data_3DFK # _model_server_result.job_id gDsm4XAdHjETgGQv_a_AUA _model_server_result.datetime_utc '2024-10-19 17:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dfk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3DFK # _exptl.entry_id 3DFK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.01 _cell.angle_gamma 90 _cell.entry_id 3DFK _cell.length_a 41.53 _cell.length_b 64.263 _cell.length_c 50.375 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DFK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 58 A ARG 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 59 A MSE 59 1_555 A N HIS 60 A HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C GLU 217 A GLU 217 1_555 A N MSE 218 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 218 A MSE 218 1_555 A N ARG 219 A ARG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLN 232 A GLN 232 1_555 A N MSE 233 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 233 A MSE 233 1_555 A N VAL 234 A VAL 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A ND1 HIS 16 A HIS 16 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc2 A OD2 ASP 19 A ASP 19 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc3 A NE2 HIS 164 A HIS 164 1_555 B ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc4 B ZN ZN . A ZN 300 1_555 D O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 B ZN ZN . A ZN 300 1_555 C O2 DKA . A DKA 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DFK _atom_sites.fract_transf_matrix[1][1] 0.024079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 300 300 ZN ZN . C 3 DKA A 1 400 400 DKA DKA . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 36 HOH HOH . D 4 HOH A 36 436 37 HOH HOH . D 4 HOH A 37 437 38 HOH HOH . D 4 HOH A 38 438 39 HOH HOH . D 4 HOH A 39 439 40 HOH HOH . D 4 HOH A 40 440 42 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 45 HOH HOH . D 4 HOH A 43 443 46 HOH HOH . D 4 HOH A 44 444 47 HOH HOH . D 4 HOH A 45 445 48 HOH HOH . D 4 HOH A 46 446 49 HOH HOH . D 4 HOH A 47 447 50 HOH HOH . D 4 HOH A 48 448 51 HOH HOH . D 4 HOH A 49 449 52 HOH HOH . D 4 HOH A 50 450 53 HOH HOH . D 4 HOH A 51 451 54 HOH HOH . D 4 HOH A 52 452 55 HOH HOH . D 4 HOH A 53 453 56 HOH HOH . D 4 HOH A 54 454 57 HOH HOH . D 4 HOH A 55 455 58 HOH HOH . D 4 HOH A 56 456 59 HOH HOH . D 4 HOH A 57 457 60 HOH HOH . D 4 HOH A 58 458 61 HOH HOH . D 4 HOH A 59 459 62 HOH HOH . D 4 HOH A 60 460 63 HOH HOH . D 4 HOH A 61 461 64 HOH HOH . D 4 HOH A 62 462 65 HOH HOH . D 4 HOH A 63 463 66 HOH HOH . D 4 HOH A 64 464 67 HOH HOH . D 4 HOH A 65 465 68 HOH HOH . D 4 HOH A 66 466 69 HOH HOH . D 4 HOH A 67 467 70 HOH HOH . D 4 HOH A 68 468 71 HOH HOH . D 4 HOH A 69 469 72 HOH HOH . D 4 HOH A 70 470 73 HOH HOH . D 4 HOH A 71 471 75 HOH HOH . D 4 HOH A 72 472 76 HOH HOH . D 4 HOH A 73 473 77 HOH HOH . D 4 HOH A 74 474 78 HOH HOH . D 4 HOH A 75 475 79 HOH HOH . D 4 HOH A 76 476 80 HOH HOH . D 4 HOH A 77 477 82 HOH HOH . D 4 HOH A 78 478 83 HOH HOH . D 4 HOH A 79 479 84 HOH HOH . D 4 HOH A 80 480 85 HOH HOH . D 4 HOH A 81 481 86 HOH HOH . D 4 HOH A 82 482 87 HOH HOH . D 4 HOH A 83 483 88 HOH HOH . D 4 HOH A 84 484 89 HOH HOH . D 4 HOH A 85 485 90 HOH HOH . D 4 HOH A 86 486 91 HOH HOH . D 4 HOH A 87 487 92 HOH HOH . D 4 HOH A 88 488 93 HOH HOH . D 4 HOH A 89 489 94 HOH HOH . D 4 HOH A 90 490 95 HOH HOH . D 4 HOH A 91 491 96 HOH HOH . D 4 HOH A 92 492 97 HOH HOH . D 4 HOH A 93 493 98 HOH HOH . D 4 HOH A 94 494 99 HOH HOH . D 4 HOH A 95 495 100 HOH HOH . D 4 HOH A 96 496 101 HOH HOH . D 4 HOH A 97 497 102 HOH HOH . D 4 HOH A 98 498 103 HOH HOH . D 4 HOH A 99 499 104 HOH HOH . D 4 HOH A 100 500 105 HOH HOH . D 4 HOH A 101 501 106 HOH HOH . D 4 HOH A 102 502 107 HOH HOH . D 4 HOH A 103 503 108 HOH HOH . D 4 HOH A 104 504 109 HOH HOH . D 4 HOH A 105 505 110 HOH HOH . D 4 HOH A 106 506 111 HOH HOH . D 4 HOH A 107 507 112 HOH HOH . D 4 HOH A 108 508 113 HOH HOH . D 4 HOH A 109 509 114 HOH HOH . D 4 HOH A 110 510 115 HOH HOH . D 4 HOH A 111 511 116 HOH HOH . D 4 HOH A 112 512 117 HOH HOH . D 4 HOH A 113 513 118 HOH HOH . D 4 HOH A 114 514 119 HOH HOH . D 4 HOH A 115 515 120 HOH HOH . D 4 HOH A 116 516 121 HOH HOH . D 4 HOH A 117 517 122 HOH HOH . D 4 HOH A 118 518 123 HOH HOH . D 4 HOH A 119 519 124 HOH HOH . D 4 HOH A 120 520 125 HOH HOH . D 4 HOH A 121 521 126 HOH HOH . D 4 HOH A 122 522 127 HOH HOH . D 4 HOH A 123 523 128 HOH HOH . D 4 HOH A 124 524 129 HOH HOH . D 4 HOH A 125 525 130 HOH HOH . D 4 HOH A 126 526 131 HOH HOH . D 4 HOH A 127 527 133 HOH HOH . D 4 HOH A 128 528 134 HOH HOH . D 4 HOH A 129 529 135 HOH HOH . D 4 HOH A 130 530 136 HOH HOH . D 4 HOH A 131 531 137 HOH HOH . D 4 HOH A 132 532 138 HOH HOH . D 4 HOH A 133 533 139 HOH HOH . D 4 HOH A 134 534 141 HOH HOH . D 4 HOH A 135 535 142 HOH HOH . D 4 HOH A 136 536 143 HOH HOH . D 4 HOH A 137 537 144 HOH HOH . D 4 HOH A 138 538 145 HOH HOH . D 4 HOH A 139 539 146 HOH HOH . D 4 HOH A 140 540 148 HOH HOH . D 4 HOH A 141 541 149 HOH HOH . D 4 HOH A 142 542 151 HOH HOH . D 4 HOH A 143 543 152 HOH HOH . D 4 HOH A 144 544 153 HOH HOH . D 4 HOH A 145 545 154 HOH HOH . D 4 HOH A 146 546 155 HOH HOH . D 4 HOH A 147 547 157 HOH HOH . D 4 HOH A 148 548 158 HOH HOH . D 4 HOH A 149 549 159 HOH HOH . D 4 HOH A 150 550 160 HOH HOH . D 4 HOH A 151 551 161 HOH HOH . D 4 HOH A 152 552 162 HOH HOH . D 4 HOH A 153 553 164 HOH HOH . D 4 HOH A 154 554 165 HOH HOH . D 4 HOH A 155 555 166 HOH HOH . D 4 HOH A 156 556 167 HOH HOH . D 4 HOH A 157 557 168 HOH HOH . D 4 HOH A 158 558 169 HOH HOH . D 4 HOH A 159 559 170 HOH HOH . D 4 HOH A 160 560 171 HOH HOH . D 4 HOH A 161 561 173 HOH HOH . D 4 HOH A 162 562 174 HOH HOH . D 4 HOH A 163 563 175 HOH HOH . D 4 HOH A 164 564 176 HOH HOH . D 4 HOH A 165 565 177 HOH HOH . D 4 HOH A 166 566 178 HOH HOH . D 4 HOH A 167 567 179 HOH HOH . D 4 HOH A 168 568 180 HOH HOH . D 4 HOH A 169 569 181 HOH HOH . D 4 HOH A 170 570 182 HOH HOH . D 4 HOH A 171 571 183 HOH HOH . D 4 HOH A 172 572 184 HOH HOH . D 4 HOH A 173 573 185 HOH HOH . D 4 HOH A 174 574 186 HOH HOH . D 4 HOH A 175 575 187 HOH HOH . D 4 HOH A 176 576 188 HOH HOH . D 4 HOH A 177 577 189 HOH HOH . D 4 HOH A 178 578 190 HOH HOH . D 4 HOH A 179 579 191 HOH HOH . D 4 HOH A 180 580 192 HOH HOH . D 4 HOH A 181 581 193 HOH HOH . D 4 HOH A 182 582 194 HOH HOH . D 4 HOH A 183 583 195 HOH HOH . D 4 HOH A 184 584 196 HOH HOH . D 4 HOH A 185 585 197 HOH HOH . D 4 HOH A 186 586 198 HOH HOH . D 4 HOH A 187 587 199 HOH HOH . D 4 HOH A 188 588 200 HOH HOH . D 4 HOH A 189 589 201 HOH HOH . D 4 HOH A 190 590 202 HOH HOH . D 4 HOH A 191 591 203 HOH HOH . D 4 HOH A 192 592 204 HOH HOH . D 4 HOH A 193 593 205 HOH HOH . D 4 HOH A 194 594 206 HOH HOH . D 4 HOH A 195 595 207 HOH HOH . D 4 HOH A 196 596 208 HOH HOH . D 4 HOH A 197 597 209 HOH HOH . D 4 HOH A 198 598 210 HOH HOH . D 4 HOH A 199 599 211 HOH HOH . D 4 HOH A 200 600 212 HOH HOH . D 4 HOH A 201 601 213 HOH HOH . D 4 HOH A 202 602 214 HOH HOH . D 4 HOH A 203 603 215 HOH HOH . D 4 HOH A 204 604 216 HOH HOH . D 4 HOH A 205 605 217 HOH HOH . D 4 HOH A 206 606 218 HOH HOH . D 4 HOH A 207 607 219 HOH HOH . D 4 HOH A 208 608 220 HOH HOH . D 4 HOH A 209 609 221 HOH HOH . D 4 HOH A 210 610 222 HOH HOH . D 4 HOH A 211 611 223 HOH HOH . D 4 HOH A 212 612 224 HOH HOH . D 4 HOH A 213 613 225 HOH HOH . D 4 HOH A 214 614 226 HOH HOH . D 4 HOH A 215 615 227 HOH HOH . D 4 HOH A 216 616 228 HOH HOH . D 4 HOH A 217 617 230 HOH HOH . D 4 HOH A 218 618 231 HOH HOH . D 4 HOH A 219 619 232 HOH HOH . D 4 HOH A 220 620 233 HOH HOH . D 4 HOH A 221 621 234 HOH HOH . D 4 HOH A 222 622 235 HOH HOH . D 4 HOH A 223 623 238 HOH HOH . D 4 HOH A 224 624 239 HOH HOH . D 4 HOH A 225 625 240 HOH HOH . D 4 HOH A 226 626 241 HOH HOH . D 4 HOH A 227 627 242 HOH HOH . D 4 HOH A 228 628 243 HOH HOH . D 4 HOH A 229 629 244 HOH HOH . D 4 HOH A 230 630 245 HOH HOH . D 4 HOH A 231 631 246 HOH HOH . D 4 HOH A 232 632 247 HOH HOH . D 4 HOH A 233 633 248 HOH HOH . D 4 HOH A 234 634 250 HOH HOH . D 4 HOH A 235 635 251 HOH HOH . D 4 HOH A 236 636 252 HOH HOH . D 4 HOH A 237 637 253 HOH HOH . D 4 HOH A 238 638 255 HOH HOH . D 4 HOH A 239 639 256 HOH HOH . D 4 HOH A 240 640 257 HOH HOH . D 4 HOH A 241 641 258 HOH HOH . D 4 HOH A 242 642 259 HOH HOH . D 4 HOH A 243 643 261 HOH HOH . D 4 HOH A 244 644 262 HOH HOH . D 4 HOH A 245 645 263 HOH HOH . D 4 HOH A 246 646 264 HOH HOH . D 4 HOH A 247 647 265 HOH HOH . D 4 HOH A 248 648 266 HOH HOH . D 4 HOH A 249 649 267 HOH HOH . D 4 HOH A 250 650 268 HOH HOH . D 4 HOH A 251 651 269 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.902 _atom_site.Cartn_y 18.064 _atom_site.Cartn_z 8.528 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 300 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #