data_3DGE # _model_server_result.job_id eUhNE7BKPU1ccHjUCPq8Cg _model_server_result.datetime_utc '2024-11-29 13:56:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":160}' # _entry.id 3DGE # _exptl.entry_id 3DGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.42 _cell.angle_gamma 90 _cell.entry_id 3DGE _cell.length_a 183.958 _cell.length_b 90.668 _cell.length_c 68.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,J,K,L,M 1 1 C,D,G,H,L,M 2 1 A,B,E,F,J,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 330 1_555 A SG CYS 128 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 C SG CYS 99 B CYS 330 1_555 C SG CYS 128 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 354 n n S O2 SO4 doub 355 n n S O3 SO4 sing 356 n n S O4 SO4 sing 357 n n # _atom_sites.entry_id 3DGE _atom_sites.fract_transf_matrix[1][1] 0.005436 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00181 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015279 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ADP A 1 500 500 ADP ADP . F 4 SO4 C 1 150 150 SO4 SO4 . G 3 ADP B 1 600 600 ADP ADP . H 4 SO4 D 1 160 160 SO4 SO4 . I 5 CIT N 1 3 3 CIT CIT . J 6 HOH A 1 1 1 HOH HOH . J 6 HOH A 2 11 11 HOH HOH . J 6 HOH A 3 14 14 HOH HOH . J 6 HOH A 4 17 17 HOH HOH . J 6 HOH A 5 18 18 HOH HOH . J 6 HOH A 6 21 21 HOH HOH . J 6 HOH A 7 22 22 HOH HOH . J 6 HOH A 8 23 23 HOH HOH . J 6 HOH A 9 32 32 HOH HOH . J 6 HOH A 10 38 38 HOH HOH . J 6 HOH A 11 42 42 HOH HOH . J 6 HOH A 12 47 47 HOH HOH . J 6 HOH A 13 52 52 HOH HOH . J 6 HOH A 14 54 54 HOH HOH . J 6 HOH A 15 59 59 HOH HOH . J 6 HOH A 16 60 60 HOH HOH . J 6 HOH A 17 69 69 HOH HOH . J 6 HOH A 18 78 78 HOH HOH . J 6 HOH A 19 108 108 HOH HOH . J 6 HOH A 20 109 109 HOH HOH . J 6 HOH A 21 110 110 HOH HOH . J 6 HOH A 22 111 111 HOH HOH . J 6 HOH A 23 115 115 HOH HOH . J 6 HOH A 24 116 116 HOH HOH . J 6 HOH A 25 125 125 HOH HOH . J 6 HOH A 26 126 126 HOH HOH . J 6 HOH A 27 127 127 HOH HOH . J 6 HOH A 28 128 128 HOH HOH . J 6 HOH A 29 136 136 HOH HOH . J 6 HOH A 30 137 137 HOH HOH . J 6 HOH A 31 141 141 HOH HOH . J 6 HOH A 32 142 142 HOH HOH . J 6 HOH A 33 149 149 HOH HOH . J 6 HOH A 34 151 151 HOH HOH . J 6 HOH A 35 152 152 HOH HOH . J 6 HOH A 36 154 154 HOH HOH . J 6 HOH A 37 160 160 HOH HOH . K 6 HOH C 1 151 4 HOH HOH . K 6 HOH C 2 152 6 HOH HOH . K 6 HOH C 3 153 13 HOH HOH . K 6 HOH C 4 154 25 HOH HOH . K 6 HOH C 5 155 31 HOH HOH . K 6 HOH C 6 156 33 HOH HOH . K 6 HOH C 7 157 36 HOH HOH . K 6 HOH C 8 158 39 HOH HOH . K 6 HOH C 9 159 41 HOH HOH . K 6 HOH C 10 160 48 HOH HOH . K 6 HOH C 11 161 49 HOH HOH . K 6 HOH C 12 162 50 HOH HOH . K 6 HOH C 13 163 61 HOH HOH . K 6 HOH C 14 164 62 HOH HOH . K 6 HOH C 15 165 68 HOH HOH . K 6 HOH C 16 166 77 HOH HOH . K 6 HOH C 17 167 93 HOH HOH . K 6 HOH C 18 168 99 HOH HOH . K 6 HOH C 19 169 100 HOH HOH . K 6 HOH C 20 170 101 HOH HOH . K 6 HOH C 21 171 106 HOH HOH . K 6 HOH C 22 172 112 HOH HOH . K 6 HOH C 23 173 114 HOH HOH . K 6 HOH C 24 174 134 HOH HOH . K 6 HOH C 25 175 140 HOH HOH . K 6 HOH C 26 176 148 HOH HOH . K 6 HOH C 27 177 161 HOH HOH . L 6 HOH B 1 2 2 HOH HOH . L 6 HOH B 2 5 5 HOH HOH . L 6 HOH B 3 8 8 HOH HOH . L 6 HOH B 4 9 9 HOH HOH . L 6 HOH B 5 10 10 HOH HOH . L 6 HOH B 6 12 12 HOH HOH . L 6 HOH B 7 19 19 HOH HOH . L 6 HOH B 8 20 20 HOH HOH . L 6 HOH B 9 24 24 HOH HOH . L 6 HOH B 10 27 27 HOH HOH . L 6 HOH B 11 28 28 HOH HOH . L 6 HOH B 12 29 29 HOH HOH . L 6 HOH B 13 30 30 HOH HOH . L 6 HOH B 14 34 34 HOH HOH . L 6 HOH B 15 35 35 HOH HOH . L 6 HOH B 16 40 40 HOH HOH . L 6 HOH B 17 43 43 HOH HOH . L 6 HOH B 18 45 45 HOH HOH . L 6 HOH B 19 46 46 HOH HOH . L 6 HOH B 20 51 51 HOH HOH . L 6 HOH B 21 53 53 HOH HOH . L 6 HOH B 22 57 57 HOH HOH . L 6 HOH B 23 70 70 HOH HOH . L 6 HOH B 24 72 72 HOH HOH . L 6 HOH B 25 73 73 HOH HOH . L 6 HOH B 26 74 74 HOH HOH . L 6 HOH B 27 76 76 HOH HOH . L 6 HOH B 28 81 81 HOH HOH . L 6 HOH B 29 82 82 HOH HOH . L 6 HOH B 30 83 83 HOH HOH . L 6 HOH B 31 84 84 HOH HOH . L 6 HOH B 32 85 85 HOH HOH . L 6 HOH B 33 86 86 HOH HOH . L 6 HOH B 34 87 87 HOH HOH . L 6 HOH B 35 88 88 HOH HOH . L 6 HOH B 36 94 94 HOH HOH . L 6 HOH B 37 95 95 HOH HOH . L 6 HOH B 38 96 96 HOH HOH . L 6 HOH B 39 97 97 HOH HOH . L 6 HOH B 40 98 98 HOH HOH . L 6 HOH B 41 113 113 HOH HOH . L 6 HOH B 42 117 117 HOH HOH . L 6 HOH B 43 119 119 HOH HOH . L 6 HOH B 44 121 121 HOH HOH . L 6 HOH B 45 122 122 HOH HOH . L 6 HOH B 46 123 123 HOH HOH . L 6 HOH B 47 124 124 HOH HOH . L 6 HOH B 48 133 133 HOH HOH . L 6 HOH B 49 138 138 HOH HOH . L 6 HOH B 50 143 143 HOH HOH . L 6 HOH B 51 144 144 HOH HOH . L 6 HOH B 52 145 145 HOH HOH . L 6 HOH B 53 146 146 HOH HOH . L 6 HOH B 54 147 147 HOH HOH . L 6 HOH B 55 153 153 HOH HOH . L 6 HOH B 56 155 155 HOH HOH . L 6 HOH B 57 156 156 HOH HOH . L 6 HOH B 58 157 157 HOH HOH . L 6 HOH B 59 158 158 HOH HOH . L 6 HOH B 60 159 159 HOH HOH . M 6 HOH D 1 161 3 HOH HOH . M 6 HOH D 2 162 7 HOH HOH . M 6 HOH D 3 163 16 HOH HOH . M 6 HOH D 4 164 26 HOH HOH . M 6 HOH D 5 165 37 HOH HOH . M 6 HOH D 6 166 44 HOH HOH . M 6 HOH D 7 167 55 HOH HOH . M 6 HOH D 8 168 56 HOH HOH . M 6 HOH D 9 169 58 HOH HOH . M 6 HOH D 10 170 63 HOH HOH . M 6 HOH D 11 171 64 HOH HOH . M 6 HOH D 12 172 65 HOH HOH . M 6 HOH D 13 173 66 HOH HOH . M 6 HOH D 14 174 67 HOH HOH . M 6 HOH D 15 175 71 HOH HOH . M 6 HOH D 16 176 75 HOH HOH . M 6 HOH D 17 177 79 HOH HOH . M 6 HOH D 18 178 89 HOH HOH . M 6 HOH D 19 179 90 HOH HOH . M 6 HOH D 20 180 91 HOH HOH . M 6 HOH D 21 181 92 HOH HOH . M 6 HOH D 22 182 102 HOH HOH . M 6 HOH D 23 183 103 HOH HOH . M 6 HOH D 24 184 104 HOH HOH . M 6 HOH D 25 185 105 HOH HOH . M 6 HOH D 26 186 107 HOH HOH . M 6 HOH D 27 187 118 HOH HOH . M 6 HOH D 28 188 120 HOH HOH . M 6 HOH D 29 189 129 HOH HOH . M 6 HOH D 30 190 130 HOH HOH . M 6 HOH D 31 191 131 HOH HOH . M 6 HOH D 32 192 132 HOH HOH . M 6 HOH D 33 193 135 HOH HOH . M 6 HOH D 34 194 139 HOH HOH . M 6 HOH D 35 195 150 HOH HOH . M 6 HOH D 36 196 162 HOH HOH . N 6 HOH N 1 15 15 HOH HOH . N 6 HOH N 2 80 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . H 4 59.056 55.442 7.533 1 103.52 ? S SO4 160 D 1 HETATM 2 O O1 SO4 . . . H 4 59.754 55.941 8.72 1 103.99 ? O1 SO4 160 D 1 HETATM 3 O O2 SO4 . . . H 4 57.843 56.255 7.405 1 102.85 ? O2 SO4 160 D 1 HETATM 4 O O3 SO4 . . . H 4 59.901 55.604 6.344 1 102.72 ? O3 SO4 160 D 1 HETATM 5 O O4 SO4 . . . H 4 58.768 53.999 7.676 1 101.89 ? O4 SO4 160 D 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 5 #