data_3DCV # _model_server_result.job_id 5SkZxNW05yNU3CmZaRMhVg _model_server_result.datetime_utc '2024-10-19 17:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3DCV # _exptl.entry_id 3DCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-hydroxy-3-methylphenyl)-6-phenylpyrimidin-2(5H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DCV _cell.length_a 97.59 _cell.length_b 97.59 _cell.length_c 81.258 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 275 A SER 260 1_555 A N SEP 276 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 276 A SEP 261 1_555 A N GLU 277 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C17 H14 N2 O2' _chem_comp.formula_weight 278.305 _chem_comp.id 55E _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-hydroxy-3-methylphenyl)-6-phenylpyrimidin-2(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C2 55E doub 1 n n N4 C2 55E sing 2 n n C2 N1 55E sing 3 n n N4 C5 55E doub 4 n n C6 C5 55E sing 5 n n C5 C7 55E sing 6 n n C15 C6 55E doub 7 n y C6 C21 55E sing 8 n y C19 C21 55E doub 9 n y C21 H21 55E sing 10 n n C17 C19 55E sing 11 n y C19 C20 55E sing 12 n n C20 H20 55E sing 13 n n C20 H20A 55E sing 14 n n C20 H20B 55E sing 15 n n C16 C17 55E doub 16 n y O18 C17 55E sing 17 n n O18 HO18 55E sing 18 n n C16 C15 55E sing 19 n y C16 H16 55E sing 20 n n C15 H15 55E sing 21 n n C7 C8 55E sing 22 n n C7 H7 55E sing 23 n n C7 H7A 55E sing 24 n n N1 C8 55E doub 25 n n C8 C9 55E sing 26 n n C9 C10 55E doub 27 n y C9 C14 55E sing 28 n y C14 C13 55E doub 29 n y C14 H14 55E sing 30 n n C13 C12 55E sing 31 n y C13 H13 55E sing 32 n n C11 C12 55E doub 33 n y C12 H12 55E sing 34 n n C10 C11 55E sing 35 n y C11 H11 55E sing 36 n n C10 H10 55E sing 37 n n # _atom_sites.entry_id 3DCV _atom_sites.fract_transf_matrix[1][1] 0.010247 _atom_sites.fract_transf_matrix[1][2] 0.005916 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 55E A 1 500 500 55E 55E . C 3 HOH A 1 1002 1002 HOH HOH . C 3 HOH A 2 1003 1003 HOH HOH . C 3 HOH A 3 1006 1006 HOH HOH . C 3 HOH A 4 1007 1007 HOH HOH . C 3 HOH A 5 1008 1008 HOH HOH . C 3 HOH A 6 1009 1009 HOH HOH . C 3 HOH A 7 1010 1010 HOH HOH . C 3 HOH A 8 1011 1011 HOH HOH . C 3 HOH A 9 1012 1012 HOH HOH . C 3 HOH A 10 1013 1013 HOH HOH . C 3 HOH A 11 1014 1014 HOH HOH . C 3 HOH A 12 1015 1015 HOH HOH . C 3 HOH A 13 1016 1016 HOH HOH . C 3 HOH A 14 1017 1017 HOH HOH . C 3 HOH A 15 1018 1018 HOH HOH . C 3 HOH A 16 1019 1019 HOH HOH . C 3 HOH A 17 1020 1020 HOH HOH . C 3 HOH A 18 1021 1021 HOH HOH . C 3 HOH A 19 1022 1022 HOH HOH . C 3 HOH A 20 1023 1023 HOH HOH . C 3 HOH A 21 1024 1024 HOH HOH . C 3 HOH A 22 1025 1025 HOH HOH . C 3 HOH A 23 1026 1026 HOH HOH . C 3 HOH A 24 1027 1027 HOH HOH . C 3 HOH A 25 1028 1028 HOH HOH . C 3 HOH A 26 1029 1029 HOH HOH . C 3 HOH A 27 1030 1030 HOH HOH . C 3 HOH A 28 1031 1031 HOH HOH . C 3 HOH A 29 1032 1032 HOH HOH . C 3 HOH A 30 1033 1033 HOH HOH . C 3 HOH A 31 1034 1034 HOH HOH . C 3 HOH A 32 1035 1035 HOH HOH . C 3 HOH A 33 1036 1036 HOH HOH . C 3 HOH A 34 1037 1037 HOH HOH . C 3 HOH A 35 1038 1038 HOH HOH . C 3 HOH A 36 1039 1039 HOH HOH . C 3 HOH A 37 1040 1040 HOH HOH . C 3 HOH A 38 1041 1041 HOH HOH . C 3 HOH A 39 1042 1042 HOH HOH . C 3 HOH A 40 1043 1043 HOH HOH . C 3 HOH A 41 1044 1044 HOH HOH . C 3 HOH A 42 1045 1045 HOH HOH . C 3 HOH A 43 1046 1046 HOH HOH . C 3 HOH A 44 1047 1047 HOH HOH . C 3 HOH A 45 1048 1048 HOH HOH . C 3 HOH A 46 1049 1049 HOH HOH . C 3 HOH A 47 1050 1050 HOH HOH . C 3 HOH A 48 1051 1051 HOH HOH . C 3 HOH A 49 1052 1052 HOH HOH . C 3 HOH A 50 1053 1053 HOH HOH . C 3 HOH A 51 1054 1054 HOH HOH . C 3 HOH A 52 1055 1055 HOH HOH . C 3 HOH A 53 1056 1056 HOH HOH . C 3 HOH A 54 1057 1057 HOH HOH . C 3 HOH A 55 1058 1058 HOH HOH . C 3 HOH A 56 1059 1059 HOH HOH . C 3 HOH A 57 1060 1060 HOH HOH . C 3 HOH A 58 1061 1061 HOH HOH . C 3 HOH A 59 1062 1062 HOH HOH . C 3 HOH A 60 1063 1063 HOH HOH . C 3 HOH A 61 1064 1064 HOH HOH . C 3 HOH A 62 1065 1065 HOH HOH . C 3 HOH A 63 1066 1066 HOH HOH . C 3 HOH A 64 1067 1067 HOH HOH . C 3 HOH A 65 1068 1068 HOH HOH . C 3 HOH A 66 1069 1069 HOH HOH . C 3 HOH A 67 1070 1070 HOH HOH . C 3 HOH A 68 1071 1071 HOH HOH . C 3 HOH A 69 1072 1072 HOH HOH . C 3 HOH A 70 1073 1073 HOH HOH . C 3 HOH A 71 1074 1074 HOH HOH . C 3 HOH A 72 1075 1075 HOH HOH . C 3 HOH A 73 1076 1076 HOH HOH . C 3 HOH A 74 1077 1077 HOH HOH . C 3 HOH A 75 1078 1078 HOH HOH . C 3 HOH A 76 1079 1079 HOH HOH . C 3 HOH A 77 1080 1080 HOH HOH . C 3 HOH A 78 1081 1081 HOH HOH . C 3 HOH A 79 1082 1082 HOH HOH . C 3 HOH A 80 1083 1083 HOH HOH . C 3 HOH A 81 1084 1084 HOH HOH . C 3 HOH A 82 1085 1085 HOH HOH . C 3 HOH A 83 1086 1086 HOH HOH . C 3 HOH A 84 1087 1087 HOH HOH . C 3 HOH A 85 1088 1088 HOH HOH . C 3 HOH A 86 1089 1089 HOH HOH . C 3 HOH A 87 1090 1090 HOH HOH . C 3 HOH A 88 1091 1091 HOH HOH . C 3 HOH A 89 1092 1092 HOH HOH . C 3 HOH A 90 1093 1093 HOH HOH . C 3 HOH A 91 1094 1094 HOH HOH . C 3 HOH A 92 1095 1095 HOH HOH . C 3 HOH A 93 1096 1096 HOH HOH . C 3 HOH A 94 1097 1097 HOH HOH . C 3 HOH A 95 1098 1098 HOH HOH . C 3 HOH A 96 1099 1099 HOH HOH . C 3 HOH A 97 1100 1100 HOH HOH . C 3 HOH A 98 1101 1101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 55E . . . B 2 15.687 33.56 -0.366 1 40.05 ? O3 55E 500 A 1 HETATM 2 C C2 55E . . . B 2 16.322 34.324 0.392 1 40.35 ? C2 55E 500 A 1 HETATM 3 N N4 55E . . . B 2 17.249 35.147 -0.14 1 35.02 ? N4 55E 500 A 1 HETATM 4 C C5 55E . . . B 2 17.963 35.979 0.645 1 33.32 ? C5 55E 500 A 1 HETATM 5 C C6 55E . . . B 2 18.947 36.903 0.037 1 31.83 ? C6 55E 500 A 1 HETATM 6 C C21 55E . . . B 2 19.762 37.701 0.827 1 28.97 ? C21 55E 500 A 1 HETATM 7 C C19 55E . . . B 2 20.652 38.59 0.231 1 28.03 ? C19 55E 500 A 1 HETATM 8 C C20 55E . . . B 2 21.554 39.446 1.083 1 27.7 ? C20 55E 500 A 1 HETATM 9 C C17 55E . . . B 2 20.71 38.686 -1.15 1 33.43 ? C17 55E 500 A 1 HETATM 10 O O18 55E . . . B 2 21.576 39.548 -1.755 1 37.18 ? O18 55E 500 A 1 HETATM 11 C C16 55E . . . B 2 19.877 37.9 -1.937 1 35.75 ? C16 55E 500 A 1 HETATM 12 C C15 55E . . . B 2 18.991 37.013 -1.345 1 30.55 ? C15 55E 500 A 1 HETATM 13 C C7 55E . . . B 2 17.725 36.013 2.004 1 39.08 ? C7 55E 500 A 1 HETATM 14 C C8 55E . . . B 2 16.773 35.156 2.542 1 47.45 ? C8 55E 500 A 1 HETATM 15 N N1 55E . . . B 2 16.082 34.326 1.725 1 43.42 ? N1 55E 500 A 1 HETATM 16 C C9 55E . . . B 2 16.52 35.189 4.012 1 52.19 ? C9 55E 500 A 1 HETATM 17 C C14 55E . . . B 2 17.544 34.921 4.916 1 57.26 ? C14 55E 500 A 1 HETATM 18 C C13 55E . . . B 2 17.289 34.968 6.288 1 65.71 ? C13 55E 500 A 1 HETATM 19 C C12 55E . . . B 2 16.019 35.293 6.763 1 57.61 ? C12 55E 500 A 1 HETATM 20 C C11 55E . . . B 2 14.998 35.567 5.857 1 52.07 ? C11 55E 500 A 1 HETATM 21 C C10 55E . . . B 2 15.251 35.52 4.486 1 49.72 ? C10 55E 500 A 1 # _model_server_stats.io_time_ms 124 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #