data_3DD3 # _model_server_result.job_id iZMljnpe5339Dah6BDdPjQ _model_server_result.datetime_utc '2024-12-26 13:11:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":210}' # _entry.id 3DD3 # _exptl.entry_id 3DD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.81 _cell.angle_gamma 90 _cell.entry_id 3DD3 _cell.length_a 76.69 _cell.length_b 89.54 _cell.length_c 68.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 102 A CYS 101 1_555 D RU11 RUC . A RUC 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc2 D RU11 RUC . A RUC 211 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 254 n n O1 C6 MES sing 255 n n C2 C3 MES sing 256 n n C2 H21 MES sing 257 n n C2 H22 MES sing 258 n n C3 N4 MES sing 259 n n C3 H31 MES sing 260 n n C3 H32 MES sing 261 n n N4 C5 MES sing 262 n n N4 C7 MES sing 263 n n N4 HN4 MES sing 264 n n C5 C6 MES sing 265 n n C5 H51 MES sing 266 n n C5 H52 MES sing 267 n n C6 H61 MES sing 268 n n C6 H62 MES sing 269 n n C7 C8 MES sing 270 n n C7 H71 MES sing 271 n n C7 H72 MES sing 272 n n C8 S MES sing 273 n n C8 H81 MES sing 274 n n C8 H82 MES sing 275 n n S O1S MES doub 276 n n S O2S MES doub 277 n n S O3S MES sing 278 n n # _atom_sites.entry_id 3DD3 _atom_sites.fract_transf_matrix[1][1] 0.01304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 210 1 MES MES . D 3 RUC A 1 211 1 RUC RUC . E 4 GSH A 1 212 1 GSH GTT . F 2 MES B 1 210 1 MES MES . G 4 GSH B 1 211 1 GSH GTT . H 5 HOH A 1 213 1 HOH HOH . H 5 HOH A 2 214 2 HOH HOH . H 5 HOH A 3 215 3 HOH HOH . H 5 HOH A 4 216 4 HOH HOH . H 5 HOH A 5 217 6 HOH HOH . H 5 HOH A 6 218 8 HOH HOH . H 5 HOH A 7 219 10 HOH HOH . H 5 HOH A 8 220 11 HOH HOH . H 5 HOH A 9 221 12 HOH HOH . H 5 HOH A 10 222 13 HOH HOH . H 5 HOH A 11 223 15 HOH HOH . H 5 HOH A 12 224 19 HOH HOH . H 5 HOH A 13 225 21 HOH HOH . H 5 HOH A 14 226 23 HOH HOH . H 5 HOH A 15 227 25 HOH HOH . H 5 HOH A 16 228 28 HOH HOH . H 5 HOH A 17 229 30 HOH HOH . H 5 HOH A 18 230 31 HOH HOH . H 5 HOH A 19 231 32 HOH HOH . H 5 HOH A 20 232 33 HOH HOH . H 5 HOH A 21 233 34 HOH HOH . H 5 HOH A 22 234 36 HOH HOH . H 5 HOH A 23 235 37 HOH HOH . H 5 HOH A 24 236 40 HOH HOH . H 5 HOH A 25 237 41 HOH HOH . H 5 HOH A 26 238 43 HOH HOH . H 5 HOH A 27 239 44 HOH HOH . H 5 HOH A 28 240 46 HOH HOH . H 5 HOH A 29 241 47 HOH HOH . H 5 HOH A 30 242 48 HOH HOH . H 5 HOH A 31 243 49 HOH HOH . H 5 HOH A 32 244 50 HOH HOH . H 5 HOH A 33 245 51 HOH HOH . H 5 HOH A 34 246 52 HOH HOH . H 5 HOH A 35 247 53 HOH HOH . H 5 HOH A 36 248 55 HOH HOH . H 5 HOH A 37 249 60 HOH HOH . H 5 HOH A 38 250 62 HOH HOH . H 5 HOH A 39 251 63 HOH HOH . H 5 HOH A 40 252 64 HOH HOH . H 5 HOH A 41 253 67 HOH HOH . H 5 HOH A 42 254 68 HOH HOH . I 5 HOH B 1 212 5 HOH HOH . I 5 HOH B 2 213 7 HOH HOH . I 5 HOH B 3 214 9 HOH HOH . I 5 HOH B 4 215 14 HOH HOH . I 5 HOH B 5 216 16 HOH HOH . I 5 HOH B 6 217 17 HOH HOH . I 5 HOH B 7 218 18 HOH HOH . I 5 HOH B 8 219 20 HOH HOH . I 5 HOH B 9 220 22 HOH HOH . I 5 HOH B 10 221 24 HOH HOH . I 5 HOH B 11 222 26 HOH HOH . I 5 HOH B 12 223 27 HOH HOH . I 5 HOH B 13 224 29 HOH HOH . I 5 HOH B 14 225 35 HOH HOH . I 5 HOH B 15 226 38 HOH HOH . I 5 HOH B 16 227 39 HOH HOH . I 5 HOH B 17 228 42 HOH HOH . I 5 HOH B 18 229 45 HOH HOH . I 5 HOH B 19 230 54 HOH HOH . I 5 HOH B 20 231 56 HOH HOH . I 5 HOH B 21 232 57 HOH HOH . I 5 HOH B 22 233 58 HOH HOH . I 5 HOH B 23 234 59 HOH HOH . I 5 HOH B 24 235 61 HOH HOH . I 5 HOH B 25 236 65 HOH HOH . I 5 HOH B 26 237 66 HOH HOH . I 5 HOH B 27 238 69 HOH HOH . I 5 HOH B 28 239 70 HOH HOH . I 5 HOH B 29 240 71 HOH HOH . I 5 HOH B 30 241 72 HOH HOH . I 5 HOH B 31 242 73 HOH HOH . I 5 HOH B 32 243 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . C 2 26.372 -9.693 31.291 1 58.87 ? O1 MES 210 A 1 HETATM 2 C C2 MES . . . C 2 25.349 -10.446 31.888 1 62.2 ? C2 MES 210 A 1 HETATM 3 C C3 MES . . . C 2 24.485 -9.431 32.635 1 66.38 ? C3 MES 210 A 1 HETATM 4 N N4 MES . . . C 2 25.361 -8.59 33.459 1 69.39 ? N4 MES 210 A 1 HETATM 5 C C5 MES . . . C 2 26.784 -8.911 33.61 1 66.82 ? C5 MES 210 A 1 HETATM 6 C C6 MES . . . C 2 27.354 -9.259 32.228 1 63.91 ? C6 MES 210 A 1 HETATM 7 C C7 MES . . . C 2 24.815 -7.396 34.113 1 72.6 ? C7 MES 210 A 1 HETATM 8 C C8 MES . . . C 2 24.206 -7.817 35.457 1 77.85 ? C8 MES 210 A 1 HETATM 9 S S MES . . . C 2 22.759 -7.033 35.799 1 80.91 ? S MES 210 A 1 HETATM 10 O O1S MES . . . C 2 21.729 -8.095 35.898 1 79.28 ? O1S MES 210 A 1 HETATM 11 O O2S MES . . . C 2 22.438 -6.002 34.774 1 79.25 ? O2S MES 210 A 1 HETATM 12 O O3S MES . . . C 2 22.819 -6.362 37.116 1 81.21 ? O3S MES 210 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #