data_3DEE
#
_model_server_result.job_id            F84KSeljp3hMGWJQaHBmuw 
_model_server_result.datetime_utc      '2025-07-07 16:11:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dee 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":251}' 
#
_entry.id    3DEE 
#
_exptl.entry_id    3DEE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.8 
_cell.angle_gamma         90 
_cell.entry_id            3DEE 
_cell.length_a            106.522 
_cell.length_b            31.879 
_cell.length_c            86.369 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DEE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -37.590475 0 77.759632 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 104 A LEU 103 1_555 A N MSE 105 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 105 A MSE 104 1_555 A N ASP 106 A ASP 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 A C VAL 169 A VAL 168 1_555 A N MSE 170 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 170 A MSE 169 1_555 A N TYR 171 A TYR 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 A C ASP 178 A ASP 177 1_555 A N MSE 179 A MSE 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 179 A MSE 178 1_555 A N MSE 180 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale7 A C MSE 180 A MSE 179 1_555 A N LEU 181 A LEU 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale8 A C ILE 184 A ILE 183 1_555 A N MSE 185 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C MSE 185 A MSE 184 1_555 A N GLY 186 A GLY 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 A C PHE 202 A PHE 201 1_555 A N MSE 203 A MSE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 A C MSE 203 A MSE 202 1_555 A N PRO 204 A PRO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     3DEE 
_atom_sites.fract_transf_matrix[1][1]    0.009388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004539 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01286 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 249 1 CL CL . 
C 2 CL A 1 250 2 CL CL . 
D 3 IMD A 1 251 3 IMD IMD . 
E 4 HOH A 1 252 4 HOH HOH . 
E 4 HOH A 2 253 5 HOH HOH . 
E 4 HOH A 3 254 6 HOH HOH . 
E 4 HOH A 4 255 7 HOH HOH . 
E 4 HOH A 5 256 8 HOH HOH . 
E 4 HOH A 6 257 9 HOH HOH . 
E 4 HOH A 7 258 10 HOH HOH . 
E 4 HOH A 8 259 11 HOH HOH . 
E 4 HOH A 9 260 12 HOH HOH . 
E 4 HOH A 10 261 13 HOH HOH . 
E 4 HOH A 11 262 14 HOH HOH . 
E 4 HOH A 12 263 15 HOH HOH . 
E 4 HOH A 13 264 16 HOH HOH . 
E 4 HOH A 14 265 17 HOH HOH . 
E 4 HOH A 15 266 18 HOH HOH . 
E 4 HOH A 16 267 19 HOH HOH . 
E 4 HOH A 17 268 20 HOH HOH . 
E 4 HOH A 18 269 21 HOH HOH . 
E 4 HOH A 19 270 22 HOH HOH . 
E 4 HOH A 20 271 23 HOH HOH . 
E 4 HOH A 21 272 24 HOH HOH . 
E 4 HOH A 22 273 25 HOH HOH . 
E 4 HOH A 23 274 26 HOH HOH . 
E 4 HOH A 24 275 27 HOH HOH . 
E 4 HOH A 25 276 28 HOH HOH . 
E 4 HOH A 26 277 29 HOH HOH . 
E 4 HOH A 27 278 30 HOH HOH . 
E 4 HOH A 28 279 31 HOH HOH . 
E 4 HOH A 29 280 32 HOH HOH . 
E 4 HOH A 30 281 33 HOH HOH . 
E 4 HOH A 31 282 34 HOH HOH . 
E 4 HOH A 32 283 35 HOH HOH . 
E 4 HOH A 33 284 36 HOH HOH . 
E 4 HOH A 34 285 37 HOH HOH . 
E 4 HOH A 35 286 38 HOH HOH . 
E 4 HOH A 36 287 39 HOH HOH . 
E 4 HOH A 37 288 40 HOH HOH . 
E 4 HOH A 38 289 41 HOH HOH . 
E 4 HOH A 39 290 42 HOH HOH . 
E 4 HOH A 40 291 43 HOH HOH . 
E 4 HOH A 41 292 44 HOH HOH . 
E 4 HOH A 42 293 45 HOH HOH . 
E 4 HOH A 43 294 46 HOH HOH . 
E 4 HOH A 44 295 47 HOH HOH . 
E 4 HOH A 45 296 48 HOH HOH . 
E 4 HOH A 46 297 49 HOH HOH . 
E 4 HOH A 47 298 50 HOH HOH . 
E 4 HOH A 48 299 51 HOH HOH . 
E 4 HOH A 49 300 52 HOH HOH . 
E 4 HOH A 50 301 53 HOH HOH . 
E 4 HOH A 51 302 54 HOH HOH . 
E 4 HOH A 52 303 55 HOH HOH . 
E 4 HOH A 53 304 56 HOH HOH . 
E 4 HOH A 54 305 57 HOH HOH . 
E 4 HOH A 55 306 58 HOH HOH . 
E 4 HOH A 56 307 59 HOH HOH . 
E 4 HOH A 57 308 60 HOH HOH . 
E 4 HOH A 58 309 61 HOH HOH . 
E 4 HOH A 59 310 62 HOH HOH . 
E 4 HOH A 60 311 63 HOH HOH . 
E 4 HOH A 61 312 64 HOH HOH . 
E 4 HOH A 62 313 65 HOH HOH . 
E 4 HOH A 63 314 66 HOH HOH . 
E 4 HOH A 64 315 67 HOH HOH . 
E 4 HOH A 65 316 68 HOH HOH . 
E 4 HOH A 66 317 69 HOH HOH . 
E 4 HOH A 67 318 70 HOH HOH . 
E 4 HOH A 68 319 71 HOH HOH . 
E 4 HOH A 69 320 72 HOH HOH . 
E 4 HOH A 70 321 73 HOH HOH . 
E 4 HOH A 71 322 74 HOH HOH . 
E 4 HOH A 72 323 75 HOH HOH . 
E 4 HOH A 73 324 76 HOH HOH . 
E 4 HOH A 74 325 77 HOH HOH . 
E 4 HOH A 75 326 78 HOH HOH . 
E 4 HOH A 76 327 79 HOH HOH . 
E 4 HOH A 77 328 80 HOH HOH . 
E 4 HOH A 78 329 81 HOH HOH . 
E 4 HOH A 79 330 82 HOH HOH . 
E 4 HOH A 80 331 83 HOH HOH . 
E 4 HOH A 81 332 84 HOH HOH . 
E 4 HOH A 82 333 85 HOH HOH . 
E 4 HOH A 83 334 86 HOH HOH . 
E 4 HOH A 84 335 87 HOH HOH . 
E 4 HOH A 85 336 88 HOH HOH . 
E 4 HOH A 86 337 89 HOH HOH . 
E 4 HOH A 87 338 90 HOH HOH . 
E 4 HOH A 88 339 91 HOH HOH . 
E 4 HOH A 89 340 92 HOH HOH . 
E 4 HOH A 90 341 93 HOH HOH . 
E 4 HOH A 91 342 94 HOH HOH . 
E 4 HOH A 92 343 95 HOH HOH . 
E 4 HOH A 93 344 96 HOH HOH . 
E 4 HOH A 94 345 97 HOH HOH . 
E 4 HOH A 95 346 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . D 3 -16.516 10.836 9.695 1 56.32 ? N1 IMD 251 A 1 
HETATM 2 C C2 IMD . . . D 3 -16.08 12.035 10.155 1 56.28 ? C2 IMD 251 A 1 
HETATM 3 N N3 IMD . . . D 3 -16.81 13.022 9.583 1 56.36 ? N3 IMD 251 A 1 
HETATM 4 C C4 IMD . . . D 3 -17.714 12.437 8.758 1 56.7 ? C4 IMD 251 A 1 
HETATM 5 C C5 IMD . . . D 3 -17.533 11.057 8.829 1 56.59 ? C5 IMD 251 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#