data_3DI2 # _model_server_result.job_id YwG4waXCcgKTboyOCVinGQ _model_server_result.datetime_utc '2025-03-21 04:43:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3di2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":340}' # _entry.id 3DI2 # _exptl.entry_id 3DI2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.1 _cell.angle_gamma 90 _cell.entry_id 3DI2 _cell.length_a 47.202 _cell.length_b 113.021 _cell.length_c 87.534 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DI2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 34 1_555 A SG CYS 131 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 49 A CYS 47 1_555 A SG CYS 143 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 26 B CYS 22 1_555 B SG CYS 41 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 58 B CYS 54 1_555 B SG CYS 66 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 B SG CYS 92 B CYS 88 1_555 B SG CYS 102 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 C SG CYS 36 C CYS 34 1_555 C SG CYS 131 C CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 49 C CYS 47 1_555 C SG CYS 143 C CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 D SG CYS 26 D CYS 22 1_555 D SG CYS 41 D CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf9 D SG CYS 58 D CYS 54 1_555 D SG CYS 66 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 D SG CYS 92 D CYS 88 1_555 D SG CYS 102 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3DI2 _atom_sites.fract_transf_matrix[1][1] 0.021186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005716 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 1PE A 1 340 340 1PE 1PE . F 4 HOH A 1 153 153 HOH HOH . F 4 HOH A 2 154 154 HOH HOH . F 4 HOH A 3 155 155 HOH HOH . F 4 HOH A 4 156 156 HOH HOH . F 4 HOH A 5 158 158 HOH HOH . F 4 HOH A 6 159 159 HOH HOH . F 4 HOH A 7 161 161 HOH HOH . F 4 HOH A 8 162 162 HOH HOH . F 4 HOH A 9 163 163 HOH HOH . G 4 HOH B 1 220 220 HOH HOH . G 4 HOH B 2 221 221 HOH HOH . G 4 HOH B 3 222 222 HOH HOH . G 4 HOH B 4 223 223 HOH HOH . G 4 HOH B 5 225 225 HOH HOH . G 4 HOH B 6 226 226 HOH HOH . G 4 HOH B 7 227 227 HOH HOH . G 4 HOH B 8 228 228 HOH HOH . G 4 HOH B 9 229 229 HOH HOH . G 4 HOH B 10 230 230 HOH HOH . G 4 HOH B 11 231 231 HOH HOH . G 4 HOH B 12 232 232 HOH HOH . G 4 HOH B 13 233 233 HOH HOH . G 4 HOH B 14 234 234 HOH HOH . H 4 HOH C 1 153 153 HOH HOH . I 4 HOH D 1 220 220 HOH HOH . I 4 HOH D 2 221 221 HOH HOH . I 4 HOH D 3 222 222 HOH HOH . I 4 HOH D 4 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 3 15.551 73.011 63.74 1 66.83 ? OH2 1PE 340 A 1 HETATM 2 C C12 1PE . . . E 3 14.17 72.744 63.462 1 70.04 ? C12 1PE 340 A 1 HETATM 3 C C22 1PE . . . E 3 13.32 74.013 63.651 1 71.64 ? C22 1PE 340 A 1 HETATM 4 O OH3 1PE . . . E 3 13.659 75.011 62.671 1 73.44 ? OH3 1PE 340 A 1 HETATM 5 C C13 1PE . . . E 3 13.09 77.277 61.946 1 73.96 ? C13 1PE 340 A 1 HETATM 6 C C23 1PE . . . E 3 12.814 76.134 62.934 1 73.67 ? C23 1PE 340 A 1 HETATM 7 O OH4 1PE . . . E 3 12.805 78.509 62.621 1 74.76 ? OH4 1PE 340 A 1 HETATM 8 C C14 1PE . . . E 3 12.746 80.906 62.452 1 74.05 ? C14 1PE 340 A 1 HETATM 9 C C24 1PE . . . E 3 13.046 79.589 61.722 1 74.45 ? C24 1PE 340 A 1 HETATM 10 O OH5 1PE . . . E 3 12.235 81.877 61.528 1 74.24 ? OH5 1PE 340 A 1 HETATM 11 C C15 1PE . . . E 3 11.424 84.179 61.361 1 71.63 ? C15 1PE 340 A 1 HETATM 12 C C25 1PE . . . E 3 11.979 83.079 62.28 1 73.25 ? C25 1PE 340 A 1 HETATM 13 O OH6 1PE . . . E 3 12.032 84.087 60.069 1 70.81 ? OH6 1PE 340 A 1 HETATM 14 C C16 1PE . . . E 3 12.093 85.089 57.863 1 68.96 ? C16 1PE 340 A 1 HETATM 15 C C26 1PE . . . E 3 11.479 85.134 59.265 1 70.63 ? C26 1PE 340 A 1 HETATM 16 O OH7 1PE . . . E 3 11.204 84.406 56.975 1 67.94 ? OH7 1PE 340 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #