data_3DGY # _model_server_result.job_id hJPIWnmhvw-yjB4by8eCtA _model_server_result.datetime_utc '2024-11-25 02:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":98}' # _entry.id 3DGY # _exptl.entry_id 3DGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.63 _cell.angle_gamma 90 _cell.entry_id 3DGY _cell.length_a 101.489 _cell.length_b 67.313 _cell.length_c 57.234 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 B,F,G,J 2 1 C,H,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 9 B CYS 9 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 C SG CYS 9 C CYS 9 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 335 n n S O2 SO4 doub 336 n n S O3 SO4 sing 337 n n S O4 SO4 sing 338 n n # _atom_sites.entry_id 3DGY _atom_sites.fract_transf_matrix[1][1] 0.009853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001849 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BGC A 1 99 99 BGC GLC . E 3 SO4 A 1 98 98 SO4 SO4 . F 3 SO4 B 1 100 100 SO4 SO4 . G 4 2GP B 1 98 98 2GP 2GP . H 3 SO4 C 1 198 98 SO4 SO4 . I 5 HOH A 1 100 1 HOH HOH . I 5 HOH A 2 101 3 HOH HOH . I 5 HOH A 3 102 4 HOH HOH . I 5 HOH A 4 103 6 HOH HOH . I 5 HOH A 5 104 10 HOH HOH . I 5 HOH A 6 105 11 HOH HOH . I 5 HOH A 7 106 12 HOH HOH . I 5 HOH A 8 107 15 HOH HOH . I 5 HOH A 9 108 16 HOH HOH . I 5 HOH A 10 109 18 HOH HOH . I 5 HOH A 11 110 20 HOH HOH . I 5 HOH A 12 111 21 HOH HOH . I 5 HOH A 13 112 22 HOH HOH . I 5 HOH A 14 113 23 HOH HOH . I 5 HOH A 15 114 24 HOH HOH . I 5 HOH A 16 115 27 HOH HOH . I 5 HOH A 17 116 28 HOH HOH . I 5 HOH A 18 117 31 HOH HOH . I 5 HOH A 19 118 32 HOH HOH . I 5 HOH A 20 119 33 HOH HOH . I 5 HOH A 21 120 35 HOH HOH . I 5 HOH A 22 121 39 HOH HOH . I 5 HOH A 23 122 41 HOH HOH . I 5 HOH A 24 123 42 HOH HOH . I 5 HOH A 25 124 43 HOH HOH . I 5 HOH A 26 125 46 HOH HOH . I 5 HOH A 27 126 47 HOH HOH . I 5 HOH A 28 127 49 HOH HOH . I 5 HOH A 29 128 52 HOH HOH . I 5 HOH A 30 129 53 HOH HOH . I 5 HOH A 31 130 54 HOH HOH . I 5 HOH A 32 131 58 HOH HOH . I 5 HOH A 33 132 59 HOH HOH . I 5 HOH A 34 133 60 HOH HOH . I 5 HOH A 35 134 61 HOH HOH . I 5 HOH A 36 135 62 HOH HOH . I 5 HOH A 37 136 63 HOH HOH . I 5 HOH A 38 138 72 HOH HOH . I 5 HOH A 39 139 77 HOH HOH . I 5 HOH A 40 140 80 HOH HOH . I 5 HOH A 41 141 82 HOH HOH . I 5 HOH A 42 142 85 HOH HOH . I 5 HOH A 43 143 88 HOH HOH . I 5 HOH A 44 144 90 HOH HOH . I 5 HOH A 45 145 91 HOH HOH . I 5 HOH A 46 146 92 HOH HOH . I 5 HOH A 47 147 93 HOH HOH . I 5 HOH A 48 148 95 HOH HOH . I 5 HOH A 49 149 96 HOH HOH . I 5 HOH A 50 150 97 HOH HOH . I 5 HOH A 51 151 98 HOH HOH . I 5 HOH A 52 152 102 HOH HOH . I 5 HOH A 53 153 105 HOH HOH . I 5 HOH A 54 154 112 HOH HOH . I 5 HOH A 55 155 113 HOH HOH . I 5 HOH A 56 156 114 HOH HOH . I 5 HOH A 57 157 116 HOH HOH . I 5 HOH A 58 158 121 HOH HOH . I 5 HOH A 59 159 122 HOH HOH . I 5 HOH A 60 160 123 HOH HOH . I 5 HOH A 61 161 129 HOH HOH . I 5 HOH A 62 162 130 HOH HOH . I 5 HOH A 63 163 132 HOH HOH . I 5 HOH A 64 164 135 HOH HOH . I 5 HOH A 65 165 137 HOH HOH . I 5 HOH A 66 166 140 HOH HOH . I 5 HOH A 67 167 141 HOH HOH . I 5 HOH A 68 168 142 HOH HOH . I 5 HOH A 69 169 144 HOH HOH . I 5 HOH A 70 170 148 HOH HOH . I 5 HOH A 71 171 152 HOH HOH . I 5 HOH A 72 172 159 HOH HOH . I 5 HOH A 73 173 161 HOH HOH . I 5 HOH A 74 174 162 HOH HOH . I 5 HOH A 75 175 163 HOH HOH . I 5 HOH A 76 176 164 HOH HOH . I 5 HOH A 77 177 165 HOH HOH . I 5 HOH A 78 178 166 HOH HOH . I 5 HOH A 79 179 170 HOH HOH . I 5 HOH A 80 180 172 HOH HOH . I 5 HOH A 81 181 174 HOH HOH . I 5 HOH A 82 182 175 HOH HOH . I 5 HOH A 83 184 179 HOH HOH . I 5 HOH A 84 185 180 HOH HOH . I 5 HOH A 85 186 181 HOH HOH . I 5 HOH A 86 189 187 HOH HOH . I 5 HOH A 87 191 193 HOH HOH . I 5 HOH A 88 192 195 HOH HOH . I 5 HOH A 89 193 198 HOH HOH . I 5 HOH A 90 194 199 HOH HOH . I 5 HOH A 91 195 205 HOH HOH . I 5 HOH A 92 196 206 HOH HOH . I 5 HOH A 93 197 209 HOH HOH . I 5 HOH A 94 198 217 HOH HOH . I 5 HOH A 95 199 218 HOH HOH . I 5 HOH A 96 200 219 HOH HOH . I 5 HOH A 97 201 222 HOH HOH . I 5 HOH A 98 202 223 HOH HOH . I 5 HOH A 99 203 231 HOH HOH . I 5 HOH A 100 204 233 HOH HOH . I 5 HOH A 101 205 234 HOH HOH . I 5 HOH A 102 206 236 HOH HOH . I 5 HOH A 103 207 243 HOH HOH . I 5 HOH A 104 208 249 HOH HOH . I 5 HOH A 105 209 254 HOH HOH . I 5 HOH A 106 210 256 HOH HOH . I 5 HOH A 107 211 258 HOH HOH . I 5 HOH A 108 212 260 HOH HOH . I 5 HOH A 109 213 261 HOH HOH . I 5 HOH A 110 214 262 HOH HOH . I 5 HOH A 111 215 264 HOH HOH . I 5 HOH A 112 216 270 HOH HOH . I 5 HOH A 113 217 272 HOH HOH . I 5 HOH A 114 218 273 HOH HOH . I 5 HOH A 115 219 275 HOH HOH . I 5 HOH A 116 220 277 HOH HOH . I 5 HOH A 117 238 167 HOH HOH . I 5 HOH A 118 241 183 HOH HOH . J 5 HOH B 1 183 176 HOH HOH . J 5 HOH B 2 184 182 HOH HOH . J 5 HOH B 3 185 185 HOH HOH . J 5 HOH B 4 186 192 HOH HOH . J 5 HOH B 5 187 2 HOH HOH . J 5 HOH B 6 188 5 HOH HOH . J 5 HOH B 7 189 7 HOH HOH . J 5 HOH B 8 190 13 HOH HOH . J 5 HOH B 9 191 19 HOH HOH . J 5 HOH B 10 192 25 HOH HOH . J 5 HOH B 11 193 26 HOH HOH . J 5 HOH B 12 194 29 HOH HOH . J 5 HOH B 13 195 30 HOH HOH . J 5 HOH B 14 196 36 HOH HOH . J 5 HOH B 15 197 37 HOH HOH . J 5 HOH B 16 198 38 HOH HOH . J 5 HOH B 17 199 40 HOH HOH . J 5 HOH B 18 200 44 HOH HOH . J 5 HOH B 19 201 45 HOH HOH . J 5 HOH B 20 202 48 HOH HOH . J 5 HOH B 21 203 50 HOH HOH . J 5 HOH B 22 204 51 HOH HOH . J 5 HOH B 23 205 55 HOH HOH . J 5 HOH B 24 206 65 HOH HOH . J 5 HOH B 25 207 66 HOH HOH . J 5 HOH B 26 208 68 HOH HOH . J 5 HOH B 27 209 70 HOH HOH . J 5 HOH B 28 210 73 HOH HOH . J 5 HOH B 29 211 75 HOH HOH . J 5 HOH B 30 212 76 HOH HOH . J 5 HOH B 31 213 83 HOH HOH . J 5 HOH B 32 214 87 HOH HOH . J 5 HOH B 33 215 94 HOH HOH . J 5 HOH B 34 216 100 HOH HOH . J 5 HOH B 35 217 101 HOH HOH . J 5 HOH B 36 218 108 HOH HOH . J 5 HOH B 37 219 109 HOH HOH . J 5 HOH B 38 220 111 HOH HOH . J 5 HOH B 39 221 118 HOH HOH . J 5 HOH B 40 222 120 HOH HOH . J 5 HOH B 41 223 125 HOH HOH . J 5 HOH B 42 224 126 HOH HOH . J 5 HOH B 43 225 128 HOH HOH . J 5 HOH B 44 226 134 HOH HOH . J 5 HOH B 45 227 143 HOH HOH . J 5 HOH B 46 228 145 HOH HOH . J 5 HOH B 47 229 150 HOH HOH . J 5 HOH B 48 230 154 HOH HOH . J 5 HOH B 49 231 155 HOH HOH . J 5 HOH B 50 232 157 HOH HOH . J 5 HOH B 51 233 158 HOH HOH . J 5 HOH B 52 234 160 HOH HOH . J 5 HOH B 53 235 169 HOH HOH . J 5 HOH B 54 236 171 HOH HOH . J 5 HOH B 55 237 177 HOH HOH . J 5 HOH B 56 238 178 HOH HOH . J 5 HOH B 57 239 188 HOH HOH . J 5 HOH B 58 240 189 HOH HOH . J 5 HOH B 59 241 191 HOH HOH . J 5 HOH B 60 242 194 HOH HOH . J 5 HOH B 61 243 196 HOH HOH . J 5 HOH B 62 244 200 HOH HOH . J 5 HOH B 63 245 201 HOH HOH . J 5 HOH B 64 246 202 HOH HOH . J 5 HOH B 65 247 204 HOH HOH . J 5 HOH B 66 248 208 HOH HOH . J 5 HOH B 67 249 211 HOH HOH . J 5 HOH B 68 250 213 HOH HOH . J 5 HOH B 69 251 214 HOH HOH . J 5 HOH B 70 252 216 HOH HOH . J 5 HOH B 71 253 224 HOH HOH . J 5 HOH B 72 254 225 HOH HOH . J 5 HOH B 73 255 228 HOH HOH . J 5 HOH B 74 256 229 HOH HOH . J 5 HOH B 75 257 230 HOH HOH . J 5 HOH B 76 258 232 HOH HOH . J 5 HOH B 77 259 238 HOH HOH . J 5 HOH B 78 260 239 HOH HOH . J 5 HOH B 79 261 240 HOH HOH . J 5 HOH B 80 262 247 HOH HOH . J 5 HOH B 81 263 252 HOH HOH . J 5 HOH B 82 264 255 HOH HOH . J 5 HOH B 83 265 259 HOH HOH . J 5 HOH B 84 266 265 HOH HOH . J 5 HOH B 85 267 268 HOH HOH . J 5 HOH B 86 268 269 HOH HOH . K 5 HOH C 1 137 64 HOH HOH . K 5 HOH C 2 177 248 HOH HOH . K 5 HOH C 3 199 8 HOH HOH . K 5 HOH C 4 200 9 HOH HOH . K 5 HOH C 5 201 14 HOH HOH . K 5 HOH C 6 202 17 HOH HOH . K 5 HOH C 7 203 34 HOH HOH . K 5 HOH C 8 204 56 HOH HOH . K 5 HOH C 9 205 57 HOH HOH . K 5 HOH C 10 206 67 HOH HOH . K 5 HOH C 11 207 69 HOH HOH . K 5 HOH C 12 208 71 HOH HOH . K 5 HOH C 13 209 74 HOH HOH . K 5 HOH C 14 210 78 HOH HOH . K 5 HOH C 15 211 79 HOH HOH . K 5 HOH C 16 212 81 HOH HOH . K 5 HOH C 17 213 84 HOH HOH . K 5 HOH C 18 214 86 HOH HOH . K 5 HOH C 19 215 89 HOH HOH . K 5 HOH C 20 216 99 HOH HOH . K 5 HOH C 21 217 103 HOH HOH . K 5 HOH C 22 218 104 HOH HOH . K 5 HOH C 23 219 106 HOH HOH . K 5 HOH C 24 220 107 HOH HOH . K 5 HOH C 25 221 110 HOH HOH . K 5 HOH C 26 222 115 HOH HOH . K 5 HOH C 27 223 117 HOH HOH . K 5 HOH C 28 224 119 HOH HOH . K 5 HOH C 29 225 124 HOH HOH . K 5 HOH C 30 226 127 HOH HOH . K 5 HOH C 31 227 131 HOH HOH . K 5 HOH C 32 228 133 HOH HOH . K 5 HOH C 33 229 136 HOH HOH . K 5 HOH C 34 230 138 HOH HOH . K 5 HOH C 35 231 139 HOH HOH . K 5 HOH C 36 232 146 HOH HOH . K 5 HOH C 37 233 147 HOH HOH . K 5 HOH C 38 234 149 HOH HOH . K 5 HOH C 39 235 151 HOH HOH . K 5 HOH C 40 236 153 HOH HOH . K 5 HOH C 41 237 156 HOH HOH . K 5 HOH C 42 239 168 HOH HOH . K 5 HOH C 43 240 173 HOH HOH . K 5 HOH C 44 242 184 HOH HOH . K 5 HOH C 45 243 186 HOH HOH . K 5 HOH C 46 244 190 HOH HOH . K 5 HOH C 47 245 197 HOH HOH . K 5 HOH C 48 246 203 HOH HOH . K 5 HOH C 49 247 207 HOH HOH . K 5 HOH C 50 248 210 HOH HOH . K 5 HOH C 51 249 212 HOH HOH . K 5 HOH C 52 250 215 HOH HOH . K 5 HOH C 53 251 220 HOH HOH . K 5 HOH C 54 252 221 HOH HOH . K 5 HOH C 55 253 226 HOH HOH . K 5 HOH C 56 254 227 HOH HOH . K 5 HOH C 57 255 235 HOH HOH . K 5 HOH C 58 256 237 HOH HOH . K 5 HOH C 59 257 241 HOH HOH . K 5 HOH C 60 258 242 HOH HOH . K 5 HOH C 61 259 244 HOH HOH . K 5 HOH C 62 260 245 HOH HOH . K 5 HOH C 63 261 246 HOH HOH . K 5 HOH C 64 262 250 HOH HOH . K 5 HOH C 65 263 251 HOH HOH . K 5 HOH C 66 264 253 HOH HOH . K 5 HOH C 67 265 257 HOH HOH . K 5 HOH C 68 266 263 HOH HOH . K 5 HOH C 69 267 266 HOH HOH . K 5 HOH C 70 268 267 HOH HOH . K 5 HOH C 71 269 271 HOH HOH . K 5 HOH C 72 270 274 HOH HOH . K 5 HOH C 73 271 276 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 67.687 -18.364 -13.078 1 34.71 ? S SO4 98 A 1 HETATM 2 O O1 SO4 . . . E 3 67.695 -19.638 -13.799 1 36.39 ? O1 SO4 98 A 1 HETATM 3 O O2 SO4 . . . E 3 68.12 -17.317 -14.001 1 35.72 ? O2 SO4 98 A 1 HETATM 4 O O3 SO4 . . . E 3 66.346 -18.052 -12.613 1 36.02 ? O3 SO4 98 A 1 HETATM 5 O O4 SO4 . . . E 3 68.664 -18.401 -12.02 1 33.81 ? O4 SO4 98 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 5 #