data_3DH2
#
_model_server_result.job_id            dsxIHqzDYE5drH4d-JN3Fw 
_model_server_result.datetime_utc      '2024-10-15 02:19:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":98}' 
#
_entry.id    3DH2 
#
_exptl.entry_id    3DH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-3'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          129.18 
_cell.angle_gamma         90 
_cell.entry_id            3DH2 
_cell.length_a            108.192 
_cell.length_b            62.648 
_cell.length_c            68.299 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,M 1 1 
B,H,I,N 2 1 
C,J,K,O 3 1 
D,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 9 B CYS 9 1_555 B SG CYS 97 B CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 C SG CYS 9 C CYS 9 1_555 C SG CYS 97 C CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 D SG CYS 9 D CYS 9 1_555 D SG CYS 97 D CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                3GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-3'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 3GP doub 1 n n 
P O2P 3GP sing 2 n n 
P O3P 3GP sing 3 n n 
P O3' 3GP sing 4 n n 
O2P HOP2 3GP sing 5 n n 
O3P HOP3 3GP sing 6 n n 
O5' C5' 3GP sing 7 n n 
O5' HO5' 3GP sing 8 n n 
C5' C4' 3GP sing 9 n n 
C5' "H5'1" 3GP sing 10 n n 
C5' "H5'2" 3GP sing 11 n n 
C4' O4' 3GP sing 12 n n 
C4' C3' 3GP sing 13 n n 
C4' H4' 3GP sing 14 n n 
O4' C1' 3GP sing 15 n n 
C3' O3' 3GP sing 16 n n 
C3' C2' 3GP sing 17 n n 
C3' H3' 3GP sing 18 n n 
C2' O2' 3GP sing 19 n n 
C2' C1' 3GP sing 20 n n 
C2' H2' 3GP sing 21 n n 
O2' HO2' 3GP sing 22 n n 
C1' N9 3GP sing 23 n n 
C1' H1' 3GP sing 24 n n 
N9 C8 3GP sing 25 n y 
N9 C4 3GP sing 26 n y 
C8 N7 3GP doub 27 n y 
C8 H8 3GP sing 28 n n 
N7 C5 3GP sing 29 n y 
C5 C6 3GP sing 30 n n 
C5 C4 3GP doub 31 n y 
C6 O6 3GP doub 32 n n 
C6 N1 3GP sing 33 n n 
N1 C2 3GP sing 34 n n 
N1 HN1 3GP sing 35 n n 
C2 N2 3GP sing 36 n n 
C2 N3 3GP doub 37 n n 
N2 HN21 3GP sing 38 n n 
N2 HN22 3GP sing 39 n n 
N3 C4 3GP sing 40 n n 
#
_atom_sites.entry_id                     3DH2 
_atom_sites.fract_transf_matrix[1][1]    0.009243 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007532 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015962 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BGC A 1 99 99 BGC GLC . 
F 3 SO4 A 1 100 100 SO4 SO4 . 
G 4 3GP A 1 98 98 3GP 3GP . 
H 2 BGC B 1 99 99 BGC GLC . 
I 4 3GP B 1 98 98 3GP 3GP . 
J 2 BGC C 1 99 99 BGC GLC . 
K 4 3GP C 1 98 98 3GP 3GP . 
L 4 3GP D 1 98 98 3GP 3GP . 
M 5 HOH A 1 102 4 HOH HOH . 
M 5 HOH A 2 103 6 HOH HOH . 
M 5 HOH A 3 104 8 HOH HOH . 
M 5 HOH A 4 105 10 HOH HOH . 
M 5 HOH A 5 106 11 HOH HOH . 
M 5 HOH A 6 107 12 HOH HOH . 
M 5 HOH A 7 108 13 HOH HOH . 
M 5 HOH A 8 109 16 HOH HOH . 
M 5 HOH A 9 110 17 HOH HOH . 
M 5 HOH A 10 111 18 HOH HOH . 
M 5 HOH A 11 112 20 HOH HOH . 
M 5 HOH A 12 113 21 HOH HOH . 
M 5 HOH A 13 115 26 HOH HOH . 
M 5 HOH A 14 116 27 HOH HOH . 
M 5 HOH A 15 117 28 HOH HOH . 
M 5 HOH A 16 118 29 HOH HOH . 
M 5 HOH A 17 119 31 HOH HOH . 
M 5 HOH A 18 121 34 HOH HOH . 
M 5 HOH A 19 122 35 HOH HOH . 
M 5 HOH A 20 123 38 HOH HOH . 
M 5 HOH A 21 124 39 HOH HOH . 
M 5 HOH A 22 125 40 HOH HOH . 
M 5 HOH A 23 126 42 HOH HOH . 
M 5 HOH A 24 127 44 HOH HOH . 
M 5 HOH A 25 128 45 HOH HOH . 
M 5 HOH A 26 129 49 HOH HOH . 
M 5 HOH A 27 130 50 HOH HOH . 
M 5 HOH A 28 132 61 HOH HOH . 
M 5 HOH A 29 133 71 HOH HOH . 
M 5 HOH A 30 134 88 HOH HOH . 
M 5 HOH A 31 135 96 HOH HOH . 
M 5 HOH A 32 136 99 HOH HOH . 
M 5 HOH A 33 137 102 HOH HOH . 
M 5 HOH A 34 138 107 HOH HOH . 
M 5 HOH A 35 139 110 HOH HOH . 
M 5 HOH A 36 140 113 HOH HOH . 
M 5 HOH A 37 141 115 HOH HOH . 
M 5 HOH A 38 142 120 HOH HOH . 
N 5 HOH B 1 114 22 HOH HOH . 
N 5 HOH B 2 115 7 HOH HOH . 
N 5 HOH B 3 116 47 HOH HOH . 
N 5 HOH B 4 117 56 HOH HOH . 
N 5 HOH B 5 118 57 HOH HOH . 
N 5 HOH B 6 119 58 HOH HOH . 
N 5 HOH B 7 120 59 HOH HOH . 
N 5 HOH B 8 121 60 HOH HOH . 
N 5 HOH B 9 122 65 HOH HOH . 
N 5 HOH B 10 123 68 HOH HOH . 
N 5 HOH B 11 124 69 HOH HOH . 
N 5 HOH B 12 125 70 HOH HOH . 
N 5 HOH B 13 126 75 HOH HOH . 
N 5 HOH B 14 127 77 HOH HOH . 
N 5 HOH B 15 128 78 HOH HOH . 
N 5 HOH B 16 129 79 HOH HOH . 
N 5 HOH B 17 130 81 HOH HOH . 
N 5 HOH B 18 131 91 HOH HOH . 
N 5 HOH B 19 132 93 HOH HOH . 
N 5 HOH B 20 133 94 HOH HOH . 
N 5 HOH B 21 134 95 HOH HOH . 
N 5 HOH B 22 135 105 HOH HOH . 
N 5 HOH B 23 136 114 HOH HOH . 
N 5 HOH B 24 137 119 HOH HOH . 
N 5 HOH B 25 138 124 HOH HOH . 
O 5 HOH C 1 120 32 HOH HOH . 
O 5 HOH C 2 121 53 HOH HOH . 
O 5 HOH C 3 122 54 HOH HOH . 
O 5 HOH C 4 123 55 HOH HOH . 
O 5 HOH C 5 124 62 HOH HOH . 
O 5 HOH C 6 125 63 HOH HOH . 
O 5 HOH C 7 126 64 HOH HOH . 
O 5 HOH C 8 127 66 HOH HOH . 
O 5 HOH C 9 128 67 HOH HOH . 
O 5 HOH C 10 129 72 HOH HOH . 
O 5 HOH C 11 130 73 HOH HOH . 
O 5 HOH C 12 131 74 HOH HOH . 
O 5 HOH C 13 132 80 HOH HOH . 
O 5 HOH C 14 133 82 HOH HOH . 
O 5 HOH C 15 134 84 HOH HOH . 
O 5 HOH C 16 135 86 HOH HOH . 
O 5 HOH C 17 136 87 HOH HOH . 
O 5 HOH C 18 137 89 HOH HOH . 
O 5 HOH C 19 138 92 HOH HOH . 
O 5 HOH C 20 139 101 HOH HOH . 
O 5 HOH C 21 140 103 HOH HOH . 
O 5 HOH C 22 141 108 HOH HOH . 
O 5 HOH C 23 142 109 HOH HOH . 
O 5 HOH C 24 143 116 HOH HOH . 
O 5 HOH C 25 144 117 HOH HOH . 
O 5 HOH C 26 145 121 HOH HOH . 
P 5 HOH D 1 101 1 HOH HOH . 
P 5 HOH D 2 102 52 HOH HOH . 
P 5 HOH D 3 103 2 HOH HOH . 
P 5 HOH D 4 104 3 HOH HOH . 
P 5 HOH D 5 105 5 HOH HOH . 
P 5 HOH D 6 106 9 HOH HOH . 
P 5 HOH D 7 107 14 HOH HOH . 
P 5 HOH D 8 108 15 HOH HOH . 
P 5 HOH D 9 109 19 HOH HOH . 
P 5 HOH D 10 110 23 HOH HOH . 
P 5 HOH D 11 111 24 HOH HOH . 
P 5 HOH D 12 112 25 HOH HOH . 
P 5 HOH D 13 113 30 HOH HOH . 
P 5 HOH D 14 114 33 HOH HOH . 
P 5 HOH D 15 115 36 HOH HOH . 
P 5 HOH D 16 116 37 HOH HOH . 
P 5 HOH D 17 117 41 HOH HOH . 
P 5 HOH D 18 118 43 HOH HOH . 
P 5 HOH D 19 119 46 HOH HOH . 
P 5 HOH D 20 120 48 HOH HOH . 
P 5 HOH D 21 121 51 HOH HOH . 
P 5 HOH D 22 122 76 HOH HOH . 
P 5 HOH D 23 123 83 HOH HOH . 
P 5 HOH D 24 124 85 HOH HOH . 
P 5 HOH D 25 125 90 HOH HOH . 
P 5 HOH D 26 126 97 HOH HOH . 
P 5 HOH D 27 127 98 HOH HOH . 
P 5 HOH D 28 128 100 HOH HOH . 
P 5 HOH D 29 129 104 HOH HOH . 
P 5 HOH D 30 130 106 HOH HOH . 
P 5 HOH D 31 131 111 HOH HOH . 
P 5 HOH D 32 132 112 HOH HOH . 
P 5 HOH D 33 133 118 HOH HOH . 
P 5 HOH D 34 134 122 HOH HOH . 
P 5 HOH D 35 135 123 HOH HOH . 
P 5 HOH D 36 136 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 3GP . . . G 4 92.561 5.052 17.365 1 29.06 ? P 3GP 98 A 1 
HETATM 2 O O1P 3GP . . . G 4 92.778 6.142 16.338 1 30.08 ? O1P 3GP 98 A 1 
HETATM 3 O O2P 3GP . . . G 4 91.104 4.644 17.29 1 28.45 ? O2P 3GP 98 A 1 
HETATM 4 O O3P 3GP . . . G 4 92.928 5.541 18.744 1 29.65 ? O3P 3GP 98 A 1 
HETATM 5 O O5' 3GP . . . G 4 94.94 3.584 12.827 1 21.69 ? O5' 3GP 98 A 1 
HETATM 6 C C5' 3GP . . . G 4 93.674 4.088 13.251 1 24.26 ? C5' 3GP 98 A 1 
HETATM 7 C C4' 3GP . . . G 4 93.175 3.515 14.592 1 21.99 ? C4' 3GP 98 A 1 
HETATM 8 O O4' 3GP . . . G 4 92.962 2.114 14.527 1 22.03 ? O4' 3GP 98 A 1 
HETATM 9 C C3' 3GP . . . G 4 94.176 3.727 15.723 1 22.56 ? C3' 3GP 98 A 1 
HETATM 10 O O3' 3GP . . . G 4 93.535 3.825 16.985 1 26.32 ? O3' 3GP 98 A 1 
HETATM 11 C C2' 3GP . . . G 4 94.957 2.438 15.715 1 20.26 ? C2' 3GP 98 A 1 
HETATM 12 O O2' 3GP . . . G 4 95.526 2.268 16.967 1 20.73 ? O2' 3GP 98 A 1 
HETATM 13 C C1' 3GP . . . G 4 93.836 1.458 15.446 1 19.02 ? C1' 3GP 98 A 1 
HETATM 14 N N9 3GP . . . G 4 94.223 0.169 14.88 1 18.27 ? N9 3GP 98 A 1 
HETATM 15 C C8 3GP . . . G 4 94.556 -0.118 13.571 1 18.99 ? C8 3GP 98 A 1 
HETATM 16 N N7 3GP . . . G 4 94.8 -1.449 13.464 1 17.77 ? N7 3GP 98 A 1 
HETATM 17 C C5 3GP . . . G 4 94.621 -1.992 14.697 1 18.05 ? C5 3GP 98 A 1 
HETATM 18 C C6 3GP . . . G 4 94.735 -3.279 15.175 1 17.3 ? C6 3GP 98 A 1 
HETATM 19 O O6 3GP . . . G 4 95.04 -4.195 14.423 1 18.63 ? O6 3GP 98 A 1 
HETATM 20 N N1 3GP . . . G 4 94.488 -3.539 16.49 1 17.89 ? N1 3GP 98 A 1 
HETATM 21 C C2 3GP . . . G 4 94.116 -2.544 17.356 1 17.72 ? C2 3GP 98 A 1 
HETATM 22 N N2 3GP . . . G 4 93.879 -2.826 18.635 1 18.57 ? N2 3GP 98 A 1 
HETATM 23 N N3 3GP . . . G 4 94.011 -1.265 16.897 1 17.97 ? N3 3GP 98 A 1 
HETATM 24 C C4 3GP . . . G 4 94.252 -0.996 15.587 1 17.98 ? C4 3GP 98 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           667 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           24 
#