data_3DJ1 # _model_server_result.job_id b8Zugi7vugl0wiot2xVFXQ _model_server_result.datetime_utc '2024-12-04 17:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dj1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 3DJ1 # _exptl.entry_id 3DJ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DJ1 _cell.length_a 86.757 _cell.length_b 86.757 _cell.length_c 80.321 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DJ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,C,D 3 1,2,3 B,E 3 4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -43.3785 -75.133766 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 43.3785 -75.133766 0 4 'crystal symmetry operation' 4_444 x-1/3,y-2/3,z-2/3 1 0 0 0 1 0 0 0 1 0 -50.089177 -53.547333 5 'crystal symmetry operation' 5_444 -y-1/3,x-y-2/3,z-2/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 -50.089177 -53.547333 6 'crystal symmetry operation' 6_444 -x+y-1/3,-x-2/3,z-2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 -50.089177 -53.547333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 277 n n S O2 SO4 doub 278 n n S O3 SO4 sing 279 n n S O4 SO4 sing 280 n n # _atom_sites.entry_id 3DJ1 _atom_sites.fract_transf_matrix[1][1] 0.011526 _atom_sites.fract_transf_matrix[1][2] 0.006655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 125 1 SO4 SO4 . D 3 HOH A 1 126 8 HOH HOH . D 3 HOH A 2 127 12 HOH HOH . D 3 HOH A 3 128 14 HOH HOH . D 3 HOH A 4 129 16 HOH HOH . D 3 HOH A 5 130 17 HOH HOH . D 3 HOH A 6 131 22 HOH HOH . D 3 HOH A 7 132 23 HOH HOH . D 3 HOH A 8 133 25 HOH HOH . D 3 HOH A 9 134 27 HOH HOH . D 3 HOH A 10 135 32 HOH HOH . D 3 HOH A 11 136 33 HOH HOH . D 3 HOH A 12 137 35 HOH HOH . D 3 HOH A 13 138 36 HOH HOH . D 3 HOH A 14 139 37 HOH HOH . D 3 HOH A 15 140 38 HOH HOH . D 3 HOH A 16 141 39 HOH HOH . D 3 HOH A 17 142 40 HOH HOH . D 3 HOH A 18 143 42 HOH HOH . D 3 HOH A 19 144 48 HOH HOH . D 3 HOH A 20 145 52 HOH HOH . D 3 HOH A 21 146 53 HOH HOH . D 3 HOH A 22 147 56 HOH HOH . D 3 HOH A 23 148 57 HOH HOH . D 3 HOH A 24 149 58 HOH HOH . D 3 HOH A 25 150 59 HOH HOH . D 3 HOH A 26 151 60 HOH HOH . D 3 HOH A 27 152 63 HOH HOH . D 3 HOH A 28 153 65 HOH HOH . D 3 HOH A 29 154 72 HOH HOH . D 3 HOH A 30 155 75 HOH HOH . D 3 HOH A 31 156 77 HOH HOH . D 3 HOH A 32 157 78 HOH HOH . D 3 HOH A 33 158 80 HOH HOH . D 3 HOH A 34 159 82 HOH HOH . D 3 HOH A 35 160 90 HOH HOH . D 3 HOH A 36 161 98 HOH HOH . D 3 HOH A 37 162 103 HOH HOH . D 3 HOH A 38 163 108 HOH HOH . D 3 HOH A 39 164 114 HOH HOH . D 3 HOH A 40 165 121 HOH HOH . D 3 HOH A 41 166 125 HOH HOH . D 3 HOH A 42 167 129 HOH HOH . D 3 HOH A 43 168 132 HOH HOH . D 3 HOH A 44 169 135 HOH HOH . D 3 HOH A 45 170 138 HOH HOH . D 3 HOH A 46 171 139 HOH HOH . D 3 HOH A 47 172 140 HOH HOH . D 3 HOH A 48 173 156 HOH HOH . D 3 HOH A 49 174 160 HOH HOH . D 3 HOH A 50 175 161 HOH HOH . D 3 HOH A 51 176 163 HOH HOH . D 3 HOH A 52 177 168 HOH HOH . D 3 HOH A 53 178 172 HOH HOH . D 3 HOH A 54 179 173 HOH HOH . D 3 HOH A 55 180 313 HOH HOH . D 3 HOH A 56 181 316 HOH HOH . D 3 HOH A 57 182 319 HOH HOH . D 3 HOH A 58 183 321 HOH HOH . D 3 HOH A 59 184 322 HOH HOH . D 3 HOH A 60 185 323 HOH HOH . D 3 HOH A 61 186 324 HOH HOH . D 3 HOH A 62 187 325 HOH HOH . D 3 HOH A 63 188 326 HOH HOH . D 3 HOH A 64 189 327 HOH HOH . D 3 HOH A 65 190 328 HOH HOH . D 3 HOH A 66 191 329 HOH HOH . D 3 HOH A 67 192 331 HOH HOH . D 3 HOH A 68 193 332 HOH HOH . D 3 HOH A 69 194 341 HOH HOH . D 3 HOH A 70 195 342 HOH HOH . D 3 HOH A 71 196 344 HOH HOH . E 3 HOH B 1 125 4 HOH HOH . E 3 HOH B 2 126 5 HOH HOH . E 3 HOH B 3 127 6 HOH HOH . E 3 HOH B 4 128 7 HOH HOH . E 3 HOH B 5 129 9 HOH HOH . E 3 HOH B 6 130 11 HOH HOH . E 3 HOH B 7 131 13 HOH HOH . E 3 HOH B 8 132 18 HOH HOH . E 3 HOH B 9 133 20 HOH HOH . E 3 HOH B 10 134 21 HOH HOH . E 3 HOH B 11 135 24 HOH HOH . E 3 HOH B 12 136 26 HOH HOH . E 3 HOH B 13 137 28 HOH HOH . E 3 HOH B 14 138 30 HOH HOH . E 3 HOH B 15 139 31 HOH HOH . E 3 HOH B 16 140 43 HOH HOH . E 3 HOH B 17 141 44 HOH HOH . E 3 HOH B 18 142 46 HOH HOH . E 3 HOH B 19 143 50 HOH HOH . E 3 HOH B 20 144 62 HOH HOH . E 3 HOH B 21 145 64 HOH HOH . E 3 HOH B 22 146 66 HOH HOH . E 3 HOH B 23 147 69 HOH HOH . E 3 HOH B 24 148 70 HOH HOH . E 3 HOH B 25 149 71 HOH HOH . E 3 HOH B 26 150 74 HOH HOH . E 3 HOH B 27 151 79 HOH HOH . E 3 HOH B 28 152 83 HOH HOH . E 3 HOH B 29 153 84 HOH HOH . E 3 HOH B 30 154 85 HOH HOH . E 3 HOH B 31 155 87 HOH HOH . E 3 HOH B 32 156 100 HOH HOH . E 3 HOH B 33 157 102 HOH HOH . E 3 HOH B 34 158 104 HOH HOH . E 3 HOH B 35 159 106 HOH HOH . E 3 HOH B 36 160 107 HOH HOH . E 3 HOH B 37 161 110 HOH HOH . E 3 HOH B 38 162 111 HOH HOH . E 3 HOH B 39 163 113 HOH HOH . E 3 HOH B 40 164 115 HOH HOH . E 3 HOH B 41 165 118 HOH HOH . E 3 HOH B 42 166 120 HOH HOH . E 3 HOH B 43 167 127 HOH HOH . E 3 HOH B 44 168 130 HOH HOH . E 3 HOH B 45 169 142 HOH HOH . E 3 HOH B 46 170 146 HOH HOH . E 3 HOH B 47 171 152 HOH HOH . E 3 HOH B 48 172 166 HOH HOH . E 3 HOH B 49 173 169 HOH HOH . E 3 HOH B 50 174 171 HOH HOH . E 3 HOH B 51 175 310 HOH HOH . E 3 HOH B 52 176 311 HOH HOH . E 3 HOH B 53 177 315 HOH HOH . E 3 HOH B 54 178 318 HOH HOH . E 3 HOH B 55 179 320 HOH HOH . E 3 HOH B 56 180 333 HOH HOH . E 3 HOH B 57 181 334 HOH HOH . E 3 HOH B 58 182 335 HOH HOH . E 3 HOH B 59 183 336 HOH HOH . E 3 HOH B 60 184 337 HOH HOH . E 3 HOH B 61 185 338 HOH HOH . E 3 HOH B 62 186 339 HOH HOH . E 3 HOH B 63 187 340 HOH HOH . E 3 HOH B 64 188 343 HOH HOH . E 3 HOH B 65 189 345 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 2.251 -38.053 -23.539 1 43.81 ? S SO4 125 A 1 HETATM 2 O O1 SO4 . . . C 2 3.397 -38.382 -24.48 1 47.53 ? O1 SO4 125 A 1 HETATM 3 O O2 SO4 . . . C 2 1.039 -37.944 -24.455 1 46.24 ? O2 SO4 125 A 1 HETATM 4 O O3 SO4 . . . C 2 2.064 -39.124 -22.627 1 45.52 ? O3 SO4 125 A 1 HETATM 5 O O4 SO4 . . . C 2 2.509 -36.797 -22.937 1 49.42 ? O4 SO4 125 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 108 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 441 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #