.151 65.641 1 7.31 ? N7 GTP 500 B 1 
HETATM 25 C C5 GTP . . . H 7 101.238 -2.839 66.817 1 2 ? C5 GTP 500 B 1 
HETATM 26 C C6 GTP . . . H 7 100.123 -2.94 67.648 1 3.48 ? C6 GTP 500 B 1 
HETATM 27 O O6 GTP . . . H 7 99.036 -2.393 67.483 1 2.56 ? O6 GTP 500 B 1 
HETATM 28 N N1 GTP . . . H 7 100.344 -3.749 68.785 1 2 ? N1 GTP 500 B 1 
HETATM 29 C C2 GTP . . . H 7 101.526 -4.397 69.068 1 2 ? C2 GTP 500 B 1 
HETATM 30 N N2 GTP . . . H 7 101.554 -5.114 70.154 1 2 ? N2 GTP 500 B 1 
HETATM 31 N N3 GTP . . . H 7 102.598 -4.32 68.28 1 2 ? N3 GTP 500 B 1 
HETATM 32 C C4 GTP . . . H 7 102.402 -3.526 67.178 1 3.56 ? C4 GTP 500 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#