data_3DI6
#
_model_server_result.job_id            ODXeluN6lwTM32dYluie_g 
_model_server_result.datetime_utc      '2025-08-31 06:42:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3di6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":562}' 
#
_entry.id    3DI6 
#
_exptl.entry_id    3DI6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.741 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(4-chloro-2-fluoro-3-phenoxybenzyl)pyridazin-3(2H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3DI6 
_cell.length_a            117.046 
_cell.length_b            153.51 
_cell.length_c            154.551 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3DI6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 117.046 0 77.2755 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H12 Cl F N2 O2' 
_chem_comp.formula_weight    330.741 
_chem_comp.id                PDZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(4-chloro-2-fluoro-3-phenoxybenzyl)pyridazin-3(2H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PDZ doub 237 n y 
C1 C6 PDZ sing 238 n y 
C2 C3 PDZ sing 239 n y 
C3 C4 PDZ doub 240 n y 
C4 C5 PDZ sing 241 n y 
C5 C6 PDZ doub 242 n y 
C5 O7 PDZ sing 243 n n 
O7 C8 PDZ sing 244 n n 
C8 C9 PDZ doub 245 n y 
C8 C13 PDZ sing 246 n y 
C9 C10 PDZ sing 247 n y 
C9 CL15 PDZ sing 248 n n 
C10 C11 PDZ doub 249 n y 
C11 C12 PDZ sing 250 n y 
C12 C13 PDZ doub 251 n y 
C12 C14 PDZ sing 252 n n 
C13 F16 PDZ sing 253 n n 
C14 C17 PDZ sing 254 n n 
C17 C18 PDZ sing 255 n n 
C17 N22 PDZ doub 256 n n 
C18 C19 PDZ doub 257 n n 
C19 C20 PDZ sing 258 n n 
C20 N21 PDZ sing 259 n n 
C20 O23 PDZ doub 260 n n 
N21 N22 PDZ sing 261 n n 
C1 H1 PDZ sing 262 n n 
C2 H2 PDZ sing 263 n n 
C3 H3 PDZ sing 264 n n 
C4 H4 PDZ sing 265 n n 
C6 H6 PDZ sing 266 n n 
C10 H10 PDZ sing 267 n n 
C11 H11 PDZ sing 268 n n 
C14 H14 PDZ sing 269 n n 
C14 H14A PDZ sing 270 n n 
C18 H18 PDZ sing 271 n n 
C19 H19 PDZ sing 272 n n 
N21 HN21 PDZ sing 273 n n 
#
_atom_sites.entry_id                     3DI6 
_atom_sites.fract_transf_matrix[1][1]    0.008544 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006514 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00647 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PDZ A 1 562 1 PDZ PDZ . 
D 4 HOH A 1 563 4 HOH HOH . 
D 4 HOH A 2 564 5 HOH HOH . 
D 4 HOH A 3 565 6 HOH HOH . 
D 4 HOH A 4 566 7 HOH HOH . 
D 4 HOH A 5 567 8 HOH HOH . 
D 4 HOH A 6 568 9 HOH HOH . 
D 4 HOH A 7 569 13 HOH HOH . 
D 4 HOH A 8 570 14 HOH HOH . 
D 4 HOH A 9 571 17 HOH HOH . 
D 4 HOH A 10 572 19 HOH HOH . 
D 4 HOH A 11 573 21 HOH HOH . 
D 4 HOH A 12 574 23 HOH HOH . 
D 4 HOH A 13 575 25 HOH HOH . 
D 4 HOH A 14 576 26 HOH HOH . 
D 4 HOH A 15 577 28 HOH HOH . 
D 4 HOH A 16 578 29 HOH HOH . 
D 4 HOH A 17 579 30 HOH HOH . 
D 4 HOH A 18 580 32 HOH HOH . 
D 4 HOH A 19 581 34 HOH HOH . 
D 4 HOH A 20 582 35 HOH HOH . 
D 4 HOH A 21 583 36 HOH HOH . 
D 4 HOH A 22 584 40 HOH HOH . 
D 4 HOH A 23 585 42 HOH HOH . 
D 4 HOH A 24 586 43 HOH HOH . 
D 4 HOH A 25 587 46 HOH HOH . 
D 4 HOH A 26 588 47 HOH HOH . 
D 4 HOH A 27 589 49 HOH HOH . 
D 4 HOH A 28 590 50 HOH HOH . 
D 4 HOH A 29 591 58 HOH HOH . 
D 4 HOH A 30 592 59 HOH HOH . 
D 4 HOH A 31 593 61 HOH HOH . 
D 4 HOH A 32 594 65 HOH HOH . 
D 4 HOH A 33 595 67 HOH HOH . 
D 4 HOH A 34 596 70 HOH HOH . 
D 4 HOH A 35 597 71 HOH HOH . 
D 4 HOH A 36 598 74 HOH HOH . 
D 4 HOH A 37 599 75 HOH HOH . 
D 4 HOH A 38 600 77 HOH HOH . 
D 4 HOH A 39 601 79 HOH HOH . 
D 4 HOH A 40 602 82 HOH HOH . 
D 4 HOH A 41 603 84 HOH HOH . 
D 4 HOH A 42 604 86 HOH HOH . 
D 4 HOH A 43 605 87 HOH HOH . 
D 4 HOH A 44 606 88 HOH HOH . 
D 4 HOH A 45 607 93 HOH HOH . 
D 4 HOH A 46 608 96 HOH HOH . 
D 4 HOH A 47 609 104 HOH HOH . 
D 4 HOH A 48 610 106 HOH HOH . 
D 4 HOH A 49 611 114 HOH HOH . 
D 4 HOH A 50 612 119 HOH HOH . 
D 4 HOH A 51 613 121 HOH HOH . 
D 4 HOH A 52 614 127 HOH HOH . 
D 4 HOH A 53 615 128 HOH HOH . 
D 4 HOH A 54 616 134 HOH HOH . 
D 4 HOH A 55 617 136 HOH HOH . 
E 4 HOH B 1 441 1 HOH HOH . 
E 4 HOH B 2 442 2 HOH HOH . 
E 4 HOH B 3 443 10 HOH HOH . 
E 4 HOH B 4 444 11 HOH HOH . 
E 4 HOH B 5 445 12 HOH HOH . 
E 4 HOH B 6 446 16 HOH HOH . 
E 4 HOH B 7 447 18 HOH HOH . 
E 4 HOH B 8 448 22 HOH HOH . 
E 4 HOH B 9 449 27 HOH HOH . 
E 4 HOH B 10 450 31 HOH HOH . 
E 4 HOH B 11 451 33 HOH HOH . 
E 4 HOH B 12 452 37 HOH HOH . 
E 4 HOH B 13 453 38 HOH HOH . 
E 4 HOH B 14 454 41 HOH HOH . 
E 4 HOH B 15 455 44 HOH HOH . 
E 4 HOH B 16 456 45 HOH HOH . 
E 4 HOH B 17 457 51 HOH HOH . 
E 4 HOH B 18 458 55 HOH HOH . 
E 4 HOH B 19 459 63 HOH HOH . 
E 4 HOH B 20 460 66 HOH HOH . 
E 4 HOH B 21 461 68 HOH HOH . 
E 4 HOH B 22 462 69 HOH HOH . 
E 4 HOH B 23 463 72 HOH HOH . 
E 4 HOH B 24 464 73 HOH HOH . 
E 4 HOH B 25 465 76 HOH HOH . 
E 4 HOH B 26 466 80 HOH HOH . 
E 4 HOH B 27 467 85 HOH HOH . 
E 4 HOH B 28 468 90 HOH HOH . 
E 4 HOH B 29 469 91 HOH HOH . 
E 4 HOH B 30 470 92 HOH HOH . 
E 4 HOH B 31 471 94 HOH HOH . 
E 4 HOH B 32 472 95 HOH HOH . 
E 4 HOH B 33 473 98 HOH HOH . 
E 4 HOH B 34 474 99 HOH HOH . 
E 4 HOH B 35 475 103 HOH HOH . 
E 4 HOH B 36 476 109 HOH HOH . 
E 4 HOH B 37 477 112 HOH HOH . 
E 4 HOH B 38 478 113 HOH HOH . 
E 4 HOH B 39 479 120 HOH HOH . 
E 4 HOH B 40 480 122 HOH HOH . 
E 4 HOH B 41 481 130 HOH HOH . 
E 4 HOH B 42 482 137 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PDZ . . . C 3 48.661 62.232 21.291 1 40.03 ? C1 PDZ 562 A 1 
HETATM 2 C C2 PDZ . . . C 3 48.315 60.952 20.878 1 40.52 ? C2 PDZ 562 A 1 
HETATM 3 C C3 PDZ . . . C 3 47.904 60.724 19.57 1 39.84 ? C3 PDZ 562 A 1 
HETATM 4 C C4 PDZ . . . C 3 47.833 61.773 18.666 1 40.02 ? C4 PDZ 562 A 1 
HETATM 5 C C5 PDZ . . . C 3 48.179 63.054 19.083 1 40.28 ? C5 PDZ 562 A 1 
HETATM 6 C C6 PDZ . . . C 3 48.59 63.28 20.39 1 40.09 ? C6 PDZ 562 A 1 
HETATM 7 O O7 PDZ . . . C 3 48.117 64.104 18.23 1 42.81 ? O7 PDZ 562 A 1 
HETATM 8 C C8 PDZ . . . C 3 48.546 63.985 16.956 1 44.24 ? C8 PDZ 562 A 1 
HETATM 9 C C9 PDZ . . . C 3 47.624 63.964 15.932 1 45.45 ? C9 PDZ 562 A 1 
HETATM 10 C C10 PDZ . . . C 3 48.014 63.838 14.603 1 45.17 ? C10 PDZ 562 A 1 
HETATM 11 C C11 PDZ . . . C 3 49.368 63.736 14.329 1 44.92 ? C11 PDZ 562 A 1 
HETATM 12 C C12 PDZ . . . C 3 50.304 63.753 15.361 1 45.41 ? C12 PDZ 562 A 1 
HETATM 13 C C13 PDZ . . . C 3 49.894 63.89 16.68 1 45.32 ? C13 PDZ 562 A 1 
HETATM 14 C C14 PDZ . . . C 3 51.771 63.666 15.045 1 45.93 ? C14 PDZ 562 A 1 
HETATM 15 CL CL15 PDZ . . . C 3 45.968 64.098 16.383 1 46.15 ? CL15 PDZ 562 A 1 
HETATM 16 F F16 PDZ . . . C 3 50.765 63.915 17.712 1 45.94 ? F16 PDZ 562 A 1 
HETATM 17 C C17 PDZ . . . C 3 52.156 65.105 14.797 1 47 ? C17 PDZ 562 A 1 
HETATM 18 C C18 PDZ . . . C 3 52.775 65.864 15.814 1 46.51 ? C18 PDZ 562 A 1 
HETATM 19 C C19 PDZ . . . C 3 53.087 67.169 15.546 1 46.7 ? C19 PDZ 562 A 1 
HETATM 20 C C20 PDZ . . . C 3 52.75 67.667 14.264 1 47.02 ? C20 PDZ 562 A 1 
HETATM 21 N N21 PDZ . . . C 3 52.152 66.867 13.36 1 46.9 ? N21 PDZ 562 A 1 
HETATM 22 N N22 PDZ . . . C 3 51.873 65.647 13.634 1 46.85 ? N22 PDZ 562 A 1 
HETATM 23 O O23 PDZ . . . C 3 53.001 68.817 13.957 1 48.12 ? O23 PDZ 562 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#