data_3DEV # _model_server_result.job_id U16HG3e4P652F_qAcRgneg _model_server_result.datetime_utc '2024-12-01 11:10:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":321}' # _entry.id 3DEV # _exptl.entry_id 3DEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DEV _cell.length_a 106.087 _cell.length_b 106.087 _cell.length_c 86.092 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ILE 8 A ILE 8 1_555 A N MSE 9 A MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C MSE 9 A MSE 9 1_555 A N GLN 10 A GLN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C THR 171 A THR 171 1_555 A N MSE 172 A MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale5 A C MSE 172 A MSE 172 1_555 A N GLU 173 A GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C LYS 191 A LYS 191 1_555 A N MSE 192 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 192 A MSE 192 1_555 A N SER 193 A SER 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C LEU 199 A LEU 199 1_555 A N MSE 200 A MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C MSE 200 A MSE 200 1_555 A N PRO 201 A PRO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale10 A C TRP 254 A TRP 254 1_555 A N MSE 255 A MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C MSE 255 A MSE 255 1_555 A N PHE 256 A PHE 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale12 B C MSE 1 B MSE 1 1_555 B N VAL 2 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ILE 8 B ILE 8 1_555 B N MSE 9 B MSE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 B C MSE 9 B MSE 9 1_555 B N GLN 10 B GLN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C THR 171 B THR 171 1_555 B N MSE 172 B MSE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale16 B C MSE 172 B MSE 172 1_555 B N GLU 173 B GLU 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 B C LYS 191 B LYS 191 1_555 B N MSE 192 B MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 B C MSE 192 B MSE 192 1_555 B N SER 193 B SER 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C LEU 199 B LEU 199 1_555 B N MSE 200 B MSE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 B C MSE 200 B MSE 200 1_555 B N PRO 201 B PRO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale21 B C TRP 254 B TRP 254 1_555 B N MSE 255 B MSE 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale22 B C MSE 255 B MSE 255 1_555 B N PHE 256 B PHE 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OD1 ASP 29 A ASP 29 1_555 E MG MG . A MG 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3DEV _atom_sites.fract_transf_matrix[1][1] 0.009426 _atom_sites.fract_transf_matrix[1][2] 0.005442 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 321 1 SO4 SO4 . D 2 SO4 A 1 322 2 SO4 SO4 . E 3 MG A 1 323 1 MG MG . F 2 SO4 B 1 321 3 SO4 SO4 . G 3 MG B 1 322 2 MG MG . H 4 HOH A 1 324 1 HOH HOH . H 4 HOH A 2 325 2 HOH HOH . H 4 HOH A 3 326 5 HOH HOH . H 4 HOH A 4 327 23 HOH HOH . H 4 HOH A 5 328 24 HOH HOH . H 4 HOH A 6 329 25 HOH HOH . H 4 HOH A 7 330 26 HOH HOH . H 4 HOH A 8 331 27 HOH HOH . H 4 HOH A 9 332 30 HOH HOH . H 4 HOH A 10 333 31 HOH HOH . H 4 HOH A 11 334 32 HOH HOH . H 4 HOH A 12 335 33 HOH HOH . H 4 HOH A 13 336 34 HOH HOH . H 4 HOH A 14 337 35 HOH HOH . H 4 HOH A 15 338 36 HOH HOH . H 4 HOH A 16 339 37 HOH HOH . I 4 HOH B 1 323 3 HOH HOH . I 4 HOH B 2 324 4 HOH HOH . I 4 HOH B 3 325 6 HOH HOH . I 4 HOH B 4 326 7 HOH HOH . I 4 HOH B 5 327 8 HOH HOH . I 4 HOH B 6 328 9 HOH HOH . I 4 HOH B 7 329 10 HOH HOH . I 4 HOH B 8 330 11 HOH HOH . I 4 HOH B 9 331 12 HOH HOH . I 4 HOH B 10 332 13 HOH HOH . I 4 HOH B 11 333 14 HOH HOH . I 4 HOH B 12 334 15 HOH HOH . I 4 HOH B 13 335 16 HOH HOH . I 4 HOH B 14 336 17 HOH HOH . I 4 HOH B 15 337 18 HOH HOH . I 4 HOH B 16 338 19 HOH HOH . I 4 HOH B 17 339 20 HOH HOH . I 4 HOH B 18 340 21 HOH HOH . I 4 HOH B 19 341 22 HOH HOH . I 4 HOH B 20 342 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 2 49.321 6.814 67.43 1 102.11 ? S SO4 321 B 1 HETATM 2 O O1 SO4 . . . F 2 50.298 7.932 67.371 1 94.56 ? O1 SO4 321 B 1 HETATM 3 O O2 SO4 . . . F 2 49.926 5.602 66.825 1 86.84 ? O2 SO4 321 B 1 HETATM 4 O O3 SO4 . . . F 2 48.095 7.181 66.687 1 93.45 ? O3 SO4 321 B 1 HETATM 5 O O4 SO4 . . . F 2 48.965 6.55 68.854 1 98.29 ? O4 SO4 321 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #