data_3DI0
#
_model_server_result.job_id            e2Ac2L86y8tVqMf7e9fDig 
_model_server_result.datetime_utc      '2024-10-10 04:18:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3di0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    3DI0 
#
_exptl.entry_id    3DI0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3DI0 
_cell.length_a            118.686 
_cell.length_b            118.686 
_cell.length_c            179.156 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DI0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3DI0 
_atom_sites.fract_transf_matrix[1][1]    0.008426 
_atom_sites.fract_transf_matrix[1][2]    0.004865 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005582 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1002 1002 GOL GOL . 
D 2 GOL B 1 1001 1001 GOL GOL . 
E 3 HOH A 1 1003 1003 HOH HOH . 
E 3 HOH A 2 1004 1004 HOH HOH . 
E 3 HOH A 3 1005 1005 HOH HOH . 
E 3 HOH A 4 1006 1006 HOH HOH . 
E 3 HOH A 5 1007 1007 HOH HOH . 
E 3 HOH A 6 1008 1008 HOH HOH . 
E 3 HOH A 7 1009 1009 HOH HOH . 
E 3 HOH A 8 1010 1010 HOH HOH . 
E 3 HOH A 9 1011 1011 HOH HOH . 
E 3 HOH A 10 1012 1012 HOH HOH . 
E 3 HOH A 11 1013 1013 HOH HOH . 
E 3 HOH A 12 1014 1014 HOH HOH . 
E 3 HOH A 13 1015 1015 HOH HOH . 
E 3 HOH A 14 1016 1016 HOH HOH . 
E 3 HOH A 15 1017 1017 HOH HOH . 
E 3 HOH A 16 1018 1018 HOH HOH . 
E 3 HOH A 17 1019 1019 HOH HOH . 
E 3 HOH A 18 1020 1020 HOH HOH . 
E 3 HOH A 19 1021 1021 HOH HOH . 
E 3 HOH A 20 1022 1022 HOH HOH . 
E 3 HOH A 21 1023 1023 HOH HOH . 
E 3 HOH A 22 1024 1024 HOH HOH . 
E 3 HOH A 23 1025 1025 HOH HOH . 
E 3 HOH A 24 1026 1026 HOH HOH . 
E 3 HOH A 25 1027 1027 HOH HOH . 
E 3 HOH A 26 1028 1028 HOH HOH . 
E 3 HOH A 27 1029 1029 HOH HOH . 
E 3 HOH A 28 1030 1030 HOH HOH . 
E 3 HOH A 29 1031 1031 HOH HOH . 
E 3 HOH A 30 1032 1032 HOH HOH . 
E 3 HOH A 31 1033 1033 HOH HOH . 
E 3 HOH A 32 1034 1034 HOH HOH . 
E 3 HOH A 33 1035 1035 HOH HOH . 
E 3 HOH A 34 1036 1036 HOH HOH . 
E 3 HOH A 35 1037 1037 HOH HOH . 
E 3 HOH A 36 1038 1038 HOH HOH . 
E 3 HOH A 37 1039 1039 HOH HOH . 
E 3 HOH A 38 1040 1040 HOH HOH . 
E 3 HOH A 39 1041 1041 HOH HOH . 
E 3 HOH A 40 1042 1042 HOH HOH . 
E 3 HOH A 41 1043 1043 HOH HOH . 
E 3 HOH A 42 1044 1044 HOH HOH . 
E 3 HOH A 43 1045 1045 HOH HOH . 
E 3 HOH A 44 1046 1046 HOH HOH . 
E 3 HOH A 45 1047 1047 HOH HOH . 
E 3 HOH A 46 1048 1048 HOH HOH . 
E 3 HOH A 47 1049 1049 HOH HOH . 
E 3 HOH A 48 1050 1050 HOH HOH . 
E 3 HOH A 49 1051 1051 HOH HOH . 
E 3 HOH A 50 1052 1053 HOH HOH . 
E 3 HOH A 51 1053 1054 HOH HOH . 
E 3 HOH A 52 1054 1055 HOH HOH . 
E 3 HOH A 53 1055 1056 HOH HOH . 
E 3 HOH A 54 1056 1057 HOH HOH . 
E 3 HOH A 55 1057 1058 HOH HOH . 
E 3 HOH A 56 1058 1059 HOH HOH . 
E 3 HOH A 57 1059 1060 HOH HOH . 
E 3 HOH A 58 1060 1061 HOH HOH . 
E 3 HOH A 59 1061 1062 HOH HOH . 
E 3 HOH A 60 1062 1063 HOH HOH . 
E 3 HOH A 61 1063 1064 HOH HOH . 
E 3 HOH A 62 1064 1065 HOH HOH . 
E 3 HOH A 63 1065 1066 HOH HOH . 
E 3 HOH A 64 1066 1067 HOH HOH . 
E 3 HOH A 65 1067 1068 HOH HOH . 
E 3 HOH A 66 1068 1069 HOH HOH . 
E 3 HOH A 67 1069 1070 HOH HOH . 
E 3 HOH A 68 1070 1071 HOH HOH . 
E 3 HOH A 69 1071 1072 HOH HOH . 
E 3 HOH A 70 1072 1073 HOH HOH . 
E 3 HOH A 71 1073 1057 HOH HOH . 
F 3 HOH B 1 1052 1052 HOH HOH . 
F 3 HOH B 2 1053 1002 HOH HOH . 
F 3 HOH B 3 1054 1003 HOH HOH . 
F 3 HOH B 4 1055 1004 HOH HOH . 
F 3 HOH B 5 1056 1005 HOH HOH . 
F 3 HOH B 6 1057 1006 HOH HOH . 
F 3 HOH B 7 1058 1007 HOH HOH . 
F 3 HOH B 8 1059 1008 HOH HOH . 
F 3 HOH B 9 1060 1009 HOH HOH . 
F 3 HOH B 10 1061 1010 HOH HOH . 
F 3 HOH B 11 1062 1011 HOH HOH . 
F 3 HOH B 12 1063 1012 HOH HOH . 
F 3 HOH B 13 1064 1013 HOH HOH . 
F 3 HOH B 14 1065 1014 HOH HOH . 
F 3 HOH B 15 1066 1015 HOH HOH . 
F 3 HOH B 16 1067 1016 HOH HOH . 
F 3 HOH B 17 1068 1017 HOH HOH . 
F 3 HOH B 18 1069 1018 HOH HOH . 
F 3 HOH B 19 1070 1019 HOH HOH . 
F 3 HOH B 20 1071 1020 HOH HOH . 
F 3 HOH B 21 1072 1021 HOH HOH . 
F 3 HOH B 22 1073 1022 HOH HOH . 
F 3 HOH B 23 1074 1023 HOH HOH . 
F 3 HOH B 24 1075 1024 HOH HOH . 
F 3 HOH B 25 1076 1025 HOH HOH . 
F 3 HOH B 26 1077 1026 HOH HOH . 
F 3 HOH B 27 1078 1027 HOH HOH . 
F 3 HOH B 28 1079 1028 HOH HOH . 
F 3 HOH B 29 1080 1029 HOH HOH . 
F 3 HOH B 30 1081 1030 HOH HOH . 
F 3 HOH B 31 1082 1031 HOH HOH . 
F 3 HOH B 32 1083 1032 HOH HOH . 
F 3 HOH B 33 1084 1034 HOH HOH . 
F 3 HOH B 34 1085 1035 HOH HOH . 
F 3 HOH B 35 1086 1036 HOH HOH . 
F 3 HOH B 36 1087 1037 HOH HOH . 
F 3 HOH B 37 1088 1038 HOH HOH . 
F 3 HOH B 38 1089 1039 HOH HOH . 
F 3 HOH B 39 1090 1040 HOH HOH . 
F 3 HOH B 40 1091 1041 HOH HOH . 
F 3 HOH B 41 1092 1042 HOH HOH . 
F 3 HOH B 42 1093 1043 HOH HOH . 
F 3 HOH B 43 1094 1044 HOH HOH . 
F 3 HOH B 44 1095 1045 HOH HOH . 
F 3 HOH B 45 1096 1046 HOH HOH . 
F 3 HOH B 46 1097 1047 HOH HOH . 
F 3 HOH B 47 1098 1048 HOH HOH . 
F 3 HOH B 48 1099 1049 HOH HOH . 
F 3 HOH B 49 1100 1050 HOH HOH . 
F 3 HOH B 50 1101 1051 HOH HOH . 
F 3 HOH B 51 1102 1052 HOH HOH . 
F 3 HOH B 52 1103 1053 HOH HOH . 
F 3 HOH B 53 1104 1054 HOH HOH . 
F 3 HOH B 54 1105 1055 HOH HOH . 
F 3 HOH B 55 1106 1056 HOH HOH . 
F 3 HOH B 56 1107 1058 HOH HOH . 
F 3 HOH B 57 1108 1059 HOH HOH . 
F 3 HOH B 58 1109 1060 HOH HOH . 
F 3 HOH B 59 1110 1061 HOH HOH . 
F 3 HOH B 60 1111 1062 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -37.335 -30.987 4.489 1 32.3 ? C1 GOL 1002 A 1 
HETATM 2 O O1 GOL . . . C 2 -37.531 -32.06 3.602 1 35.91 ? O1 GOL 1002 A 1 
HETATM 3 C C2 GOL . . . C 2 -37.266 -29.73 3.669 1 37.06 ? C2 GOL 1002 A 1 
HETATM 4 O O2 GOL . . . C 2 -38.599 -29.454 3.323 1 39.55 ? O2 GOL 1002 A 1 
HETATM 5 C C3 GOL . . . C 2 -36.989 -28.78 4.767 1 40.57 ? C3 GOL 1002 A 1 
HETATM 6 O O3 GOL . . . C 2 -38.075 -29.206 5.558 1 44.11 ? O3 GOL 1002 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#