data_3DDC # _model_server_result.job_id sbsbIkGczzd6wQB-3x8xNA _model_server_result.datetime_utc '2025-01-02 18:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ddc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 3DDC # _exptl.entry_id 3DDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125 _cell.angle_gamma 90 _cell.entry_id 3DDC _cell.length_a 79.6 _cell.length_b 88 _cell.length_c 56.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 47.192931 0 46.282091 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc3 D O2G GNP . A GNP 500 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc4 D O2B GNP . A GNP 500 1_555 C MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 C MG MG . A MG 600 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc6 C MG MG . A MG 600 1_555 E O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DDC _atom_sites.fract_transf_matrix[1][1] 0.012563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008797 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 600 600 MG MG . D 4 GNP A 1 500 500 GNP GNP . E 5 HOH A 1 601 1 HOH HOH . E 5 HOH A 2 602 2 HOH HOH . E 5 HOH A 3 603 3 HOH HOH . E 5 HOH A 4 604 4 HOH HOH . E 5 HOH A 5 605 5 HOH HOH . E 5 HOH A 6 606 8 HOH HOH . E 5 HOH A 7 607 9 HOH HOH . E 5 HOH A 8 608 10 HOH HOH . E 5 HOH A 9 609 11 HOH HOH . E 5 HOH A 10 610 12 HOH HOH . E 5 HOH A 11 611 13 HOH HOH . E 5 HOH A 12 612 14 HOH HOH . E 5 HOH A 13 613 20 HOH HOH . E 5 HOH A 14 614 21 HOH HOH . E 5 HOH A 15 615 22 HOH HOH . E 5 HOH A 16 616 26 HOH HOH . E 5 HOH A 17 617 27 HOH HOH . E 5 HOH A 18 618 28 HOH HOH . E 5 HOH A 19 619 29 HOH HOH . E 5 HOH A 20 620 31 HOH HOH . E 5 HOH A 21 621 32 HOH HOH . E 5 HOH A 22 622 33 HOH HOH . E 5 HOH A 23 623 37 HOH HOH . E 5 HOH A 24 624 38 HOH HOH . E 5 HOH A 25 625 39 HOH HOH . E 5 HOH A 26 626 45 HOH HOH . E 5 HOH A 27 627 47 HOH HOH . E 5 HOH A 28 628 48 HOH HOH . E 5 HOH A 29 629 49 HOH HOH . E 5 HOH A 30 630 50 HOH HOH . E 5 HOH A 31 631 51 HOH HOH . E 5 HOH A 32 632 52 HOH HOH . E 5 HOH A 33 633 53 HOH HOH . E 5 HOH A 34 634 54 HOH HOH . E 5 HOH A 35 635 57 HOH HOH . E 5 HOH A 36 636 58 HOH HOH . E 5 HOH A 37 637 59 HOH HOH . E 5 HOH A 38 638 60 HOH HOH . E 5 HOH A 39 639 61 HOH HOH . E 5 HOH A 40 640 62 HOH HOH . E 5 HOH A 41 641 64 HOH HOH . E 5 HOH A 42 642 65 HOH HOH . E 5 HOH A 43 643 66 HOH HOH . E 5 HOH A 44 644 69 HOH HOH . E 5 HOH A 45 645 70 HOH HOH . E 5 HOH A 46 646 71 HOH HOH . E 5 HOH A 47 647 74 HOH HOH . E 5 HOH A 48 648 75 HOH HOH . E 5 HOH A 49 649 76 HOH HOH . E 5 HOH A 50 650 77 HOH HOH . E 5 HOH A 51 651 82 HOH HOH . E 5 HOH A 52 652 84 HOH HOH . E 5 HOH A 53 653 89 HOH HOH . E 5 HOH A 54 654 90 HOH HOH . E 5 HOH A 55 655 92 HOH HOH . E 5 HOH A 56 656 93 HOH HOH . E 5 HOH A 57 657 95 HOH HOH . E 5 HOH A 58 658 96 HOH HOH . E 5 HOH A 59 659 97 HOH HOH . E 5 HOH A 60 660 98 HOH HOH . E 5 HOH A 61 661 102 HOH HOH . E 5 HOH A 62 662 107 HOH HOH . E 5 HOH A 63 663 108 HOH HOH . E 5 HOH A 64 664 114 HOH HOH . E 5 HOH A 65 665 115 HOH HOH . F 5 HOH B 1 6 6 HOH HOH . F 5 HOH B 2 7 7 HOH HOH . F 5 HOH B 3 15 15 HOH HOH . F 5 HOH B 4 16 16 HOH HOH . F 5 HOH B 5 17 17 HOH HOH . F 5 HOH B 6 18 18 HOH HOH . F 5 HOH B 7 19 19 HOH HOH . F 5 HOH B 8 23 23 HOH HOH . F 5 HOH B 9 24 24 HOH HOH . F 5 HOH B 10 25 25 HOH HOH . F 5 HOH B 11 30 30 HOH HOH . F 5 HOH B 12 34 34 HOH HOH . F 5 HOH B 13 35 35 HOH HOH . F 5 HOH B 14 36 36 HOH HOH . F 5 HOH B 15 40 40 HOH HOH . F 5 HOH B 16 41 41 HOH HOH . F 5 HOH B 17 42 42 HOH HOH . F 5 HOH B 18 43 43 HOH HOH . F 5 HOH B 19 44 44 HOH HOH . F 5 HOH B 20 46 46 HOH HOH . F 5 HOH B 21 55 55 HOH HOH . F 5 HOH B 22 56 56 HOH HOH . F 5 HOH B 23 63 63 HOH HOH . F 5 HOH B 24 67 67 HOH HOH . F 5 HOH B 25 68 68 HOH HOH . F 5 HOH B 26 72 72 HOH HOH . F 5 HOH B 27 73 73 HOH HOH . F 5 HOH B 28 78 78 HOH HOH . F 5 HOH B 29 79 79 HOH HOH . F 5 HOH B 30 80 80 HOH HOH . F 5 HOH B 31 81 81 HOH HOH . F 5 HOH B 32 83 83 HOH HOH . F 5 HOH B 33 85 85 HOH HOH . F 5 HOH B 34 86 86 HOH HOH . F 5 HOH B 35 87 87 HOH HOH . F 5 HOH B 36 88 88 HOH HOH . F 5 HOH B 37 91 91 HOH HOH . F 5 HOH B 38 94 94 HOH HOH . F 5 HOH B 39 99 99 HOH HOH . F 5 HOH B 40 100 100 HOH HOH . F 5 HOH B 41 101 101 HOH HOH . F 5 HOH B 42 103 103 HOH HOH . F 5 HOH B 43 104 104 HOH HOH . F 5 HOH B 44 105 105 HOH HOH . F 5 HOH B 45 106 106 HOH HOH . F 5 HOH B 46 109 109 HOH HOH . F 5 HOH B 47 110 110 HOH HOH . F 5 HOH B 48 111 111 HOH HOH . F 5 HOH B 49 112 112 HOH HOH . F 5 HOH B 50 113 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 17.691 _atom_site.Cartn_y 36.847 _atom_site.Cartn_z -0.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 600 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #