data_3DFM # _model_server_result.job_id bqxSP4dxlb710PmHkZn51w _model_server_result.datetime_utc '2024-12-23 13:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 3DFM # _exptl.entry_id 3DFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.9 _cell.angle_gamma 90 _cell.entry_id 3DFM _cell.length_a 41.309 _cell.length_b 64.324 _cell.length_c 49.875 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 58 A ARG 58 1_555 A N MSE 59 A MSE 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 59 A MSE 59 1_555 A N HIS 60 A HIS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C GLU 217 A GLU 217 1_555 A N MSE 218 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 218 A MSE 218 1_555 A N ARG 219 A ARG 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C GLN 232 A GLN 232 1_555 A N MSE 233 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MSE 233 A MSE 233 1_555 A N VAL 234 A VAL 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A ND1 HIS 16 A HIS 16 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc2 A NE2 HIS 16 A HIS 16 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 A OD2 ASP 19 A ASP 19 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc4 A NE2 HIS 90 A HIS 90 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc5 A OD1 ASP 97 A ASP 97 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc6 A NE2 HIS 124 A HIS 124 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 A OD1 ASP 129 A ASP 129 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A OD2 ASP 163 A ASP 163 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? metalc ? metalc9 A NE2 HIS 164 A HIS 164 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc10 A OE2 GLU 186 A GLU 186 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc11 A NE2 HIS 250 A HIS 250 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc12 G O3 SO4 . A SO4 300 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc13 H O2 SO4 . A SO4 301 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc14 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc15 F ZN ZN . A ZN 405 1_555 I O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 3DFM _atom_sites.fract_transf_matrix[1][1] 0.024208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003789 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 401 ZN ZN . C 2 ZN A 1 402 402 ZN ZN . D 2 ZN A 1 403 403 ZN ZN . E 2 ZN A 1 404 404 ZN ZN . F 2 ZN A 1 405 405 ZN ZN . G 3 SO4 A 1 300 300 SO4 SO4 . H 3 SO4 A 1 301 301 SO4 SO4 . I 4 HOH A 1 406 2 HOH HOH . I 4 HOH A 2 407 3 HOH HOH . I 4 HOH A 3 408 4 HOH HOH . I 4 HOH A 4 409 5 HOH HOH . I 4 HOH A 5 410 6 HOH HOH . I 4 HOH A 6 411 7 HOH HOH . I 4 HOH A 7 412 8 HOH HOH . I 4 HOH A 8 413 9 HOH HOH . I 4 HOH A 9 414 10 HOH HOH . I 4 HOH A 10 415 11 HOH HOH . I 4 HOH A 11 416 12 HOH HOH . I 4 HOH A 12 417 13 HOH HOH . I 4 HOH A 13 418 14 HOH HOH . I 4 HOH A 14 419 15 HOH HOH . I 4 HOH A 15 420 16 HOH HOH . I 4 HOH A 16 421 17 HOH HOH . I 4 HOH A 17 422 18 HOH HOH . I 4 HOH A 18 423 20 HOH HOH . I 4 HOH A 19 424 22 HOH HOH . I 4 HOH A 20 425 23 HOH HOH . I 4 HOH A 21 426 24 HOH HOH . I 4 HOH A 22 427 25 HOH HOH . I 4 HOH A 23 428 26 HOH HOH . I 4 HOH A 24 429 27 HOH HOH . I 4 HOH A 25 430 28 HOH HOH . I 4 HOH A 26 431 29 HOH HOH . I 4 HOH A 27 432 30 HOH HOH . I 4 HOH A 28 433 31 HOH HOH . I 4 HOH A 29 434 32 HOH HOH . I 4 HOH A 30 435 33 HOH HOH . I 4 HOH A 31 436 34 HOH HOH . I 4 HOH A 32 437 35 HOH HOH . I 4 HOH A 33 438 36 HOH HOH . I 4 HOH A 34 439 37 HOH HOH . I 4 HOH A 35 440 38 HOH HOH . I 4 HOH A 36 441 39 HOH HOH . I 4 HOH A 37 442 40 HOH HOH . I 4 HOH A 38 443 41 HOH HOH . I 4 HOH A 39 444 42 HOH HOH . I 4 HOH A 40 445 43 HOH HOH . I 4 HOH A 41 446 45 HOH HOH . I 4 HOH A 42 447 47 HOH HOH . I 4 HOH A 43 448 48 HOH HOH . I 4 HOH A 44 449 49 HOH HOH . I 4 HOH A 45 450 50 HOH HOH . I 4 HOH A 46 451 52 HOH HOH . I 4 HOH A 47 452 53 HOH HOH . I 4 HOH A 48 453 54 HOH HOH . I 4 HOH A 49 454 55 HOH HOH . I 4 HOH A 50 455 57 HOH HOH . I 4 HOH A 51 456 59 HOH HOH . I 4 HOH A 52 457 60 HOH HOH . I 4 HOH A 53 458 65 HOH HOH . I 4 HOH A 54 459 67 HOH HOH . I 4 HOH A 55 460 69 HOH HOH . I 4 HOH A 56 461 70 HOH HOH . I 4 HOH A 57 462 72 HOH HOH . I 4 HOH A 58 463 76 HOH HOH . I 4 HOH A 59 464 78 HOH HOH . I 4 HOH A 60 465 79 HOH HOH . I 4 HOH A 61 466 80 HOH HOH . I 4 HOH A 62 467 83 HOH HOH . I 4 HOH A 63 468 86 HOH HOH . I 4 HOH A 64 469 87 HOH HOH . I 4 HOH A 65 470 91 HOH HOH . I 4 HOH A 66 471 93 HOH HOH . I 4 HOH A 67 472 99 HOH HOH . I 4 HOH A 68 473 100 HOH HOH . I 4 HOH A 69 474 101 HOH HOH . I 4 HOH A 70 475 104 HOH HOH . I 4 HOH A 71 476 107 HOH HOH . I 4 HOH A 72 477 108 HOH HOH . I 4 HOH A 73 478 110 HOH HOH . I 4 HOH A 74 479 111 HOH HOH . I 4 HOH A 75 480 114 HOH HOH . I 4 HOH A 76 481 116 HOH HOH . I 4 HOH A 77 482 118 HOH HOH . I 4 HOH A 78 483 125 HOH HOH . I 4 HOH A 79 484 128 HOH HOH . I 4 HOH A 80 485 130 HOH HOH . I 4 HOH A 81 486 134 HOH HOH . I 4 HOH A 82 487 135 HOH HOH . I 4 HOH A 83 488 136 HOH HOH . I 4 HOH A 84 489 137 HOH HOH . I 4 HOH A 85 490 138 HOH HOH . I 4 HOH A 86 491 139 HOH HOH . I 4 HOH A 87 492 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 3 -0.642 6.359 18.386 0.7 13.38 ? S SO4 301 A 1 HETATM 2 O O1 SO4 . . . H 3 -0.709 7.704 18.935 0.7 24.4 ? O1 SO4 301 A 1 HETATM 3 O O2 SO4 . . . H 3 -1.389 6.339 17.169 0.7 22.05 ? O2 SO4 301 A 1 HETATM 4 O O3 SO4 . . . H 3 0.78 6.071 18.298 0.7 26.41 ? O3 SO4 301 A 1 HETATM 5 O O4 SO4 . . . H 3 -1.283 5.434 19.289 0.7 23.06 ? O4 SO4 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #