data_3DDK # _model_server_result.job_id BUcOnn7dpdcboQMvunRkyQ _model_server_result.datetime_utc '2024-12-11 10:20:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ddk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":923}' # _entry.id 3DDK # _exptl.entry_id 3DDK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DDK _cell.length_a 74.36 _cell.length_b 74.36 _cell.length_c 288.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DDK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 G NA NA . A NA 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc2 A O LEU 229 A LEU 229 1_555 E NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc3 A O LYS 315 A LYS 315 1_555 J NA NA . A NA 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc4 A O VAL 367 A VAL 367 1_555 E NA NA . A NA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc5 Q O HOH . A HOH 548 1_555 F NA NA . A NA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc6 Q O HOH . A HOH 594 1_555 G NA NA . A NA 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3DDK _atom_sites.fract_transf_matrix[1][1] 0.013448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 901 901 NA NA . C 2 NA A 1 905 905 NA NA . D 2 NA A 1 906 906 NA NA . E 2 NA A 1 907 907 NA NA . F 2 NA A 1 910 910 NA NA . G 2 NA A 1 912 912 NA NA . H 2 NA A 1 913 913 NA NA . I 2 NA A 1 916 916 NA NA . J 2 NA A 1 918 918 NA NA . K 3 SO4 A 1 919 919 SO4 SO4 . L 3 SO4 A 1 920 920 SO4 SO4 . M 3 SO4 A 1 921 921 SO4 SO4 . N 3 SO4 A 1 922 922 SO4 SO4 . O 3 SO4 A 1 923 923 SO4 SO4 . P 3 SO4 A 1 924 924 SO4 SO4 . Q 4 HOH A 1 501 501 HOH HOH . Q 4 HOH A 2 502 502 HOH HOH . Q 4 HOH A 3 503 503 HOH HOH . Q 4 HOH A 4 504 504 HOH HOH . Q 4 HOH A 5 505 505 HOH HOH . Q 4 HOH A 6 506 506 HOH HOH . Q 4 HOH A 7 507 507 HOH HOH . Q 4 HOH A 8 508 508 HOH HOH . Q 4 HOH A 9 509 509 HOH HOH . Q 4 HOH A 10 510 510 HOH HOH . Q 4 HOH A 11 511 511 HOH HOH . Q 4 HOH A 12 512 512 HOH HOH . Q 4 HOH A 13 513 513 HOH HOH . Q 4 HOH A 14 514 514 HOH HOH . Q 4 HOH A 15 515 515 HOH HOH . Q 4 HOH A 16 516 516 HOH HOH . Q 4 HOH A 17 517 517 HOH HOH . Q 4 HOH A 18 518 518 HOH HOH . Q 4 HOH A 19 519 519 HOH HOH . Q 4 HOH A 20 520 520 HOH HOH . Q 4 HOH A 21 521 521 HOH HOH . Q 4 HOH A 22 522 522 HOH HOH . Q 4 HOH A 23 523 523 HOH HOH . Q 4 HOH A 24 524 524 HOH HOH . Q 4 HOH A 25 525 525 HOH HOH . Q 4 HOH A 26 526 526 HOH HOH . Q 4 HOH A 27 527 527 HOH HOH . Q 4 HOH A 28 528 528 HOH HOH . Q 4 HOH A 29 529 529 HOH HOH . Q 4 HOH A 30 530 530 HOH HOH . Q 4 HOH A 31 531 531 HOH HOH . Q 4 HOH A 32 532 532 HOH HOH . Q 4 HOH A 33 533 533 HOH HOH . Q 4 HOH A 34 534 534 HOH HOH . Q 4 HOH A 35 535 535 HOH HOH . Q 4 HOH A 36 537 537 HOH HOH . Q 4 HOH A 37 538 538 HOH HOH . Q 4 HOH A 38 539 539 HOH HOH . Q 4 HOH A 39 540 540 HOH HOH . Q 4 HOH A 40 541 541 HOH HOH . Q 4 HOH A 41 542 542 HOH HOH . Q 4 HOH A 42 543 543 HOH HOH . Q 4 HOH A 43 544 544 HOH HOH . Q 4 HOH A 44 546 546 HOH HOH . Q 4 HOH A 45 548 548 HOH HOH . Q 4 HOH A 46 549 549 HOH HOH . Q 4 HOH A 47 550 550 HOH HOH . Q 4 HOH A 48 551 551 HOH HOH . Q 4 HOH A 49 554 554 HOH HOH . Q 4 HOH A 50 555 555 HOH HOH . Q 4 HOH A 51 556 556 HOH HOH . Q 4 HOH A 52 557 557 HOH HOH . Q 4 HOH A 53 558 558 HOH HOH . Q 4 HOH A 54 559 559 HOH HOH . Q 4 HOH A 55 560 560 HOH HOH . Q 4 HOH A 56 561 561 HOH HOH . Q 4 HOH A 57 562 562 HOH HOH . Q 4 HOH A 58 563 563 HOH HOH . Q 4 HOH A 59 564 564 HOH HOH . Q 4 HOH A 60 565 565 HOH HOH . Q 4 HOH A 61 566 566 HOH HOH . Q 4 HOH A 62 567 567 HOH HOH . Q 4 HOH A 63 568 568 HOH HOH . Q 4 HOH A 64 570 570 HOH HOH . Q 4 HOH A 65 571 571 HOH HOH . Q 4 HOH A 66 572 572 HOH HOH . Q 4 HOH A 67 573 573 HOH HOH . Q 4 HOH A 68 575 575 HOH HOH . Q 4 HOH A 69 576 576 HOH HOH . Q 4 HOH A 70 577 577 HOH HOH . Q 4 HOH A 71 578 578 HOH HOH . Q 4 HOH A 72 579 579 HOH HOH . Q 4 HOH A 73 580 580 HOH HOH . Q 4 HOH A 74 583 583 HOH HOH . Q 4 HOH A 75 584 584 HOH HOH . Q 4 HOH A 76 585 585 HOH HOH . Q 4 HOH A 77 586 586 HOH HOH . Q 4 HOH A 78 587 587 HOH HOH . Q 4 HOH A 79 589 589 HOH HOH . Q 4 HOH A 80 590 590 HOH HOH . Q 4 HOH A 81 591 591 HOH HOH . Q 4 HOH A 82 592 592 HOH HOH . Q 4 HOH A 83 593 593 HOH HOH . Q 4 HOH A 84 594 594 HOH HOH . Q 4 HOH A 85 595 595 HOH HOH . Q 4 HOH A 86 596 596 HOH HOH . Q 4 HOH A 87 597 597 HOH HOH . Q 4 HOH A 88 598 598 HOH HOH . Q 4 HOH A 89 599 599 HOH HOH . Q 4 HOH A 90 600 600 HOH HOH . Q 4 HOH A 91 601 601 HOH HOH . Q 4 HOH A 92 602 602 HOH HOH . Q 4 HOH A 93 603 603 HOH HOH . Q 4 HOH A 94 604 604 HOH HOH . Q 4 HOH A 95 605 605 HOH HOH . Q 4 HOH A 96 607 607 HOH HOH . Q 4 HOH A 97 608 608 HOH HOH . Q 4 HOH A 98 609 609 HOH HOH . Q 4 HOH A 99 610 610 HOH HOH . Q 4 HOH A 100 611 611 HOH HOH . Q 4 HOH A 101 612 612 HOH HOH . Q 4 HOH A 102 613 613 HOH HOH . Q 4 HOH A 103 614 614 HOH HOH . Q 4 HOH A 104 615 615 HOH HOH . Q 4 HOH A 105 616 616 HOH HOH . Q 4 HOH A 106 617 617 HOH HOH . Q 4 HOH A 107 618 618 HOH HOH . Q 4 HOH A 108 619 619 HOH HOH . Q 4 HOH A 109 620 620 HOH HOH . Q 4 HOH A 110 621 621 HOH HOH . Q 4 HOH A 111 622 622 HOH HOH . Q 4 HOH A 112 623 623 HOH HOH . Q 4 HOH A 113 624 624 HOH HOH . Q 4 HOH A 114 625 625 HOH HOH . Q 4 HOH A 115 627 627 HOH HOH . Q 4 HOH A 116 628 628 HOH HOH . Q 4 HOH A 117 630 630 HOH HOH . Q 4 HOH A 118 631 631 HOH HOH . Q 4 HOH A 119 632 632 HOH HOH . Q 4 HOH A 120 635 635 HOH HOH . Q 4 HOH A 121 636 636 HOH HOH . Q 4 HOH A 122 637 637 HOH HOH . Q 4 HOH A 123 638 638 HOH HOH . Q 4 HOH A 124 641 641 HOH HOH . Q 4 HOH A 125 642 642 HOH HOH . Q 4 HOH A 126 643 643 HOH HOH . Q 4 HOH A 127 644 644 HOH HOH . Q 4 HOH A 128 645 645 HOH HOH . Q 4 HOH A 129 646 646 HOH HOH . Q 4 HOH A 130 648 648 HOH HOH . Q 4 HOH A 131 649 649 HOH HOH . Q 4 HOH A 132 650 650 HOH HOH . Q 4 HOH A 133 651 651 HOH HOH . Q 4 HOH A 134 652 652 HOH HOH . Q 4 HOH A 135 653 653 HOH HOH . Q 4 HOH A 136 654 654 HOH HOH . Q 4 HOH A 137 655 655 HOH HOH . Q 4 HOH A 138 656 656 HOH HOH . Q 4 HOH A 139 657 657 HOH HOH . Q 4 HOH A 140 658 658 HOH HOH . Q 4 HOH A 141 659 659 HOH HOH . Q 4 HOH A 142 660 660 HOH HOH . Q 4 HOH A 143 661 661 HOH HOH . Q 4 HOH A 144 662 662 HOH HOH . Q 4 HOH A 145 663 663 HOH HOH . Q 4 HOH A 146 664 664 HOH HOH . Q 4 HOH A 147 665 665 HOH HOH . Q 4 HOH A 148 667 667 HOH HOH . Q 4 HOH A 149 668 668 HOH HOH . Q 4 HOH A 150 669 669 HOH HOH . Q 4 HOH A 151 670 670 HOH HOH . Q 4 HOH A 152 671 671 HOH HOH . Q 4 HOH A 153 672 672 HOH HOH . Q 4 HOH A 154 673 673 HOH HOH . Q 4 HOH A 155 674 674 HOH HOH . Q 4 HOH A 156 675 675 HOH HOH . Q 4 HOH A 157 676 676 HOH HOH . Q 4 HOH A 158 677 677 HOH HOH . Q 4 HOH A 159 678 678 HOH HOH . Q 4 HOH A 160 679 679 HOH HOH . Q 4 HOH A 161 680 680 HOH HOH . Q 4 HOH A 162 681 681 HOH HOH . Q 4 HOH A 163 682 682 HOH HOH . Q 4 HOH A 164 683 683 HOH HOH . Q 4 HOH A 165 684 684 HOH HOH . Q 4 HOH A 166 685 685 HOH HOH . Q 4 HOH A 167 686 686 HOH HOH . Q 4 HOH A 168 687 687 HOH HOH . Q 4 HOH A 169 688 688 HOH HOH . Q 4 HOH A 170 689 689 HOH HOH . Q 4 HOH A 171 691 691 HOH HOH . Q 4 HOH A 172 692 692 HOH HOH . Q 4 HOH A 173 693 693 HOH HOH . Q 4 HOH A 174 694 694 HOH HOH . Q 4 HOH A 175 695 695 HOH HOH . Q 4 HOH A 176 696 696 HOH HOH . Q 4 HOH A 177 697 697 HOH HOH . Q 4 HOH A 178 698 698 HOH HOH . Q 4 HOH A 179 699 699 HOH HOH . Q 4 HOH A 180 700 700 HOH HOH . Q 4 HOH A 181 701 701 HOH HOH . Q 4 HOH A 182 702 702 HOH HOH . Q 4 HOH A 183 703 703 HOH HOH . Q 4 HOH A 184 704 704 HOH HOH . Q 4 HOH A 185 705 705 HOH HOH . Q 4 HOH A 186 706 706 HOH HOH . Q 4 HOH A 187 707 707 HOH HOH . Q 4 HOH A 188 708 708 HOH HOH . Q 4 HOH A 189 709 709 HOH HOH . Q 4 HOH A 190 710 710 HOH HOH . Q 4 HOH A 191 711 711 HOH HOH . Q 4 HOH A 192 712 712 HOH HOH . Q 4 HOH A 193 713 713 HOH HOH . Q 4 HOH A 194 714 714 HOH HOH . Q 4 HOH A 195 715 715 HOH HOH . Q 4 HOH A 196 716 716 HOH HOH . Q 4 HOH A 197 717 717 HOH HOH . Q 4 HOH A 198 718 718 HOH HOH . Q 4 HOH A 199 719 719 HOH HOH . Q 4 HOH A 200 720 720 HOH HOH . Q 4 HOH A 201 721 721 HOH HOH . Q 4 HOH A 202 722 722 HOH HOH . Q 4 HOH A 203 723 723 HOH HOH . Q 4 HOH A 204 724 724 HOH HOH . Q 4 HOH A 205 725 725 HOH HOH . Q 4 HOH A 206 726 726 HOH HOH . Q 4 HOH A 207 727 727 HOH HOH . Q 4 HOH A 208 728 728 HOH HOH . Q 4 HOH A 209 729 729 HOH HOH . Q 4 HOH A 210 732 732 HOH HOH . Q 4 HOH A 211 733 733 HOH HOH . Q 4 HOH A 212 734 734 HOH HOH . Q 4 HOH A 213 736 736 HOH HOH . Q 4 HOH A 214 737 737 HOH HOH . Q 4 HOH A 215 738 738 HOH HOH . Q 4 HOH A 216 739 739 HOH HOH . Q 4 HOH A 217 740 740 HOH HOH . Q 4 HOH A 218 741 741 HOH HOH . Q 4 HOH A 219 742 742 HOH HOH . Q 4 HOH A 220 743 743 HOH HOH . Q 4 HOH A 221 744 744 HOH HOH . Q 4 HOH A 222 745 745 HOH HOH . Q 4 HOH A 223 746 746 HOH HOH . Q 4 HOH A 224 747 747 HOH HOH . Q 4 HOH A 225 748 748 HOH HOH . Q 4 HOH A 226 749 749 HOH HOH . Q 4 HOH A 227 750 750 HOH HOH . Q 4 HOH A 228 751 751 HOH HOH . Q 4 HOH A 229 752 752 HOH HOH . Q 4 HOH A 230 753 753 HOH HOH . Q 4 HOH A 231 754 754 HOH HOH . Q 4 HOH A 232 756 756 HOH HOH . Q 4 HOH A 233 757 757 HOH HOH . Q 4 HOH A 234 758 758 HOH HOH . Q 4 HOH A 235 759 759 HOH HOH . Q 4 HOH A 236 760 760 HOH HOH . Q 4 HOH A 237 761 761 HOH HOH . Q 4 HOH A 238 764 764 HOH HOH . Q 4 HOH A 239 765 765 HOH HOH . Q 4 HOH A 240 766 766 HOH HOH . Q 4 HOH A 241 767 767 HOH HOH . Q 4 HOH A 242 768 768 HOH HOH . Q 4 HOH A 243 769 769 HOH HOH . Q 4 HOH A 244 770 770 HOH HOH . Q 4 HOH A 245 771 771 HOH HOH . Q 4 HOH A 246 772 772 HOH HOH . Q 4 HOH A 247 773 773 HOH HOH . Q 4 HOH A 248 774 774 HOH HOH . Q 4 HOH A 249 775 775 HOH HOH . Q 4 HOH A 250 779 779 HOH HOH . Q 4 HOH A 251 780 780 HOH HOH . Q 4 HOH A 252 781 781 HOH HOH . Q 4 HOH A 253 782 782 HOH HOH . Q 4 HOH A 254 783 783 HOH HOH . Q 4 HOH A 255 784 784 HOH HOH . Q 4 HOH A 256 785 785 HOH HOH . Q 4 HOH A 257 786 786 HOH HOH . Q 4 HOH A 258 787 787 HOH HOH . Q 4 HOH A 259 788 788 HOH HOH . Q 4 HOH A 260 789 789 HOH HOH . Q 4 HOH A 261 790 790 HOH HOH . Q 4 HOH A 262 791 791 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . O 3 63.757 41.846 59.086 1 106.58 ? S SO4 923 A 1 HETATM 2 O O1 SO4 . . . O 3 64.186 40.792 58.148 1 106.51 ? O1 SO4 923 A 1 HETATM 3 O O2 SO4 . . . O 3 62.797 42.74 58.408 1 106.18 ? O2 SO4 923 A 1 HETATM 4 O O3 SO4 . . . O 3 63.109 41.231 60.266 1 105.14 ? O3 SO4 923 A 1 HETATM 5 O O4 SO4 . . . O 3 64.95 42.622 59.495 1 106.46 ? O4 SO4 923 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #