data_3DGB # _model_server_result.job_id 374OBokZxfgzXJjnyVqNKQ _model_server_result.datetime_utc '2024-11-05 00:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 3DGB # _exptl.entry_id 3DGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DGB _cell.length_a 133.842 _cell.length_b 133.842 _cell.length_c 103.371 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4,5,6,7,8 A,B,C,D 2 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 133.842 133.842 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 133.842 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 133.842 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 133.842 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 133.842 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 133.842 133.842 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 200 A ASP 200 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A OE2 GLU 226 A GLU 226 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A OD2 ASP 251 A ASP 251 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc4 C O1 MUC . A MUC 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 B MG MG . A MG 2001 1_555 D O HOH . A HOH 2237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DGB _atom_sites.fract_transf_matrix[1][1] 0.007471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 1 MG MG2 . C 3 MUC A 1 1001 1 MUC MCL . D 4 HOH A 1 2002 2 HOH HOH . D 4 HOH A 2 2003 3 HOH HOH . D 4 HOH A 3 2004 4 HOH HOH . D 4 HOH A 4 2005 5 HOH HOH . D 4 HOH A 5 2006 6 HOH HOH . D 4 HOH A 6 2007 7 HOH HOH . D 4 HOH A 7 2008 8 HOH HOH . D 4 HOH A 8 2009 9 HOH HOH . D 4 HOH A 9 2010 10 HOH HOH . D 4 HOH A 10 2011 12 HOH HOH . D 4 HOH A 11 2012 13 HOH HOH . D 4 HOH A 12 2013 14 HOH HOH . D 4 HOH A 13 2014 15 HOH HOH . D 4 HOH A 14 2015 16 HOH HOH . D 4 HOH A 15 2016 17 HOH HOH . D 4 HOH A 16 2017 19 HOH HOH . D 4 HOH A 17 2018 20 HOH HOH . D 4 HOH A 18 2019 21 HOH HOH . D 4 HOH A 19 2020 22 HOH HOH . D 4 HOH A 20 2021 23 HOH HOH . D 4 HOH A 21 2022 24 HOH HOH . D 4 HOH A 22 2023 25 HOH HOH . D 4 HOH A 23 2024 26 HOH HOH . D 4 HOH A 24 2025 28 HOH HOH . D 4 HOH A 25 2026 29 HOH HOH . D 4 HOH A 26 2027 30 HOH HOH . D 4 HOH A 27 2028 31 HOH HOH . D 4 HOH A 28 2029 32 HOH HOH . D 4 HOH A 29 2030 33 HOH HOH . D 4 HOH A 30 2031 34 HOH HOH . D 4 HOH A 31 2032 35 HOH HOH . D 4 HOH A 32 2033 36 HOH HOH . D 4 HOH A 33 2034 37 HOH HOH . D 4 HOH A 34 2035 38 HOH HOH . D 4 HOH A 35 2036 39 HOH HOH . D 4 HOH A 36 2037 40 HOH HOH . D 4 HOH A 37 2038 41 HOH HOH . D 4 HOH A 38 2039 42 HOH HOH . D 4 HOH A 39 2040 43 HOH HOH . D 4 HOH A 40 2041 44 HOH HOH . D 4 HOH A 41 2042 45 HOH HOH . D 4 HOH A 42 2043 46 HOH HOH . D 4 HOH A 43 2044 47 HOH HOH . D 4 HOH A 44 2045 48 HOH HOH . D 4 HOH A 45 2046 49 HOH HOH . D 4 HOH A 46 2047 50 HOH HOH . D 4 HOH A 47 2048 52 HOH HOH . D 4 HOH A 48 2049 53 HOH HOH . D 4 HOH A 49 2050 54 HOH HOH . D 4 HOH A 50 2051 55 HOH HOH . D 4 HOH A 51 2052 56 HOH HOH . D 4 HOH A 52 2053 57 HOH HOH . D 4 HOH A 53 2054 58 HOH HOH . D 4 HOH A 54 2055 59 HOH HOH . D 4 HOH A 55 2056 60 HOH HOH . D 4 HOH A 56 2057 61 HOH HOH . D 4 HOH A 57 2058 62 HOH HOH . D 4 HOH A 58 2059 63 HOH HOH . D 4 HOH A 59 2060 64 HOH HOH . D 4 HOH A 60 2061 65 HOH HOH . D 4 HOH A 61 2062 66 HOH HOH . D 4 HOH A 62 2063 67 HOH HOH . D 4 HOH A 63 2064 68 HOH HOH . D 4 HOH A 64 2065 69 HOH HOH . D 4 HOH A 65 2066 70 HOH HOH . D 4 HOH A 66 2067 71 HOH HOH . D 4 HOH A 67 2068 72 HOH HOH . D 4 HOH A 68 2069 73 HOH HOH . D 4 HOH A 69 2070 74 HOH HOH . D 4 HOH A 70 2071 75 HOH HOH . D 4 HOH A 71 2072 76 HOH HOH . D 4 HOH A 72 2073 77 HOH HOH . D 4 HOH A 73 2074 78 HOH HOH . D 4 HOH A 74 2075 79 HOH HOH . D 4 HOH A 75 2076 80 HOH HOH . D 4 HOH A 76 2077 81 HOH HOH . D 4 HOH A 77 2078 82 HOH HOH . D 4 HOH A 78 2079 83 HOH HOH . D 4 HOH A 79 2080 84 HOH HOH . D 4 HOH A 80 2081 85 HOH HOH . D 4 HOH A 81 2082 86 HOH HOH . D 4 HOH A 82 2083 87 HOH HOH . D 4 HOH A 83 2084 88 HOH HOH . D 4 HOH A 84 2085 89 HOH HOH . D 4 HOH A 85 2086 90 HOH HOH . D 4 HOH A 86 2087 91 HOH HOH . D 4 HOH A 87 2088 92 HOH HOH . D 4 HOH A 88 2089 93 HOH HOH . D 4 HOH A 89 2090 94 HOH HOH . D 4 HOH A 90 2091 95 HOH HOH . D 4 HOH A 91 2092 96 HOH HOH . D 4 HOH A 92 2093 97 HOH HOH . D 4 HOH A 93 2094 98 HOH HOH . D 4 HOH A 94 2095 99 HOH HOH . D 4 HOH A 95 2096 100 HOH HOH . D 4 HOH A 96 2097 101 HOH HOH . D 4 HOH A 97 2098 102 HOH HOH . D 4 HOH A 98 2099 103 HOH HOH . D 4 HOH A 99 2100 104 HOH HOH . D 4 HOH A 100 2101 105 HOH HOH . D 4 HOH A 101 2102 106 HOH HOH . D 4 HOH A 102 2103 108 HOH HOH . D 4 HOH A 103 2104 109 HOH HOH . D 4 HOH A 104 2105 110 HOH HOH . D 4 HOH A 105 2106 111 HOH HOH . D 4 HOH A 106 2107 112 HOH HOH . D 4 HOH A 107 2108 113 HOH HOH . D 4 HOH A 108 2109 114 HOH HOH . D 4 HOH A 109 2110 116 HOH HOH . D 4 HOH A 110 2111 117 HOH HOH . D 4 HOH A 111 2112 118 HOH HOH . D 4 HOH A 112 2113 119 HOH HOH . D 4 HOH A 113 2114 120 HOH HOH . D 4 HOH A 114 2115 122 HOH HOH . D 4 HOH A 115 2116 123 HOH HOH . D 4 HOH A 116 2117 124 HOH HOH . D 4 HOH A 117 2118 125 HOH HOH . D 4 HOH A 118 2119 126 HOH HOH . D 4 HOH A 119 2120 127 HOH HOH . D 4 HOH A 120 2121 128 HOH HOH . D 4 HOH A 121 2122 129 HOH HOH . D 4 HOH A 122 2123 130 HOH HOH . D 4 HOH A 123 2124 131 HOH HOH . D 4 HOH A 124 2125 132 HOH HOH . D 4 HOH A 125 2126 133 HOH HOH . D 4 HOH A 126 2127 134 HOH HOH . D 4 HOH A 127 2128 135 HOH HOH . D 4 HOH A 128 2129 136 HOH HOH . D 4 HOH A 129 2130 137 HOH HOH . D 4 HOH A 130 2131 138 HOH HOH . D 4 HOH A 131 2132 139 HOH HOH . D 4 HOH A 132 2133 140 HOH HOH . D 4 HOH A 133 2134 141 HOH HOH . D 4 HOH A 134 2135 142 HOH HOH . D 4 HOH A 135 2136 143 HOH HOH . D 4 HOH A 136 2137 144 HOH HOH . D 4 HOH A 137 2138 145 HOH HOH . D 4 HOH A 138 2139 146 HOH HOH . D 4 HOH A 139 2140 147 HOH HOH . D 4 HOH A 140 2141 148 HOH HOH . D 4 HOH A 141 2142 149 HOH HOH . D 4 HOH A 142 2143 150 HOH HOH . D 4 HOH A 143 2144 151 HOH HOH . D 4 HOH A 144 2145 152 HOH HOH . D 4 HOH A 145 2146 154 HOH HOH . D 4 HOH A 146 2147 155 HOH HOH . D 4 HOH A 147 2148 156 HOH HOH . D 4 HOH A 148 2149 157 HOH HOH . D 4 HOH A 149 2150 158 HOH HOH . D 4 HOH A 150 2151 159 HOH HOH . D 4 HOH A 151 2152 160 HOH HOH . D 4 HOH A 152 2153 161 HOH HOH . D 4 HOH A 153 2154 162 HOH HOH . D 4 HOH A 154 2155 163 HOH HOH . D 4 HOH A 155 2156 164 HOH HOH . D 4 HOH A 156 2157 165 HOH HOH . D 4 HOH A 157 2158 166 HOH HOH . D 4 HOH A 158 2159 167 HOH HOH . D 4 HOH A 159 2160 168 HOH HOH . D 4 HOH A 160 2161 169 HOH HOH . D 4 HOH A 161 2162 170 HOH HOH . D 4 HOH A 162 2163 171 HOH HOH . D 4 HOH A 163 2164 172 HOH HOH . D 4 HOH A 164 2165 173 HOH HOH . D 4 HOH A 165 2166 174 HOH HOH . D 4 HOH A 166 2167 175 HOH HOH . D 4 HOH A 167 2168 176 HOH HOH . D 4 HOH A 168 2169 177 HOH HOH . D 4 HOH A 169 2170 178 HOH HOH . D 4 HOH A 170 2171 179 HOH HOH . D 4 HOH A 171 2172 180 HOH HOH . D 4 HOH A 172 2173 181 HOH HOH . D 4 HOH A 173 2174 182 HOH HOH . D 4 HOH A 174 2175 183 HOH HOH . D 4 HOH A 175 2176 184 HOH HOH . D 4 HOH A 176 2177 185 HOH HOH . D 4 HOH A 177 2178 186 HOH HOH . D 4 HOH A 178 2179 187 HOH HOH . D 4 HOH A 179 2180 188 HOH HOH . D 4 HOH A 180 2181 189 HOH HOH . D 4 HOH A 181 2182 190 HOH HOH . D 4 HOH A 182 2183 191 HOH HOH . D 4 HOH A 183 2184 192 HOH HOH . D 4 HOH A 184 2185 193 HOH HOH . D 4 HOH A 185 2186 194 HOH HOH . D 4 HOH A 186 2187 196 HOH HOH . D 4 HOH A 187 2188 197 HOH HOH . D 4 HOH A 188 2189 199 HOH HOH . D 4 HOH A 189 2190 200 HOH HOH . D 4 HOH A 190 2191 201 HOH HOH . D 4 HOH A 191 2192 202 HOH HOH . D 4 HOH A 192 2193 204 HOH HOH . D 4 HOH A 193 2194 205 HOH HOH . D 4 HOH A 194 2195 206 HOH HOH . D 4 HOH A 195 2196 207 HOH HOH . D 4 HOH A 196 2197 208 HOH HOH . D 4 HOH A 197 2198 209 HOH HOH . D 4 HOH A 198 2199 212 HOH HOH . D 4 HOH A 199 2200 213 HOH HOH . D 4 HOH A 200 2201 214 HOH HOH . D 4 HOH A 201 2202 217 HOH HOH . D 4 HOH A 202 2203 219 HOH HOH . D 4 HOH A 203 2204 221 HOH HOH . D 4 HOH A 204 2205 224 HOH HOH . D 4 HOH A 205 2206 225 HOH HOH . D 4 HOH A 206 2207 226 HOH HOH . D 4 HOH A 207 2208 227 HOH HOH . D 4 HOH A 208 2209 228 HOH HOH . D 4 HOH A 209 2210 229 HOH HOH . D 4 HOH A 210 2211 230 HOH HOH . D 4 HOH A 211 2212 231 HOH HOH . D 4 HOH A 212 2213 232 HOH HOH . D 4 HOH A 213 2214 235 HOH HOH . D 4 HOH A 214 2215 236 HOH HOH . D 4 HOH A 215 2216 239 HOH HOH . D 4 HOH A 216 2217 240 HOH HOH . D 4 HOH A 217 2218 244 HOH HOH . D 4 HOH A 218 2219 247 HOH HOH . D 4 HOH A 219 2220 248 HOH HOH . D 4 HOH A 220 2221 249 HOH HOH . D 4 HOH A 221 2222 253 HOH HOH . D 4 HOH A 222 2223 256 HOH HOH . D 4 HOH A 223 2224 257 HOH HOH . D 4 HOH A 224 2225 266 HOH HOH . D 4 HOH A 225 2226 267 HOH HOH . D 4 HOH A 226 2227 269 HOH HOH . D 4 HOH A 227 2228 274 HOH HOH . D 4 HOH A 228 2229 298 HOH HOH . D 4 HOH A 229 2230 306 HOH HOH . D 4 HOH A 230 2231 307 HOH HOH . D 4 HOH A 231 2232 345 HOH HOH . D 4 HOH A 232 2233 400 HOH HOH . D 4 HOH A 233 2234 401 HOH HOH . D 4 HOH A 234 2235 403 HOH HOH . D 4 HOH A 235 2236 404 HOH HOH . D 4 HOH A 236 2237 405 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 51.961 _atom_site.Cartn_y 45.589 _atom_site.Cartn_z 15.655 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #