data_3DD3 # _model_server_result.job_id 4bzMFkZMzLVi02a7TpAJUQ _model_server_result.datetime_utc '2024-12-26 13:12:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dd3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":211}' # _entry.id 3DD3 # _exptl.entry_id 3DD3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.81 _cell.angle_gamma 90 _cell.entry_id 3DD3 _cell.length_a 76.69 _cell.length_b 89.54 _cell.length_c 68.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DD3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 102 A CYS 101 1_555 D RU11 RUC . A RUC 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc2 D RU11 RUC . A RUC 211 1_555 B SG CYS 102 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 3DD3 _atom_sites.fract_transf_matrix[1][1] 0.01304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001788 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014631 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MES A 1 210 1 MES MES . D 3 RUC A 1 211 1 RUC RUC . E 4 GSH A 1 212 1 GSH GTT . F 2 MES B 1 210 1 MES MES . G 4 GSH B 1 211 1 GSH GTT . H 5 HOH A 1 213 1 HOH HOH . H 5 HOH A 2 214 2 HOH HOH . H 5 HOH A 3 215 3 HOH HOH . H 5 HOH A 4 216 4 HOH HOH . H 5 HOH A 5 217 6 HOH HOH . H 5 HOH A 6 218 8 HOH HOH . H 5 HOH A 7 219 10 HOH HOH . H 5 HOH A 8 220 11 HOH HOH . H 5 HOH A 9 221 12 HOH HOH . H 5 HOH A 10 222 13 HOH HOH . H 5 HOH A 11 223 15 HOH HOH . H 5 HOH A 12 224 19 HOH HOH . H 5 HOH A 13 225 21 HOH HOH . H 5 HOH A 14 226 23 HOH HOH . H 5 HOH A 15 227 25 HOH HOH . H 5 HOH A 16 228 28 HOH HOH . H 5 HOH A 17 229 30 HOH HOH . H 5 HOH A 18 230 31 HOH HOH . H 5 HOH A 19 231 32 HOH HOH . H 5 HOH A 20 232 33 HOH HOH . H 5 HOH A 21 233 34 HOH HOH . H 5 HOH A 22 234 36 HOH HOH . H 5 HOH A 23 235 37 HOH HOH . H 5 HOH A 24 236 40 HOH HOH . H 5 HOH A 25 237 41 HOH HOH . H 5 HOH A 26 238 43 HOH HOH . H 5 HOH A 27 239 44 HOH HOH . H 5 HOH A 28 240 46 HOH HOH . H 5 HOH A 29 241 47 HOH HOH . H 5 HOH A 30 242 48 HOH HOH . H 5 HOH A 31 243 49 HOH HOH . H 5 HOH A 32 244 50 HOH HOH . H 5 HOH A 33 245 51 HOH HOH . H 5 HOH A 34 246 52 HOH HOH . H 5 HOH A 35 247 53 HOH HOH . H 5 HOH A 36 248 55 HOH HOH . H 5 HOH A 37 249 60 HOH HOH . H 5 HOH A 38 250 62 HOH HOH . H 5 HOH A 39 251 63 HOH HOH . H 5 HOH A 40 252 64 HOH HOH . H 5 HOH A 41 253 67 HOH HOH . H 5 HOH A 42 254 68 HOH HOH . I 5 HOH B 1 212 5 HOH HOH . I 5 HOH B 2 213 7 HOH HOH . I 5 HOH B 3 214 9 HOH HOH . I 5 HOH B 4 215 14 HOH HOH . I 5 HOH B 5 216 16 HOH HOH . I 5 HOH B 6 217 17 HOH HOH . I 5 HOH B 7 218 18 HOH HOH . I 5 HOH B 8 219 20 HOH HOH . I 5 HOH B 9 220 22 HOH HOH . I 5 HOH B 10 221 24 HOH HOH . I 5 HOH B 11 222 26 HOH HOH . I 5 HOH B 12 223 27 HOH HOH . I 5 HOH B 13 224 29 HOH HOH . I 5 HOH B 14 225 35 HOH HOH . I 5 HOH B 15 226 38 HOH HOH . I 5 HOH B 16 227 39 HOH HOH . I 5 HOH B 17 228 42 HOH HOH . I 5 HOH B 18 229 45 HOH HOH . I 5 HOH B 19 230 54 HOH HOH . I 5 HOH B 20 231 56 HOH HOH . I 5 HOH B 21 232 57 HOH HOH . I 5 HOH B 22 233 58 HOH HOH . I 5 HOH B 23 234 59 HOH HOH . I 5 HOH B 24 235 61 HOH HOH . I 5 HOH B 25 236 65 HOH HOH . I 5 HOH B 26 237 66 HOH HOH . I 5 HOH B 27 238 69 HOH HOH . I 5 HOH B 28 239 70 HOH HOH . I 5 HOH B 29 240 71 HOH HOH . I 5 HOH B 30 241 72 HOH HOH . I 5 HOH B 31 242 73 HOH HOH . I 5 HOH B 32 243 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . G 4 16.529 12.535 9.534 0.7 31 ? N1 GSH 211 B 1 HETATM 2 C CA1 GSH . . . G 4 16.248 13.832 8.972 0.7 32.02 ? CA1 GSH 211 B 1 HETATM 3 C C1 GSH . . . G 4 17.452 14.702 9.221 0.7 31.34 ? C1 GSH 211 B 1 HETATM 4 O O11 GSH . . . G 4 18.239 15.095 8.344 0.7 29.64 ? O11 GSH 211 B 1 HETATM 5 O O12 GSH . . . G 4 17.669 15.046 10.393 0.7 31.86 ? O12 GSH 211 B 1 HETATM 6 C CB1 GSH . . . G 4 15.851 13.704 7.511 0.7 32.1 ? CB1 GSH 211 B 1 HETATM 7 C CG1 GSH . . . G 4 15.33 15.03 6.981 0.7 34.89 ? CG1 GSH 211 B 1 HETATM 8 C CD1 GSH . . . G 4 13.953 14.975 6.351 0.7 36.12 ? CD1 GSH 211 B 1 HETATM 9 O OE1 GSH . . . G 4 12.821 14.807 7.154 0.7 37.96 ? OE1 GSH 211 B 1 HETATM 10 N N2 GSH . . . G 4 13.878 15.139 5.039 0.7 37.82 ? N2 GSH 211 B 1 HETATM 11 C CA2 GSH . . . G 4 12.767 15.803 4.36 0.7 41.06 ? CA2 GSH 211 B 1 HETATM 12 C C2 GSH . . . G 4 12.704 15.332 2.94 0.7 37.83 ? C2 GSH 211 B 1 HETATM 13 O O2 GSH . . . G 4 13.902 15.218 2.215 0.7 37.94 ? O2 GSH 211 B 1 HETATM 14 C CB2 GSH . . . G 4 12.893 17.338 4.315 0.7 43.26 ? CB2 GSH 211 B 1 HETATM 15 S SG2 GSH . . . G 4 13.37 18.153 5.876 0.7 52.38 ? SG2 GSH 211 B 1 HETATM 16 N N3 GSH . . . G 4 11.516 15.048 2.422 0.7 38.39 ? N3 GSH 211 B 1 HETATM 17 C CA3 GSH . . . G 4 11.343 14.759 0.998 0.7 36.93 ? CA3 GSH 211 B 1 HETATM 18 C C3 GSH . . . G 4 11.114 13.295 0.723 0.7 36.32 ? C3 GSH 211 B 1 HETATM 19 O O31 GSH . . . G 4 11.02 12.865 -0.447 0.7 36.87 ? O31 GSH 211 B 1 HETATM 20 O O32 GSH . . . G 4 10.992 12.467 1.652 0.7 36.67 ? O32 GSH 211 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #