data_3DFC # _model_server_result.job_id 2u4SiKQNtV2HsCGA-Wq6-A _model_server_result.datetime_utc '2024-10-11 19:16:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":296}' # _entry.id 3DFC # _exptl.entry_id 3DFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DFC _cell.length_a 46.688 _cell.length_b 62.444 _cell.length_c 88.602 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3DFC _atom_sites.fract_transf_matrix[1][1] 0.021419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP B 1 296 1 ANP ANP . C 3 HOH B 1 297 1 HOH HOH . C 3 HOH B 2 298 2 HOH HOH . C 3 HOH B 3 299 3 HOH HOH . C 3 HOH B 4 300 4 HOH HOH . C 3 HOH B 5 301 5 HOH HOH . C 3 HOH B 6 302 6 HOH HOH . C 3 HOH B 7 303 7 HOH HOH . C 3 HOH B 8 304 8 HOH HOH . C 3 HOH B 9 305 9 HOH HOH . C 3 HOH B 10 306 10 HOH HOH . C 3 HOH B 11 307 11 HOH HOH . C 3 HOH B 12 308 12 HOH HOH . C 3 HOH B 13 309 13 HOH HOH . C 3 HOH B 14 310 14 HOH HOH . C 3 HOH B 15 311 15 HOH HOH . C 3 HOH B 16 312 16 HOH HOH . C 3 HOH B 17 313 17 HOH HOH . C 3 HOH B 18 314 18 HOH HOH . C 3 HOH B 19 315 19 HOH HOH . C 3 HOH B 20 316 20 HOH HOH . C 3 HOH B 21 317 21 HOH HOH . C 3 HOH B 22 318 22 HOH HOH . C 3 HOH B 23 319 23 HOH HOH . C 3 HOH B 24 320 24 HOH HOH . C 3 HOH B 25 321 25 HOH HOH . C 3 HOH B 26 322 26 HOH HOH . C 3 HOH B 27 323 27 HOH HOH . C 3 HOH B 28 324 28 HOH HOH . C 3 HOH B 29 325 29 HOH HOH . C 3 HOH B 30 326 30 HOH HOH . C 3 HOH B 31 327 31 HOH HOH . C 3 HOH B 32 328 32 HOH HOH . C 3 HOH B 33 329 33 HOH HOH . C 3 HOH B 34 330 34 HOH HOH . C 3 HOH B 35 331 35 HOH HOH . C 3 HOH B 36 332 36 HOH HOH . C 3 HOH B 37 333 37 HOH HOH . C 3 HOH B 38 334 38 HOH HOH . C 3 HOH B 39 335 39 HOH HOH . C 3 HOH B 40 336 40 HOH HOH . C 3 HOH B 41 337 41 HOH HOH . C 3 HOH B 42 338 42 HOH HOH . C 3 HOH B 43 339 43 HOH HOH . C 3 HOH B 44 340 44 HOH HOH . C 3 HOH B 45 341 45 HOH HOH . C 3 HOH B 46 342 46 HOH HOH . C 3 HOH B 47 343 47 HOH HOH . C 3 HOH B 48 344 48 HOH HOH . C 3 HOH B 49 345 49 HOH HOH . C 3 HOH B 50 346 50 HOH HOH . C 3 HOH B 51 347 51 HOH HOH . C 3 HOH B 52 348 52 HOH HOH . C 3 HOH B 53 349 53 HOH HOH . C 3 HOH B 54 350 54 HOH HOH . C 3 HOH B 55 351 55 HOH HOH . C 3 HOH B 56 352 56 HOH HOH . C 3 HOH B 57 353 57 HOH HOH . C 3 HOH B 58 354 58 HOH HOH . C 3 HOH B 59 355 59 HOH HOH . C 3 HOH B 60 356 60 HOH HOH . C 3 HOH B 61 357 61 HOH HOH . C 3 HOH B 62 358 62 HOH HOH . C 3 HOH B 63 359 63 HOH HOH . C 3 HOH B 64 360 64 HOH HOH . C 3 HOH B 65 361 65 HOH HOH . C 3 HOH B 66 362 66 HOH HOH . C 3 HOH B 67 363 67 HOH HOH . C 3 HOH B 68 364 68 HOH HOH . C 3 HOH B 69 365 69 HOH HOH . C 3 HOH B 70 366 70 HOH HOH . C 3 HOH B 71 367 71 HOH HOH . C 3 HOH B 72 368 72 HOH HOH . C 3 HOH B 73 369 73 HOH HOH . C 3 HOH B 74 370 74 HOH HOH . C 3 HOH B 75 371 75 HOH HOH . C 3 HOH B 76 372 76 HOH HOH . C 3 HOH B 77 373 77 HOH HOH . C 3 HOH B 78 374 78 HOH HOH . C 3 HOH B 79 375 79 HOH HOH . C 3 HOH B 80 376 80 HOH HOH . C 3 HOH B 81 377 81 HOH HOH . C 3 HOH B 82 378 82 HOH HOH . C 3 HOH B 83 379 83 HOH HOH . C 3 HOH B 84 380 84 HOH HOH . C 3 HOH B 85 381 85 HOH HOH . C 3 HOH B 86 382 86 HOH HOH . C 3 HOH B 87 383 87 HOH HOH . C 3 HOH B 88 384 88 HOH HOH . C 3 HOH B 89 385 89 HOH HOH . C 3 HOH B 90 386 90 HOH HOH . C 3 HOH B 91 387 91 HOH HOH . C 3 HOH B 92 388 92 HOH HOH . C 3 HOH B 93 389 93 HOH HOH . C 3 HOH B 94 390 94 HOH HOH . C 3 HOH B 95 391 95 HOH HOH . C 3 HOH B 96 392 96 HOH HOH . C 3 HOH B 97 393 97 HOH HOH . C 3 HOH B 98 394 98 HOH HOH . C 3 HOH B 99 395 99 HOH HOH . C 3 HOH B 100 396 100 HOH HOH . C 3 HOH B 101 397 101 HOH HOH . C 3 HOH B 102 398 102 HOH HOH . C 3 HOH B 103 399 103 HOH HOH . C 3 HOH B 104 400 104 HOH HOH . C 3 HOH B 105 401 105 HOH HOH . C 3 HOH B 106 402 106 HOH HOH . C 3 HOH B 107 403 107 HOH HOH . C 3 HOH B 108 404 108 HOH HOH . C 3 HOH B 109 405 109 HOH HOH . C 3 HOH B 110 406 110 HOH HOH . C 3 HOH B 111 407 111 HOH HOH . C 3 HOH B 112 408 112 HOH HOH . C 3 HOH B 113 409 113 HOH HOH . C 3 HOH B 114 410 114 HOH HOH . C 3 HOH B 115 411 115 HOH HOH . C 3 HOH B 116 412 116 HOH HOH . C 3 HOH B 117 413 118 HOH HOH . C 3 HOH B 118 414 119 HOH HOH . C 3 HOH B 119 415 120 HOH HOH . C 3 HOH B 120 416 121 HOH HOH . C 3 HOH B 121 417 122 HOH HOH . C 3 HOH B 122 418 123 HOH HOH . C 3 HOH B 123 419 124 HOH HOH . C 3 HOH B 124 420 125 HOH HOH . C 3 HOH B 125 421 126 HOH HOH . C 3 HOH B 126 422 127 HOH HOH . C 3 HOH B 127 423 128 HOH HOH . C 3 HOH B 128 424 129 HOH HOH . C 3 HOH B 129 425 130 HOH HOH . C 3 HOH B 130 426 131 HOH HOH . C 3 HOH B 131 427 132 HOH HOH . C 3 HOH B 132 428 133 HOH HOH . C 3 HOH B 133 429 134 HOH HOH . C 3 HOH B 134 430 135 HOH HOH . C 3 HOH B 135 431 136 HOH HOH . C 3 HOH B 136 432 137 HOH HOH . C 3 HOH B 137 433 138 HOH HOH . C 3 HOH B 138 434 139 HOH HOH . C 3 HOH B 139 435 140 HOH HOH . C 3 HOH B 140 436 141 HOH HOH . C 3 HOH B 141 437 142 HOH HOH . C 3 HOH B 142 438 143 HOH HOH . C 3 HOH B 143 439 144 HOH HOH . C 3 HOH B 144 440 145 HOH HOH . C 3 HOH B 145 441 146 HOH HOH . C 3 HOH B 146 442 147 HOH HOH . C 3 HOH B 147 443 148 HOH HOH . C 3 HOH B 148 444 149 HOH HOH . C 3 HOH B 149 445 150 HOH HOH . C 3 HOH B 150 446 151 HOH HOH . C 3 HOH B 151 447 152 HOH HOH . C 3 HOH B 152 448 153 HOH HOH . C 3 HOH B 153 449 154 HOH HOH . C 3 HOH B 154 450 155 HOH HOH . C 3 HOH B 155 451 156 HOH HOH . C 3 HOH B 156 452 157 HOH HOH . C 3 HOH B 157 453 158 HOH HOH . C 3 HOH B 158 454 159 HOH HOH . C 3 HOH B 159 455 160 HOH HOH . C 3 HOH B 160 456 161 HOH HOH . C 3 HOH B 161 457 162 HOH HOH . C 3 HOH B 162 458 163 HOH HOH . C 3 HOH B 163 459 164 HOH HOH . C 3 HOH B 164 460 165 HOH HOH . C 3 HOH B 165 461 166 HOH HOH . C 3 HOH B 166 462 167 HOH HOH . C 3 HOH B 167 463 168 HOH HOH . C 3 HOH B 168 464 169 HOH HOH . C 3 HOH B 169 465 170 HOH HOH . C 3 HOH B 170 466 171 HOH HOH . C 3 HOH B 171 467 172 HOH HOH . C 3 HOH B 172 468 173 HOH HOH . C 3 HOH B 173 469 174 HOH HOH . C 3 HOH B 174 470 175 HOH HOH . C 3 HOH B 175 471 176 HOH HOH . C 3 HOH B 176 472 177 HOH HOH . C 3 HOH B 177 473 178 HOH HOH . C 3 HOH B 178 474 179 HOH HOH . C 3 HOH B 179 475 180 HOH HOH . C 3 HOH B 180 476 181 HOH HOH . C 3 HOH B 181 477 182 HOH HOH . C 3 HOH B 182 478 184 HOH HOH . C 3 HOH B 183 479 185 HOH HOH . C 3 HOH B 184 480 186 HOH HOH . C 3 HOH B 185 481 187 HOH HOH . C 3 HOH B 186 482 188 HOH HOH . C 3 HOH B 187 483 189 HOH HOH . C 3 HOH B 188 484 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 16.277 -1.567 12.879 1 38.8 ? PG ANP 296 B 1 HETATM 2 O O1G ANP . . . B 2 15.996 -3.042 13.176 1 35.79 ? O1G ANP 296 B 1 HETATM 3 O O2G ANP . . . B 2 17.588 -1.08 13.456 1 38.96 ? O2G ANP 296 B 1 HETATM 4 O O3G ANP . . . B 2 15.084 -0.656 13.076 1 34.68 ? O3G ANP 296 B 1 HETATM 5 P PB ANP . . . B 2 17.849 -1.984 10.351 1 27.72 ? PB ANP 296 B 1 HETATM 6 O O1B ANP . . . B 2 17.507 -1.873 8.888 1 30.32 ? O1B ANP 296 B 1 HETATM 7 O O2B ANP . . . B 2 18.115 -3.378 10.821 1 26.02 ? O2B ANP 296 B 1 HETATM 8 N N3B ANP . . . B 2 16.534 -1.303 11.193 1 32.03 ? N3B ANP 296 B 1 HETATM 9 P PA ANP . . . B 2 19.56 0.416 10.841 1 19.64 ? PA ANP 296 B 1 HETATM 10 O O1A ANP . . . B 2 19.568 1.272 9.623 1 19.15 ? O1A ANP 296 B 1 HETATM 11 O O2A ANP . . . B 2 18.842 0.872 12.069 1 20.33 ? O2A ANP 296 B 1 HETATM 12 O O3A ANP . . . B 2 19.247 -1.14 10.515 1 23.08 ? O3A ANP 296 B 1 HETATM 13 O O5' ANP . . . B 2 21.076 0.323 11.285 1 18.41 ? O5' ANP 296 B 1 HETATM 14 C C5' ANP . . . B 2 21.462 -0.502 12.392 1 20.92 ? C5' ANP 296 B 1 HETATM 15 C C4' ANP . . . B 2 22.447 0.236 13.309 1 22.73 ? C4' ANP 296 B 1 HETATM 16 O O4' ANP . . . B 2 23.631 0.556 12.563 1 21.64 ? O4' ANP 296 B 1 HETATM 17 C C3' ANP . . . B 2 21.959 1.573 13.84 1 24.54 ? C3' ANP 296 B 1 HETATM 18 O O3' ANP . . . B 2 21.15 1.515 15.038 1 25.79 ? O3' ANP 296 B 1 HETATM 19 C C2' ANP . . . B 2 23.247 2.366 14.052 1 22.57 ? C2' ANP 296 B 1 HETATM 20 O O2' ANP . . . B 2 23.879 1.968 15.289 1 24.25 ? O2' ANP 296 B 1 HETATM 21 C C1' ANP . . . B 2 24.135 1.866 12.932 1 18.7 ? C1' ANP 296 B 1 HETATM 22 N N9 ANP . . . B 2 24.038 2.764 11.752 1 17.54 ? N9 ANP 296 B 1 HETATM 23 C C8 ANP . . . B 2 23.049 2.766 10.801 1 17.61 ? C8 ANP 296 B 1 HETATM 24 N N7 ANP . . . B 2 23.289 3.706 9.844 1 14.32 ? N7 ANP 296 B 1 HETATM 25 C C5 ANP . . . B 2 24.418 4.294 10.189 1 14.84 ? C5 ANP 296 B 1 HETATM 26 C C6 ANP . . . B 2 25.185 5.376 9.583 1 18.81 ? C6 ANP 296 B 1 HETATM 27 N N6 ANP . . . B 2 24.713 5.961 8.419 1 15.46 ? N6 ANP 296 B 1 HETATM 28 N N1 ANP . . . B 2 26.311 5.748 10.229 1 18.77 ? N1 ANP 296 B 1 HETATM 29 C C2 ANP . . . B 2 26.725 5.177 11.377 1 17.63 ? C2 ANP 296 B 1 HETATM 30 N N3 ANP . . . B 2 26.066 4.161 11.976 1 16.38 ? N3 ANP 296 B 1 HETATM 31 C C4 ANP . . . B 2 24.898 3.719 11.441 1 16.94 ? C4 ANP 296 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #