data_3DIE # _model_server_result.job_id CMkmuSauFKEFJa5v1PBfNw _model_server_result.datetime_utc '2024-12-26 19:48:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3die # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":106}' # _entry.id 3DIE # _exptl.entry_id 3DIE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DIE _cell.length_a 88.703 _cell.length_b 84.451 _cell.length_c 34.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DIE _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 29 1_555 A SG CYS 34 A CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 B SG CYS 31 B CYS 29 1_555 B SG CYS 34 B CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 2 A HIS 0 1_555 F FE FE . A FE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A OE1 GLU 42 A GLU 40 1_555 C CD CD . A CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A OE2 GLU 42 A GLU 40 1_555 C CD CD . A CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 A OD1 ASP 82 A ASP 80 1_555 D CD CD . A CD 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 A OD2 ASP 82 A ASP 80 1_555 D CD CD . A CD 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc6 A O LEU 106 A LEU 104 1_555 E CD CD . A CD 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc7 A OXT LEU 106 A LEU 104 1_555 E CD CD . A CD 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 D CD CD . A CD 106 1_555 I O HOH . A HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc9 D CD CD . A CD 106 1_555 I O HOH . A HOH 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 E CD CD . A CD 107 1_555 I O HOH . A HOH 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 F FE FE . A FE 108 1_555 I O HOH . A HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc12 F FE FE . A FE 108 1_555 B OE2 GLU 43 B GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc13 B OE2 GLU 43 B GLU 41 1_555 H FE FE . B FE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc14 B OE1 GLU 49 B GLU 47 1_555 G CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc15 B OE2 GLU 49 B GLU 47 1_555 G CD CD . B CD 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc16 G CD CD . B CD 105 1_555 J O HOH . B HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc17 H FE FE . B FE 106 1_555 J O HOH . B HOH 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc18 H FE FE . B FE 106 1_555 J O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc19 H FE FE . B FE 106 1_555 J O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc20 H FE FE . B FE 106 1_555 J O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DIE _atom_sites.fract_transf_matrix[1][1] 0.011274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 105 1 CD CD . D 2 CD A 1 106 2 CD CD . E 2 CD A 1 107 3 CD CD . F 3 FE A 1 108 1 FE FE . G 2 CD B 1 105 4 CD CD . H 3 FE B 1 106 2 FE FE . I 4 HOH A 1 109 2 HOH HOH . I 4 HOH A 2 110 4 HOH HOH . I 4 HOH A 3 111 8 HOH HOH . I 4 HOH A 4 112 9 HOH HOH . I 4 HOH A 5 113 10 HOH HOH . I 4 HOH A 6 114 13 HOH HOH . I 4 HOH A 7 115 15 HOH HOH . I 4 HOH A 8 116 16 HOH HOH . I 4 HOH A 9 117 17 HOH HOH . I 4 HOH A 10 118 18 HOH HOH . I 4 HOH A 11 119 19 HOH HOH . I 4 HOH A 12 120 24 HOH HOH . I 4 HOH A 13 121 26 HOH HOH . I 4 HOH A 14 122 27 HOH HOH . I 4 HOH A 15 123 28 HOH HOH . I 4 HOH A 16 124 29 HOH HOH . I 4 HOH A 17 125 33 HOH HOH . I 4 HOH A 18 126 34 HOH HOH . I 4 HOH A 19 127 36 HOH HOH . I 4 HOH A 20 128 37 HOH HOH . I 4 HOH A 21 129 38 HOH HOH . I 4 HOH A 22 130 39 HOH HOH . I 4 HOH A 23 131 40 HOH HOH . I 4 HOH A 24 132 41 HOH HOH . I 4 HOH A 25 133 42 HOH HOH . I 4 HOH A 26 134 44 HOH HOH . I 4 HOH A 27 135 45 HOH HOH . I 4 HOH A 28 136 46 HOH HOH . I 4 HOH A 29 137 47 HOH HOH . I 4 HOH A 30 138 50 HOH HOH . I 4 HOH A 31 139 52 HOH HOH . I 4 HOH A 32 140 53 HOH HOH . I 4 HOH A 33 141 54 HOH HOH . I 4 HOH A 34 142 60 HOH HOH . I 4 HOH A 35 143 61 HOH HOH . I 4 HOH A 36 144 69 HOH HOH . I 4 HOH A 37 145 70 HOH HOH . I 4 HOH A 38 146 71 HOH HOH . I 4 HOH A 39 147 72 HOH HOH . I 4 HOH A 40 148 74 HOH HOH . I 4 HOH A 41 149 75 HOH HOH . I 4 HOH A 42 150 77 HOH HOH . I 4 HOH A 43 151 78 HOH HOH . I 4 HOH A 44 152 81 HOH HOH . I 4 HOH A 45 153 82 HOH HOH . I 4 HOH A 46 154 83 HOH HOH . I 4 HOH A 47 155 85 HOH HOH . I 4 HOH A 48 156 87 HOH HOH . I 4 HOH A 49 157 88 HOH HOH . I 4 HOH A 50 158 91 HOH HOH . I 4 HOH A 51 159 95 HOH HOH . I 4 HOH A 52 160 96 HOH HOH . I 4 HOH A 53 161 97 HOH HOH . I 4 HOH A 54 162 99 HOH HOH . I 4 HOH A 55 163 102 HOH HOH . I 4 HOH A 56 164 103 HOH HOH . I 4 HOH A 57 165 104 HOH HOH . I 4 HOH A 58 166 105 HOH HOH . I 4 HOH A 59 167 109 HOH HOH . I 4 HOH A 60 168 110 HOH HOH . I 4 HOH A 61 169 111 HOH HOH . I 4 HOH A 62 170 112 HOH HOH . I 4 HOH A 63 171 113 HOH HOH . I 4 HOH A 64 172 115 HOH HOH . I 4 HOH A 65 173 116 HOH HOH . I 4 HOH A 66 174 117 HOH HOH . I 4 HOH A 67 175 118 HOH HOH . I 4 HOH A 68 176 121 HOH HOH . I 4 HOH A 69 177 123 HOH HOH . I 4 HOH A 70 178 124 HOH HOH . I 4 HOH A 71 179 125 HOH HOH . I 4 HOH A 72 180 126 HOH HOH . I 4 HOH A 73 181 127 HOH HOH . I 4 HOH A 74 182 128 HOH HOH . I 4 HOH A 75 183 129 HOH HOH . I 4 HOH A 76 184 130 HOH HOH . I 4 HOH A 77 185 131 HOH HOH . I 4 HOH A 78 186 132 HOH HOH . I 4 HOH A 79 187 135 HOH HOH . I 4 HOH A 80 188 136 HOH HOH . I 4 HOH A 81 189 137 HOH HOH . I 4 HOH A 82 190 141 HOH HOH . I 4 HOH A 83 191 20 HOH HOH . I 4 HOH A 84 192 58 HOH HOH . I 4 HOH A 85 193 93 HOH HOH . J 4 HOH B 1 148 73 HOH HOH . J 4 HOH B 2 149 80 HOH HOH . J 4 HOH B 3 150 1 HOH HOH . J 4 HOH B 4 151 3 HOH HOH . J 4 HOH B 5 152 5 HOH HOH . J 4 HOH B 6 153 6 HOH HOH . J 4 HOH B 7 154 7 HOH HOH . J 4 HOH B 8 155 11 HOH HOH . J 4 HOH B 9 156 12 HOH HOH . J 4 HOH B 10 157 14 HOH HOH . J 4 HOH B 11 158 21 HOH HOH . J 4 HOH B 12 159 22 HOH HOH . J 4 HOH B 13 160 23 HOH HOH . J 4 HOH B 14 161 25 HOH HOH . J 4 HOH B 15 162 30 HOH HOH . J 4 HOH B 16 163 31 HOH HOH . J 4 HOH B 17 164 32 HOH HOH . J 4 HOH B 18 165 35 HOH HOH . J 4 HOH B 19 166 43 HOH HOH . J 4 HOH B 20 167 48 HOH HOH . J 4 HOH B 21 168 49 HOH HOH . J 4 HOH B 22 169 51 HOH HOH . J 4 HOH B 23 170 55 HOH HOH . J 4 HOH B 24 171 56 HOH HOH . J 4 HOH B 25 172 57 HOH HOH . J 4 HOH B 26 173 59 HOH HOH . J 4 HOH B 27 174 62 HOH HOH . J 4 HOH B 28 175 63 HOH HOH . J 4 HOH B 29 176 64 HOH HOH . J 4 HOH B 30 177 65 HOH HOH . J 4 HOH B 31 178 66 HOH HOH . J 4 HOH B 32 179 67 HOH HOH . J 4 HOH B 33 180 68 HOH HOH . J 4 HOH B 34 181 76 HOH HOH . J 4 HOH B 35 182 79 HOH HOH . J 4 HOH B 36 183 84 HOH HOH . J 4 HOH B 37 184 86 HOH HOH . J 4 HOH B 38 185 89 HOH HOH . J 4 HOH B 39 186 90 HOH HOH . J 4 HOH B 40 187 92 HOH HOH . J 4 HOH B 41 188 94 HOH HOH . J 4 HOH B 42 189 98 HOH HOH . J 4 HOH B 43 190 100 HOH HOH . J 4 HOH B 44 191 101 HOH HOH . J 4 HOH B 45 192 106 HOH HOH . J 4 HOH B 46 193 107 HOH HOH . J 4 HOH B 47 194 108 HOH HOH . J 4 HOH B 48 195 114 HOH HOH . J 4 HOH B 49 196 119 HOH HOH . J 4 HOH B 50 197 120 HOH HOH . J 4 HOH B 51 198 122 HOH HOH . J 4 HOH B 52 199 133 HOH HOH . J 4 HOH B 53 200 134 HOH HOH . J 4 HOH B 54 201 138 HOH HOH . J 4 HOH B 55 202 139 HOH HOH . J 4 HOH B 56 203 140 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.16 _atom_site.Cartn_y 14.544 _atom_site.Cartn_z 20.819 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 11.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 106 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #