data_3DH7
#
_model_server_result.job_id            fIb1XtzdtOuEJSXTh_rMfA 
_model_server_result.datetime_utc      '2024-12-29 13:29:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3dh7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":503}' 
#
_entry.id    3DH7 
#
_exptl.entry_id    3DH7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DH7 
_cell.length_a            142.528 
_cell.length_b            142.528 
_cell.length_c            109.682 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DH7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 314 n n 
P1 O2 POP sing 315 n n 
P1 O3 POP sing 316 n n 
P1 O POP sing 317 n n 
O2 HO2 POP sing 318 n n 
O P2 POP sing 319 n n 
P2 O4 POP doub 320 n n 
P2 O5 POP sing 321 n n 
P2 O6 POP sing 322 n n 
O5 HO5 POP sing 323 n n 
#
_atom_sites.entry_id                     3DH7 
_atom_sites.fract_transf_matrix[1][1]    0.007016 
_atom_sites.fract_transf_matrix[1][2]    0.004051 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 502 502 FMN FMN . 
F 2 FMN B 1 502 502 FMN FMN . 
G 3 POP B 1 503 503 POP DRG . 
H 2 FMN C 1 502 502 FMN FMN . 
I 2 FMN D 1 502 502 FMN FMN . 
J 3 POP D 1 503 503 POP DRG . 
K 4 HOH A 1 1001 1001 HOH HOH . 
K 4 HOH A 2 1002 1002 HOH HOH . 
K 4 HOH A 3 1003 1003 HOH HOH . 
K 4 HOH A 4 1005 1005 HOH HOH . 
K 4 HOH A 5 1007 1007 HOH HOH . 
K 4 HOH A 6 1008 1008 HOH HOH . 
K 4 HOH A 7 1010 1010 HOH HOH . 
K 4 HOH A 8 1012 1012 HOH HOH . 
K 4 HOH A 9 1016 1016 HOH HOH . 
K 4 HOH A 10 1017 1017 HOH HOH . 
K 4 HOH A 11 1041 1041 HOH HOH . 
K 4 HOH A 12 1048 1048 HOH HOH . 
K 4 HOH A 13 1053 1053 HOH HOH . 
K 4 HOH A 14 1054 1054 HOH HOH . 
K 4 HOH A 15 1055 1055 HOH HOH . 
K 4 HOH A 16 1056 1056 HOH HOH . 
K 4 HOH A 17 1060 1060 HOH HOH . 
K 4 HOH A 18 1063 1063 HOH HOH . 
K 4 HOH A 19 1064 1064 HOH HOH . 
K 4 HOH A 20 1065 1065 HOH HOH . 
K 4 HOH A 21 1077 1077 HOH HOH . 
K 4 HOH A 22 1081 1081 HOH HOH . 
K 4 HOH A 23 1087 1087 HOH HOH . 
K 4 HOH A 24 1093 1093 HOH HOH . 
K 4 HOH A 25 1096 1096 HOH HOH . 
K 4 HOH A 26 1098 1098 HOH HOH . 
K 4 HOH A 27 1102 1102 HOH HOH . 
K 4 HOH A 28 1104 1104 HOH HOH . 
K 4 HOH A 29 1123 1123 HOH HOH . 
K 4 HOH A 30 1125 1125 HOH HOH . 
K 4 HOH A 31 1133 1133 HOH HOH . 
K 4 HOH A 32 1136 1136 HOH HOH . 
K 4 HOH A 33 1139 1139 HOH HOH . 
K 4 HOH A 34 1150 1150 HOH HOH . 
K 4 HOH A 35 1157 1157 HOH HOH . 
K 4 HOH A 36 1163 1163 HOH HOH . 
K 4 HOH A 37 1165 1165 HOH HOH . 
K 4 HOH A 38 1171 1171 HOH HOH . 
K 4 HOH A 39 1178 1178 HOH HOH . 
K 4 HOH A 40 1180 1180 HOH HOH . 
K 4 HOH A 41 1184 1184 HOH HOH . 
K 4 HOH A 42 1185 1185 HOH HOH . 
K 4 HOH A 43 1188 1188 HOH HOH . 
K 4 HOH A 44 1190 1190 HOH HOH . 
K 4 HOH A 45 1191 1191 HOH HOH . 
K 4 HOH A 46 1198 1198 HOH HOH . 
K 4 HOH A 47 1207 1207 HOH HOH . 
K 4 HOH A 48 1208 1208 HOH HOH . 
K 4 HOH A 49 1215 1215 HOH HOH . 
K 4 HOH A 50 1217 1217 HOH HOH . 
K 4 HOH A 51 1220 1220 HOH HOH . 
K 4 HOH A 52 1224 1224 HOH HOH . 
K 4 HOH A 53 1226 1226 HOH HOH . 
K 4 HOH A 54 1227 1227 HOH HOH . 
L 4 HOH B 1 1011 1011 HOH HOH . 
L 4 HOH B 2 1019 1019 HOH HOH . 
L 4 HOH B 3 1025 1025 HOH HOH . 
L 4 HOH B 4 1027 1027 HOH HOH . 
L 4 HOH B 5 1037 1037 HOH HOH . 
L 4 HOH B 6 1042 1042 HOH HOH . 
L 4 HOH B 7 1045 1045 HOH HOH . 
L 4 HOH B 8 1049 1049 HOH HOH . 
L 4 HOH B 9 1050 1050 HOH HOH . 
L 4 HOH B 10 1052 1052 HOH HOH . 
L 4 HOH B 11 1062 1062 HOH HOH . 
L 4 HOH B 12 1066 1066 HOH HOH . 
L 4 HOH B 13 1070 1070 HOH HOH . 
L 4 HOH B 14 1074 1074 HOH HOH . 
L 4 HOH B 15 1083 1083 HOH HOH . 
L 4 HOH B 16 1084 1084 HOH HOH . 
L 4 HOH B 17 1089 1089 HOH HOH . 
L 4 HOH B 18 1091 1091 HOH HOH . 
L 4 HOH B 19 1095 1095 HOH HOH . 
L 4 HOH B 20 1097 1097 HOH HOH . 
L 4 HOH B 21 1099 1099 HOH HOH . 
L 4 HOH B 22 1100 1100 HOH HOH . 
L 4 HOH B 23 1113 1113 HOH HOH . 
L 4 HOH B 24 1114 1114 HOH HOH . 
L 4 HOH B 25 1115 1115 HOH HOH . 
L 4 HOH B 26 1119 1119 HOH HOH . 
L 4 HOH B 27 1124 1124 HOH HOH . 
L 4 HOH B 28 1126 1126 HOH HOH . 
L 4 HOH B 29 1137 1137 HOH HOH . 
L 4 HOH B 30 1138 1138 HOH HOH . 
L 4 HOH B 31 1142 1142 HOH HOH . 
L 4 HOH B 32 1143 1143 HOH HOH . 
L 4 HOH B 33 1145 1145 HOH HOH . 
L 4 HOH B 34 1151 1151 HOH HOH . 
L 4 HOH B 35 1153 1153 HOH HOH . 
L 4 HOH B 36 1173 1173 HOH HOH . 
L 4 HOH B 37 1174 1174 HOH HOH . 
L 4 HOH B 38 1177 1177 HOH HOH . 
L 4 HOH B 39 1183 1183 HOH HOH . 
L 4 HOH B 40 1202 1202 HOH HOH . 
L 4 HOH B 41 1205 1205 HOH HOH . 
L 4 HOH B 42 1206 1206 HOH HOH . 
L 4 HOH B 43 1211 1211 HOH HOH . 
L 4 HOH B 44 1212 1212 HOH HOH . 
L 4 HOH B 45 1218 1218 HOH HOH . 
L 4 HOH B 46 1221 1221 HOH HOH . 
L 4 HOH B 47 1223 1223 HOH HOH . 
L 4 HOH B 48 1228 1228 HOH HOH . 
M 4 HOH C 1 1004 1004 HOH HOH . 
M 4 HOH C 2 1006 1006 HOH HOH . 
M 4 HOH C 3 1009 1009 HOH HOH . 
M 4 HOH C 4 1015 1015 HOH HOH . 
M 4 HOH C 5 1018 1018 HOH HOH . 
M 4 HOH C 6 1021 1021 HOH HOH . 
M 4 HOH C 7 1022 1022 HOH HOH . 
M 4 HOH C 8 1023 1023 HOH HOH . 
M 4 HOH C 9 1026 1026 HOH HOH . 
M 4 HOH C 10 1028 1028 HOH HOH . 
M 4 HOH C 11 1029 1029 HOH HOH . 
M 4 HOH C 12 1032 1032 HOH HOH . 
M 4 HOH C 13 1035 1035 HOH HOH . 
M 4 HOH C 14 1036 1036 HOH HOH . 
M 4 HOH C 15 1038 1038 HOH HOH . 
M 4 HOH C 16 1044 1044 HOH HOH . 
M 4 HOH C 17 1046 1046 HOH HOH . 
M 4 HOH C 18 1058 1058 HOH HOH . 
M 4 HOH C 19 1061 1061 HOH HOH . 
M 4 HOH C 20 1071 1071 HOH HOH . 
M 4 HOH C 21 1079 1079 HOH HOH . 
M 4 HOH C 22 1080 1080 HOH HOH . 
M 4 HOH C 23 1082 1082 HOH HOH . 
M 4 HOH C 24 1085 1085 HOH HOH . 
M 4 HOH C 25 1088 1088 HOH HOH . 
M 4 HOH C 26 1094 1094 HOH HOH . 
M 4 HOH C 27 1101 1101 HOH HOH . 
M 4 HOH C 28 1103 1103 HOH HOH . 
M 4 HOH C 29 1105 1105 HOH HOH . 
M 4 HOH C 30 1106 1106 HOH HOH . 
M 4 HOH C 31 1107 1107 HOH HOH . 
M 4 HOH C 32 1108 1108 HOH HOH . 
M 4 HOH C 33 1110 1110 HOH HOH . 
M 4 HOH C 34 1117 1117 HOH HOH . 
M 4 HOH C 35 1122 1122 HOH HOH . 
M 4 HOH C 36 1128 1128 HOH HOH . 
M 4 HOH C 37 1129 1129 HOH HOH . 
M 4 HOH C 38 1130 1130 HOH HOH . 
M 4 HOH C 39 1135 1135 HOH HOH . 
M 4 HOH C 40 1140 1140 HOH HOH . 
M 4 HOH C 41 1152 1152 HOH HOH . 
M 4 HOH C 42 1155 1155 HOH HOH . 
M 4 HOH C 43 1158 1158 HOH HOH . 
M 4 HOH C 44 1159 1159 HOH HOH . 
M 4 HOH C 45 1161 1161 HOH HOH . 
M 4 HOH C 46 1166 1166 HOH HOH . 
M 4 HOH C 47 1169 1169 HOH HOH . 
M 4 HOH C 48 1170 1170 HOH HOH . 
M 4 HOH C 49 1175 1175 HOH HOH . 
M 4 HOH C 50 1176 1176 HOH HOH . 
M 4 HOH C 51 1187 1187 HOH HOH . 
M 4 HOH C 52 1194 1194 HOH HOH . 
M 4 HOH C 53 1195 1195 HOH HOH . 
M 4 HOH C 54 1197 1197 HOH HOH . 
M 4 HOH C 55 1201 1201 HOH HOH . 
M 4 HOH C 56 1204 1204 HOH HOH . 
M 4 HOH C 57 1216 1216 HOH HOH . 
M 4 HOH C 58 1219 1219 HOH HOH . 
M 4 HOH C 59 1225 1225 HOH HOH . 
N 4 HOH D 1 1013 1013 HOH HOH . 
N 4 HOH D 2 1014 1014 HOH HOH . 
N 4 HOH D 3 1020 1020 HOH HOH . 
N 4 HOH D 4 1024 1024 HOH HOH . 
N 4 HOH D 5 1030 1030 HOH HOH . 
N 4 HOH D 6 1031 1031 HOH HOH . 
N 4 HOH D 7 1033 1033 HOH HOH . 
N 4 HOH D 8 1034 1034 HOH HOH . 
N 4 HOH D 9 1039 1039 HOH HOH . 
N 4 HOH D 10 1040 1040 HOH HOH . 
N 4 HOH D 11 1043 1043 HOH HOH . 
N 4 HOH D 12 1047 1047 HOH HOH . 
N 4 HOH D 13 1051 1051 HOH HOH . 
N 4 HOH D 14 1057 1057 HOH HOH . 
N 4 HOH D 15 1059 1059 HOH HOH . 
N 4 HOH D 16 1067 1067 HOH HOH . 
N 4 HOH D 17 1068 1068 HOH HOH . 
N 4 HOH D 18 1069 1069 HOH HOH . 
N 4 HOH D 19 1072 1072 HOH HOH . 
N 4 HOH D 20 1073 1073 HOH HOH . 
N 4 HOH D 21 1075 1075 HOH HOH . 
N 4 HOH D 22 1076 1076 HOH HOH . 
N 4 HOH D 23 1078 1078 HOH HOH . 
N 4 HOH D 24 1086 1086 HOH HOH . 
N 4 HOH D 25 1090 1090 HOH HOH . 
N 4 HOH D 26 1092 1092 HOH HOH . 
N 4 HOH D 27 1109 1109 HOH HOH . 
N 4 HOH D 28 1111 1111 HOH HOH . 
N 4 HOH D 29 1112 1112 HOH HOH . 
N 4 HOH D 30 1116 1116 HOH HOH . 
N 4 HOH D 31 1118 1118 HOH HOH . 
N 4 HOH D 32 1120 1120 HOH HOH . 
N 4 HOH D 33 1121 1121 HOH HOH . 
N 4 HOH D 34 1127 1127 HOH HOH . 
N 4 HOH D 35 1131 1131 HOH HOH . 
N 4 HOH D 36 1132 1132 HOH HOH . 
N 4 HOH D 37 1134 1134 HOH HOH . 
N 4 HOH D 38 1141 1141 HOH HOH . 
N 4 HOH D 39 1144 1144 HOH HOH . 
N 4 HOH D 40 1146 1146 HOH HOH . 
N 4 HOH D 41 1147 1147 HOH HOH . 
N 4 HOH D 42 1148 1148 HOH HOH . 
N 4 HOH D 43 1149 1149 HOH HOH . 
N 4 HOH D 44 1154 1154 HOH HOH . 
N 4 HOH D 45 1156 1156 HOH HOH . 
N 4 HOH D 46 1160 1160 HOH HOH . 
N 4 HOH D 47 1162 1162 HOH HOH . 
N 4 HOH D 48 1164 1164 HOH HOH . 
N 4 HOH D 49 1167 1167 HOH HOH . 
N 4 HOH D 50 1168 1168 HOH HOH . 
N 4 HOH D 51 1172 1172 HOH HOH . 
N 4 HOH D 52 1179 1179 HOH HOH . 
N 4 HOH D 53 1181 1181 HOH HOH . 
N 4 HOH D 54 1182 1182 HOH HOH . 
N 4 HOH D 55 1186 1186 HOH HOH . 
N 4 HOH D 56 1189 1189 HOH HOH . 
N 4 HOH D 57 1192 1192 HOH HOH . 
N 4 HOH D 58 1193 1193 HOH HOH . 
N 4 HOH D 59 1196 1196 HOH HOH . 
N 4 HOH D 60 1199 1199 HOH HOH . 
N 4 HOH D 61 1200 1200 HOH HOH . 
N 4 HOH D 62 1203 1203 HOH HOH . 
N 4 HOH D 63 1209 1209 HOH HOH . 
N 4 HOH D 64 1210 1210 HOH HOH . 
N 4 HOH D 65 1213 1213 HOH HOH . 
N 4 HOH D 66 1214 1214 HOH HOH . 
N 4 HOH D 67 1222 1222 HOH HOH . 
N 4 HOH D 68 1229 1229 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . J 3 1.146 -14.69 4.786 1 93.65 ? P1 POP 503 D 1 
HETATM 2 O O1 POP . . . J 3 0.589 -14.77 6.207 1 91.69 ? O1 POP 503 D 1 
HETATM 3 O O2 POP . . . J 3 2.489 -14.007 4.562 1 93.91 ? O2 POP 503 D 1 
HETATM 4 O O3 POP . . . J 3 0.279 -13.655 3.884 1 93.4 ? O3 POP 503 D 1 
HETATM 5 O O POP . . . J 3 0.99 -16.176 4.015 1 88.55 ? O POP 503 D 1 
HETATM 6 P P2 POP . . . J 3 0.618 -17.703 4.552 1 83.46 ? P2 POP 503 D 1 
HETATM 7 O O4 POP . . . J 3 1.774 -18.537 4.065 1 82.79 ? O4 POP 503 D 1 
HETATM 8 O O5 POP . . . J 3 -0.63 -18.183 3.85 1 82.19 ? O5 POP 503 D 1 
HETATM 9 O O6 POP . . . J 3 0.466 -17.593 6.057 1 81.04 ? O6 POP 503 D 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#