data_3DDN
#
_model_server_result.job_id            XS1TjBgx0mHvE4EldYsnZQ 
_model_server_result.datetime_utc      '2025-01-03 04:13:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ddn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":531}' 
#
_entry.id    3DDN 
#
_exptl.entry_id    3DDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.087 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'L(+)-TARTARIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DDN 
_cell.length_a            165.601 
_cell.length_b            165.601 
_cell.length_c            218.299 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 82.8005 143.414673 36.383167 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             400 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              401 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             400 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              401 
_struct_conn.ptnr2_symmetry                 7_554 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.866 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C4 H6 O6' 
_chem_comp.formula_weight    150.087 
_chem_comp.id                TLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'L(+)-TARTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 TLA doub 302 n n 
O11 C1 TLA sing 303 n n 
O11 H11 TLA sing 304 n n 
C1 C2 TLA sing 305 n n 
C2 O2 TLA sing 306 n n 
C2 C3 TLA sing 307 n n 
C2 H2 TLA sing 308 n n 
O2 HA TLA sing 309 n n 
C3 O3 TLA sing 310 n n 
C3 C4 TLA sing 311 n n 
C3 H3 TLA sing 312 n n 
O3 HB TLA sing 313 n n 
C4 O4 TLA doub 314 n n 
C4 O41 TLA sing 315 n n 
O41 H41 TLA sing 316 n n 
#
_atom_sites.entry_id                     3DDN 
_atom_sites.fract_transf_matrix[1][1]    0.006039 
_atom_sites.fract_transf_matrix[1][2]    0.003486 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006973 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004581 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TLA A 1 530 530 TLA TLA . 
D 2 TLA B 1 530 530 TLA TLA . 
E 2 TLA B 1 531 531 TLA TLA . 
F 3 HPV B 1 600 600 HPV HPV . 
G 4 HOH A 1 700 700 HOH HOH . 
G 4 HOH A 2 701 701 HOH HOH . 
G 4 HOH A 3 702 702 HOH HOH . 
G 4 HOH A 4 703 703 HOH HOH . 
G 4 HOH A 5 704 704 HOH HOH . 
G 4 HOH A 6 705 705 HOH HOH . 
G 4 HOH A 7 706 706 HOH HOH . 
G 4 HOH A 8 707 707 HOH HOH . 
G 4 HOH A 9 708 708 HOH HOH . 
G 4 HOH A 10 709 709 HOH HOH . 
G 4 HOH A 11 710 710 HOH HOH . 
G 4 HOH A 12 711 711 HOH HOH . 
G 4 HOH A 13 712 712 HOH HOH . 
G 4 HOH A 14 713 713 HOH HOH . 
G 4 HOH A 15 714 714 HOH HOH . 
G 4 HOH A 16 715 715 HOH HOH . 
G 4 HOH A 17 716 716 HOH HOH . 
G 4 HOH A 18 717 717 HOH HOH . 
G 4 HOH A 19 718 718 HOH HOH . 
G 4 HOH A 20 719 719 HOH HOH . 
G 4 HOH A 21 720 720 HOH HOH . 
G 4 HOH A 22 721 721 HOH HOH . 
G 4 HOH A 23 722 722 HOH HOH . 
G 4 HOH A 24 723 723 HOH HOH . 
G 4 HOH A 25 724 724 HOH HOH . 
G 4 HOH A 26 725 725 HOH HOH . 
G 4 HOH A 27 726 726 HOH HOH . 
G 4 HOH A 28 727 727 HOH HOH . 
G 4 HOH A 29 728 728 HOH HOH . 
G 4 HOH A 30 729 729 HOH HOH . 
G 4 HOH A 31 730 730 HOH HOH . 
G 4 HOH A 32 731 731 HOH HOH . 
G 4 HOH A 33 732 732 HOH HOH . 
G 4 HOH A 34 733 733 HOH HOH . 
G 4 HOH A 35 734 734 HOH HOH . 
G 4 HOH A 36 735 735 HOH HOH . 
G 4 HOH A 37 736 736 HOH HOH . 
G 4 HOH A 38 737 737 HOH HOH . 
G 4 HOH A 39 738 738 HOH HOH . 
G 4 HOH A 40 739 739 HOH HOH . 
G 4 HOH A 41 740 740 HOH HOH . 
G 4 HOH A 42 741 741 HOH HOH . 
G 4 HOH A 43 742 742 HOH HOH . 
G 4 HOH A 44 743 743 HOH HOH . 
G 4 HOH A 45 744 744 HOH HOH . 
G 4 HOH A 46 745 745 HOH HOH . 
G 4 HOH A 47 746 746 HOH HOH . 
G 4 HOH A 48 747 747 HOH HOH . 
G 4 HOH A 49 748 748 HOH HOH . 
G 4 HOH A 50 749 749 HOH HOH . 
G 4 HOH A 51 750 750 HOH HOH . 
G 4 HOH A 52 751 751 HOH HOH . 
G 4 HOH A 53 752 752 HOH HOH . 
G 4 HOH A 54 753 753 HOH HOH . 
G 4 HOH A 55 754 754 HOH HOH . 
G 4 HOH A 56 755 755 HOH HOH . 
G 4 HOH A 57 756 756 HOH HOH . 
G 4 HOH A 58 757 757 HOH HOH . 
G 4 HOH A 59 758 758 HOH HOH . 
G 4 HOH A 60 759 759 HOH HOH . 
G 4 HOH A 61 760 760 HOH HOH . 
G 4 HOH A 62 761 761 HOH HOH . 
G 4 HOH A 63 762 762 HOH HOH . 
G 4 HOH A 64 763 763 HOH HOH . 
G 4 HOH A 65 764 764 HOH HOH . 
G 4 HOH A 66 765 765 HOH HOH . 
G 4 HOH A 67 766 766 HOH HOH . 
G 4 HOH A 68 767 767 HOH HOH . 
G 4 HOH A 69 768 768 HOH HOH . 
G 4 HOH A 70 769 769 HOH HOH . 
G 4 HOH A 71 770 770 HOH HOH . 
G 4 HOH A 72 771 771 HOH HOH . 
G 4 HOH A 73 772 772 HOH HOH . 
G 4 HOH A 74 773 773 HOH HOH . 
G 4 HOH A 75 774 774 HOH HOH . 
G 4 HOH A 76 775 775 HOH HOH . 
G 4 HOH A 77 776 776 HOH HOH . 
G 4 HOH A 78 777 777 HOH HOH . 
G 4 HOH A 79 778 778 HOH HOH . 
G 4 HOH A 80 779 779 HOH HOH . 
G 4 HOH A 81 780 780 HOH HOH . 
G 4 HOH A 82 781 781 HOH HOH . 
G 4 HOH A 83 782 782 HOH HOH . 
G 4 HOH A 84 783 783 HOH HOH . 
G 4 HOH A 85 784 784 HOH HOH . 
G 4 HOH A 86 785 785 HOH HOH . 
G 4 HOH A 87 786 786 HOH HOH . 
G 4 HOH A 88 787 787 HOH HOH . 
G 4 HOH A 89 788 788 HOH HOH . 
G 4 HOH A 90 789 789 HOH HOH . 
G 4 HOH A 91 790 790 HOH HOH . 
G 4 HOH A 92 791 791 HOH HOH . 
G 4 HOH A 93 792 792 HOH HOH . 
H 4 HOH B 1 700 700 HOH HOH . 
H 4 HOH B 2 701 701 HOH HOH . 
H 4 HOH B 3 702 702 HOH HOH . 
H 4 HOH B 4 703 703 HOH HOH . 
H 4 HOH B 5 704 704 HOH HOH . 
H 4 HOH B 6 705 705 HOH HOH . 
H 4 HOH B 7 706 706 HOH HOH . 
H 4 HOH B 8 707 707 HOH HOH . 
H 4 HOH B 9 708 708 HOH HOH . 
H 4 HOH B 10 709 709 HOH HOH . 
H 4 HOH B 11 710 710 HOH HOH . 
H 4 HOH B 12 711 711 HOH HOH . 
H 4 HOH B 13 712 712 HOH HOH . 
H 4 HOH B 14 713 713 HOH HOH . 
H 4 HOH B 15 714 714 HOH HOH . 
H 4 HOH B 16 715 715 HOH HOH . 
H 4 HOH B 17 716 716 HOH HOH . 
H 4 HOH B 18 717 717 HOH HOH . 
H 4 HOH B 19 718 718 HOH HOH . 
H 4 HOH B 20 719 719 HOH HOH . 
H 4 HOH B 21 720 720 HOH HOH . 
H 4 HOH B 22 721 721 HOH HOH . 
H 4 HOH B 23 722 722 HOH HOH . 
H 4 HOH B 24 723 723 HOH HOH . 
H 4 HOH B 25 724 724 HOH HOH . 
H 4 HOH B 26 725 725 HOH HOH . 
H 4 HOH B 27 726 726 HOH HOH . 
H 4 HOH B 28 727 727 HOH HOH . 
H 4 HOH B 29 728 728 HOH HOH . 
H 4 HOH B 30 729 729 HOH HOH . 
H 4 HOH B 31 730 730 HOH HOH . 
H 4 HOH B 32 731 731 HOH HOH . 
H 4 HOH B 33 732 732 HOH HOH . 
H 4 HOH B 34 733 733 HOH HOH . 
H 4 HOH B 35 734 734 HOH HOH . 
H 4 HOH B 36 735 735 HOH HOH . 
H 4 HOH B 37 736 736 HOH HOH . 
H 4 HOH B 38 737 737 HOH HOH . 
H 4 HOH B 39 738 738 HOH HOH . 
H 4 HOH B 40 739 739 HOH HOH . 
H 4 HOH B 41 740 740 HOH HOH . 
H 4 HOH B 42 741 741 HOH HOH . 
H 4 HOH B 43 742 742 HOH HOH . 
H 4 HOH B 44 743 743 HOH HOH . 
H 4 HOH B 45 744 744 HOH HOH . 
H 4 HOH B 46 745 745 HOH HOH . 
H 4 HOH B 47 746 746 HOH HOH . 
H 4 HOH B 48 747 747 HOH HOH . 
H 4 HOH B 49 748 748 HOH HOH . 
H 4 HOH B 50 749 749 HOH HOH . 
H 4 HOH B 51 750 750 HOH HOH . 
H 4 HOH B 52 751 751 HOH HOH . 
H 4 HOH B 53 752 752 HOH HOH . 
H 4 HOH B 54 753 753 HOH HOH . 
H 4 HOH B 55 754 754 HOH HOH . 
H 4 HOH B 56 755 755 HOH HOH . 
H 4 HOH B 57 756 756 HOH HOH . 
H 4 HOH B 58 757 757 HOH HOH . 
H 4 HOH B 59 758 758 HOH HOH . 
H 4 HOH B 60 759 759 HOH HOH . 
H 4 HOH B 61 760 760 HOH HOH . 
H 4 HOH B 62 761 761 HOH HOH . 
H 4 HOH B 63 762 762 HOH HOH . 
H 4 HOH B 64 763 763 HOH HOH . 
H 4 HOH B 65 764 764 HOH HOH . 
H 4 HOH B 66 765 765 HOH HOH . 
H 4 HOH B 67 766 766 HOH HOH . 
H 4 HOH B 68 767 767 HOH HOH . 
H 4 HOH B 69 768 768 HOH HOH . 
H 4 HOH B 70 769 769 HOH HOH . 
H 4 HOH B 71 770 770 HOH HOH . 
H 4 HOH B 72 771 771 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 TLA . . . E 2 35.281 63.418 -34.389 0.5 22.18 ? O1 TLA 531 B 1 
HETATM 2 O O11 TLA . . . E 2 33.377 62.689 -35.278 0.5 26.7 ? O11 TLA 531 B 1 
HETATM 3 C C1 TLA . . . E 2 34.695 62.873 -35.317 0.5 27.81 ? C1 TLA 531 B 1 
HETATM 4 C C2 TLA . . . E 2 35.451 62.399 -36.516 0.5 33.6 ? C2 TLA 531 B 1 
HETATM 5 O O2 TLA . . . E 2 34.549 62.003 -37.542 0.5 40.03 ? O2 TLA 531 B 1 
HETATM 6 C C3 TLA . . . E 2 36.274 61.184 -36.135 0.5 33.15 ? C3 TLA 531 B 1 
HETATM 7 O O3 TLA . . . E 2 35.44 60.253 -35.457 0.5 34.25 ? O3 TLA 531 B 1 
HETATM 8 C C4 TLA . . . E 2 36.821 60.616 -37.408 0.5 31 ? C4 TLA 531 B 1 
HETATM 9 O O4 TLA . . . E 2 37.199 61.395 -38.275 0.5 36.79 ? O4 TLA 531 B 1 
HETATM 10 O O41 TLA . . . E 2 36.882 59.293 -37.602 0.5 33.92 ? O41 TLA 531 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           10 
#