data_3DD4 # _model_server_result.job_id BdWQufvKvK44HdPQQeCTOA _model_server_result.datetime_utc '2025-03-06 08:46:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":404}' # _entry.id 3DD4 # _exptl.entry_id 3DD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DD4 _cell.length_a 96.3 _cell.length_b 96.3 _cell.length_c 71.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 148 A ASP 148 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc2 A OD1 ASN 150 A ASN 150 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A OD1 ASP 152 A ASP 152 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc4 A O TYR 154 A TYR 154 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc5 A OE1 GLU 159 A GLU 159 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc6 A OE2 GLU 159 A GLU 159 1_555 C CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 A OD1 ASP 196 A ASP 196 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc8 A OD1 ASN 198 A ASN 198 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc9 A ND2 ASN 198 A ASN 198 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc11 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? metalc ? metalc12 A O VAL 202 A VAL 202 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc13 A OE1 GLU 207 A GLU 207 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc14 A OE2 GLU 207 A GLU 207 1_555 B CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DD4 _atom_sites.fract_transf_matrix[1][1] 0.010384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 404 404 CA CA2 . C 2 CA A 1 405 405 CA CA2 . D 3 HOH A 1 406 1 HOH TIP . D 3 HOH A 2 407 2 HOH TIP . D 3 HOH A 3 408 3 HOH TIP . D 3 HOH A 4 409 4 HOH TIP . D 3 HOH A 5 410 5 HOH TIP . D 3 HOH A 6 411 6 HOH TIP . D 3 HOH A 7 412 7 HOH TIP . D 3 HOH A 8 413 8 HOH TIP . D 3 HOH A 9 414 9 HOH TIP . D 3 HOH A 10 415 10 HOH TIP . D 3 HOH A 11 416 11 HOH TIP . D 3 HOH A 12 417 12 HOH TIP . D 3 HOH A 13 418 13 HOH TIP . D 3 HOH A 14 419 14 HOH TIP . D 3 HOH A 15 420 15 HOH TIP . D 3 HOH A 16 421 16 HOH TIP . D 3 HOH A 17 422 17 HOH TIP . D 3 HOH A 18 423 18 HOH TIP . D 3 HOH A 19 424 19 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.543 _atom_site.Cartn_y -33.889 _atom_site.Cartn_z -31.85 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #