data_3DFL # _model_server_result.job_id eslX9fKYBcG6rRY8mujkIg _model_server_result.datetime_utc '2024-10-13 19:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dfl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":308}' # _entry.id 3DFL # _exptl.entry_id 3DFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.176 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-carbamimidamidobenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DFL _cell.length_a 53.498 _cell.length_b 54.846 _cell.length_c 83.279 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 70 1_555 A SG CYS 42 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 124 A CYS 168 1_555 A SG CYS 200 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 157 A CYS 201 1_555 A SG CYS 179 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf4 A SG CYS 190 A CYS 234 1_555 A SG CYS 218 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A OG SER 194 A SER 238 1_555 B C6 GBS . A GBS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C8 H9 N3 O2' _chem_comp.formula_weight 179.176 _chem_comp.id GBS _chem_comp.mon_nstd_flag . _chem_comp.name '4-carbamimidamidobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nafamostat, bound form' # _atom_sites.entry_id 3DFL _atom_sites.fract_transf_matrix[1][1] 0.018692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GBS A 1 308 301 GBS GBS . C 3 HOH A 1 309 1 HOH HOH . C 3 HOH A 2 310 2 HOH HOH . C 3 HOH A 3 311 3 HOH HOH . C 3 HOH A 4 312 4 HOH HOH . C 3 HOH A 5 313 5 HOH HOH . C 3 HOH A 6 314 6 HOH HOH . C 3 HOH A 7 315 7 HOH HOH . C 3 HOH A 8 316 8 HOH HOH . C 3 HOH A 9 317 9 HOH HOH . C 3 HOH A 10 318 10 HOH HOH . C 3 HOH A 11 319 11 HOH HOH . C 3 HOH A 12 320 12 HOH HOH . C 3 HOH A 13 321 13 HOH HOH . C 3 HOH A 14 322 14 HOH HOH . C 3 HOH A 15 323 15 HOH HOH . C 3 HOH A 16 324 16 HOH HOH . C 3 HOH A 17 325 17 HOH HOH . C 3 HOH A 18 326 18 HOH HOH . C 3 HOH A 19 327 19 HOH HOH . C 3 HOH A 20 328 20 HOH HOH . C 3 HOH A 21 329 21 HOH HOH . C 3 HOH A 22 330 22 HOH HOH . C 3 HOH A 23 331 23 HOH HOH . C 3 HOH A 24 332 24 HOH HOH . C 3 HOH A 25 333 25 HOH HOH . C 3 HOH A 26 334 26 HOH HOH . C 3 HOH A 27 335 27 HOH HOH . C 3 HOH A 28 336 28 HOH HOH . C 3 HOH A 29 337 29 HOH HOH . C 3 HOH A 30 338 30 HOH HOH . C 3 HOH A 31 339 31 HOH HOH . C 3 HOH A 32 340 32 HOH HOH . C 3 HOH A 33 341 33 HOH HOH . C 3 HOH A 34 342 34 HOH HOH . C 3 HOH A 35 343 35 HOH HOH . C 3 HOH A 36 344 36 HOH HOH . C 3 HOH A 37 345 37 HOH HOH . C 3 HOH A 38 346 38 HOH HOH . C 3 HOH A 39 347 39 HOH HOH . C 3 HOH A 40 348 40 HOH HOH . C 3 HOH A 41 349 41 HOH HOH . C 3 HOH A 42 350 42 HOH HOH . C 3 HOH A 43 351 43 HOH HOH . C 3 HOH A 44 352 44 HOH HOH . C 3 HOH A 45 353 45 HOH HOH . C 3 HOH A 46 354 46 HOH HOH . C 3 HOH A 47 355 47 HOH HOH . C 3 HOH A 48 356 48 HOH HOH . C 3 HOH A 49 357 49 HOH HOH . C 3 HOH A 50 358 50 HOH HOH . C 3 HOH A 51 359 51 HOH HOH . C 3 HOH A 52 360 52 HOH HOH . C 3 HOH A 53 361 53 HOH HOH . C 3 HOH A 54 362 54 HOH HOH . C 3 HOH A 55 363 55 HOH HOH . C 3 HOH A 56 364 56 HOH HOH . C 3 HOH A 57 365 57 HOH HOH . C 3 HOH A 58 366 58 HOH HOH . C 3 HOH A 59 367 59 HOH HOH . C 3 HOH A 60 368 60 HOH HOH . C 3 HOH A 61 369 61 HOH HOH . C 3 HOH A 62 370 62 HOH HOH . C 3 HOH A 63 371 63 HOH HOH . C 3 HOH A 64 372 64 HOH HOH . C 3 HOH A 65 373 65 HOH HOH . C 3 HOH A 66 374 66 HOH HOH . C 3 HOH A 67 375 67 HOH HOH . C 3 HOH A 68 376 68 HOH HOH . C 3 HOH A 69 377 69 HOH HOH . C 3 HOH A 70 378 70 HOH HOH . C 3 HOH A 71 379 71 HOH HOH . C 3 HOH A 72 380 72 HOH HOH . C 3 HOH A 73 381 73 HOH HOH . C 3 HOH A 74 382 74 HOH HOH . C 3 HOH A 75 383 75 HOH HOH . C 3 HOH A 76 384 76 HOH HOH . C 3 HOH A 77 385 77 HOH HOH . C 3 HOH A 78 386 78 HOH HOH . C 3 HOH A 79 387 79 HOH HOH . C 3 HOH A 80 388 80 HOH HOH . C 3 HOH A 81 389 81 HOH HOH . C 3 HOH A 82 390 82 HOH HOH . C 3 HOH A 83 391 83 HOH HOH . C 3 HOH A 84 392 84 HOH HOH . C 3 HOH A 85 393 85 HOH HOH . C 3 HOH A 86 394 86 HOH HOH . C 3 HOH A 87 395 87 HOH HOH . C 3 HOH A 88 396 88 HOH HOH . C 3 HOH A 89 397 89 HOH HOH . C 3 HOH A 90 398 90 HOH HOH . C 3 HOH A 91 399 91 HOH HOH . C 3 HOH A 92 400 92 HOH HOH . C 3 HOH A 93 401 93 HOH HOH . C 3 HOH A 94 402 94 HOH HOH . C 3 HOH A 95 403 95 HOH HOH . C 3 HOH A 96 404 96 HOH HOH . C 3 HOH A 97 405 97 HOH HOH . C 3 HOH A 98 406 98 HOH HOH . C 3 HOH A 99 407 99 HOH HOH . C 3 HOH A 100 408 100 HOH HOH . C 3 HOH A 101 409 101 HOH HOH . C 3 HOH A 102 410 102 HOH HOH . C 3 HOH A 103 411 103 HOH HOH . C 3 HOH A 104 412 104 HOH HOH . C 3 HOH A 105 413 105 HOH HOH . C 3 HOH A 106 414 106 HOH HOH . C 3 HOH A 107 415 107 HOH HOH . C 3 HOH A 108 416 108 HOH HOH . C 3 HOH A 109 417 109 HOH HOH . C 3 HOH A 110 418 110 HOH HOH . C 3 HOH A 111 419 111 HOH HOH . C 3 HOH A 112 420 112 HOH HOH . C 3 HOH A 113 421 113 HOH HOH . C 3 HOH A 114 422 114 HOH HOH . C 3 HOH A 115 423 115 HOH HOH . C 3 HOH A 116 424 116 HOH HOH . C 3 HOH A 117 425 117 HOH HOH . C 3 HOH A 118 426 118 HOH HOH . C 3 HOH A 119 427 119 HOH HOH . C 3 HOH A 120 428 120 HOH HOH . C 3 HOH A 121 429 121 HOH HOH . C 3 HOH A 122 430 122 HOH HOH . C 3 HOH A 123 431 123 HOH HOH . C 3 HOH A 124 432 124 HOH HOH . C 3 HOH A 125 433 125 HOH HOH . C 3 HOH A 126 434 126 HOH HOH . C 3 HOH A 127 435 127 HOH HOH . C 3 HOH A 128 436 128 HOH HOH . C 3 HOH A 129 437 129 HOH HOH . C 3 HOH A 130 438 130 HOH HOH . C 3 HOH A 131 439 131 HOH HOH . C 3 HOH A 132 440 132 HOH HOH . C 3 HOH A 133 441 133 HOH HOH . C 3 HOH A 134 442 134 HOH HOH . C 3 HOH A 135 443 135 HOH HOH . C 3 HOH A 136 444 136 HOH HOH . C 3 HOH A 137 445 137 HOH HOH . C 3 HOH A 138 446 138 HOH HOH . C 3 HOH A 139 447 139 HOH HOH . C 3 HOH A 140 448 140 HOH HOH . C 3 HOH A 141 449 141 HOH HOH . C 3 HOH A 142 450 142 HOH HOH . C 3 HOH A 143 451 143 HOH HOH . C 3 HOH A 144 452 144 HOH HOH . C 3 HOH A 145 453 145 HOH HOH . C 3 HOH A 146 454 146 HOH HOH . C 3 HOH A 147 455 147 HOH HOH . C 3 HOH A 148 456 148 HOH HOH . C 3 HOH A 149 457 149 HOH HOH . C 3 HOH A 150 458 150 HOH HOH . C 3 HOH A 151 459 151 HOH HOH . C 3 HOH A 152 460 152 HOH HOH . C 3 HOH A 153 461 153 HOH HOH . C 3 HOH A 154 462 154 HOH HOH . C 3 HOH A 155 463 155 HOH HOH . C 3 HOH A 156 464 156 HOH HOH . C 3 HOH A 157 465 157 HOH HOH . C 3 HOH A 158 466 158 HOH HOH . C 3 HOH A 159 467 159 HOH HOH . C 3 HOH A 160 468 160 HOH HOH . C 3 HOH A 161 469 161 HOH HOH . C 3 HOH A 162 470 162 HOH HOH . C 3 HOH A 163 471 163 HOH HOH . C 3 HOH A 164 472 164 HOH HOH . C 3 HOH A 165 473 165 HOH HOH . C 3 HOH A 166 474 166 HOH HOH . C 3 HOH A 167 475 167 HOH HOH . C 3 HOH A 168 476 168 HOH HOH . C 3 HOH A 169 477 169 HOH HOH . C 3 HOH A 170 478 170 HOH HOH . C 3 HOH A 171 479 171 HOH HOH . C 3 HOH A 172 480 172 HOH HOH . C 3 HOH A 173 481 173 HOH HOH . C 3 HOH A 174 482 174 HOH HOH . C 3 HOH A 175 483 175 HOH HOH . C 3 HOH A 176 484 176 HOH HOH . C 3 HOH A 177 485 177 HOH HOH . C 3 HOH A 178 486 178 HOH HOH . C 3 HOH A 179 487 179 HOH HOH . C 3 HOH A 180 488 180 HOH HOH . C 3 HOH A 181 489 181 HOH HOH . C 3 HOH A 182 490 182 HOH HOH . C 3 HOH A 183 491 183 HOH HOH . C 3 HOH A 184 492 184 HOH HOH . C 3 HOH A 185 493 185 HOH HOH . C 3 HOH A 186 494 186 HOH HOH . C 3 HOH A 187 495 187 HOH HOH . C 3 HOH A 188 496 188 HOH HOH . C 3 HOH A 189 497 189 HOH HOH . C 3 HOH A 190 498 190 HOH HOH . C 3 HOH A 191 499 191 HOH HOH . C 3 HOH A 192 500 192 HOH HOH . C 3 HOH A 193 501 193 HOH HOH . C 3 HOH A 194 502 194 HOH HOH . C 3 HOH A 195 503 195 HOH HOH . C 3 HOH A 196 504 196 HOH HOH . C 3 HOH A 197 505 197 HOH HOH . C 3 HOH A 198 506 198 HOH HOH . C 3 HOH A 199 507 199 HOH HOH . C 3 HOH A 200 508 200 HOH HOH . C 3 HOH A 201 509 201 HOH HOH . C 3 HOH A 202 510 202 HOH HOH . C 3 HOH A 203 511 203 HOH HOH . C 3 HOH A 204 512 204 HOH HOH . C 3 HOH A 205 513 205 HOH HOH . C 3 HOH A 206 514 206 HOH HOH . C 3 HOH A 207 515 207 HOH HOH . C 3 HOH A 208 516 208 HOH HOH . C 3 HOH A 209 517 209 HOH HOH . C 3 HOH A 210 518 210 HOH HOH . C 3 HOH A 211 519 211 HOH HOH . C 3 HOH A 212 520 212 HOH HOH . C 3 HOH A 213 521 213 HOH HOH . C 3 HOH A 214 522 214 HOH HOH . C 3 HOH A 215 523 215 HOH HOH . C 3 HOH A 216 524 216 HOH HOH . C 3 HOH A 217 525 217 HOH HOH . C 3 HOH A 218 526 218 HOH HOH . C 3 HOH A 219 527 219 HOH HOH . C 3 HOH A 220 528 220 HOH HOH . C 3 HOH A 221 529 221 HOH HOH . C 3 HOH A 222 530 222 HOH HOH . C 3 HOH A 223 531 223 HOH HOH . C 3 HOH A 224 532 224 HOH HOH . C 3 HOH A 225 533 225 HOH HOH . C 3 HOH A 226 534 226 HOH HOH . C 3 HOH A 227 535 227 HOH HOH . C 3 HOH A 228 536 228 HOH HOH . C 3 HOH A 229 537 229 HOH HOH . C 3 HOH A 230 538 230 HOH HOH . C 3 HOH A 231 539 231 HOH HOH . C 3 HOH A 232 540 232 HOH HOH . C 3 HOH A 233 541 233 HOH HOH . C 3 HOH A 234 542 234 HOH HOH . C 3 HOH A 235 543 235 HOH HOH . C 3 HOH A 236 544 236 HOH HOH . C 3 HOH A 237 545 237 HOH HOH . C 3 HOH A 238 546 238 HOH HOH . C 3 HOH A 239 547 239 HOH HOH . C 3 HOH A 240 548 240 HOH HOH . C 3 HOH A 241 549 241 HOH HOH . C 3 HOH A 242 550 242 HOH HOH . C 3 HOH A 243 551 243 HOH HOH . C 3 HOH A 244 552 244 HOH HOH . C 3 HOH A 245 553 245 HOH HOH . C 3 HOH A 246 554 246 HOH HOH . C 3 HOH A 247 555 247 HOH HOH . C 3 HOH A 248 556 248 HOH HOH . C 3 HOH A 249 557 249 HOH HOH . C 3 HOH A 250 558 250 HOH HOH . C 3 HOH A 251 559 251 HOH HOH . C 3 HOH A 252 560 252 HOH HOH . C 3 HOH A 253 561 253 HOH HOH . C 3 HOH A 254 562 254 HOH HOH . C 3 HOH A 255 563 255 HOH HOH . C 3 HOH A 256 564 256 HOH HOH . C 3 HOH A 257 565 257 HOH HOH . C 3 HOH A 258 566 258 HOH HOH . C 3 HOH A 259 567 259 HOH HOH . C 3 HOH A 260 568 260 HOH HOH . C 3 HOH A 261 569 261 HOH HOH . C 3 HOH A 262 570 262 HOH HOH . C 3 HOH A 263 571 263 HOH HOH . C 3 HOH A 264 572 264 HOH HOH . C 3 HOH A 265 573 265 HOH HOH . C 3 HOH A 266 574 266 HOH HOH . C 3 HOH A 267 575 267 HOH HOH . C 3 HOH A 268 576 268 HOH HOH . C 3 HOH A 269 577 269 HOH HOH . C 3 HOH A 270 578 270 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 GBS . . . B 2 -15.623 9.095 0.654 1 21.26 ? C2 GBS 308 A 1 HETATM 2 C C3 GBS . . . B 2 -14.991 7.842 0.599 1 20.93 ? C3 GBS 308 A 1 HETATM 3 C C4 GBS . . . B 2 -14.562 7.208 1.768 1 20.03 ? C4 GBS 308 A 1 HETATM 4 C C6 GBS . . . B 2 -14.312 7.173 4.281 1 20.02 ? C6 GBS 308 A 1 HETATM 5 C C1 GBS . . . B 2 -15.813 9.71 1.887 1 21.38 ? C1 GBS 308 A 1 HETATM 6 N N4 GBS . . . B 2 -16.758 9.847 -2.663 1 23.14 ? N4 GBS 308 A 1 HETATM 7 C C5 GBS . . . B 2 -14.76 7.83 3.004 1 20.88 ? C5 GBS 308 A 1 HETATM 8 C C18 GBS . . . B 2 -16.594 9.15 -1.533 1 23.67 ? C18 GBS 308 A 1 HETATM 9 O O GBS . . . B 2 -14.713 7.598 5.363 1 19.5 ? O GBS 308 A 1 HETATM 10 N N2 GBS . . . B 2 -16.05 9.744 -0.462 1 21.42 ? N2 GBS 308 A 1 HETATM 11 N N3 GBS . . . B 2 -16.966 7.94 -1.503 1 23.69 ? N3 GBS 308 A 1 HETATM 12 C C GBS . . . B 2 -15.39 9.077 3.058 1 21.45 ? C GBS 308 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #