data_3DJ4 # _model_server_result.job_id Ox5IiT3NOU2FSwE1wUEqLA _model_server_result.datetime_utc '2024-11-17 13:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dj4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":496}' # _entry.id 3DJ4 # _exptl.entry_id 3DJ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DJ4 _cell.length_a 78.6 _cell.length_b 78.6 _cell.length_c 278 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 78.6 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 39.3 68.069597 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 114 A ASP 114 1_555 B MG MG . A MG 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A OD1 ASN 239 A ASN 239 1_555 B MG MG . A MG 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc3 B MG MG . A MG 496 1_555 D O2A UD1 . A UD1 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc4 B MG MG . A MG 496 1_555 D O1B UD1 . A UD1 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc5 B MG MG . A MG 496 1_555 E O HOH . A HOH 4120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 B MG MG . A MG 496 1_555 E O HOH . A HOH 4133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DJ4 _atom_sites.fract_transf_matrix[1][1] 0.012723 _atom_sites.fract_transf_matrix[1][2] 0.007345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 496 496 MG MG . C 3 CO A 1 497 497 CO CO . D 4 UD1 A 1 4000 4000 UD1 UD1 . E 5 HOH A 1 4001 4001 HOH HOH . E 5 HOH A 2 4002 4002 HOH HOH . E 5 HOH A 3 4003 4003 HOH HOH . E 5 HOH A 4 4004 4004 HOH HOH . E 5 HOH A 5 4005 4005 HOH HOH . E 5 HOH A 6 4006 4006 HOH HOH . E 5 HOH A 7 4007 4007 HOH HOH . E 5 HOH A 8 4008 4008 HOH HOH . E 5 HOH A 9 4009 4009 HOH HOH . E 5 HOH A 10 4010 4010 HOH HOH . E 5 HOH A 11 4011 4011 HOH HOH . E 5 HOH A 12 4012 4012 HOH HOH . E 5 HOH A 13 4013 4013 HOH HOH . E 5 HOH A 14 4014 4014 HOH HOH . E 5 HOH A 15 4015 4015 HOH HOH . E 5 HOH A 16 4016 4016 HOH HOH . E 5 HOH A 17 4017 4017 HOH HOH . E 5 HOH A 18 4018 4018 HOH HOH . E 5 HOH A 19 4019 4019 HOH HOH . E 5 HOH A 20 4020 4020 HOH HOH . E 5 HOH A 21 4021 4021 HOH HOH . E 5 HOH A 22 4022 4022 HOH HOH . E 5 HOH A 23 4023 4023 HOH HOH . E 5 HOH A 24 4024 4024 HOH HOH . E 5 HOH A 25 4025 4025 HOH HOH . E 5 HOH A 26 4026 4026 HOH HOH . E 5 HOH A 27 4027 4027 HOH HOH . E 5 HOH A 28 4028 4028 HOH HOH . E 5 HOH A 29 4029 4029 HOH HOH . E 5 HOH A 30 4030 4030 HOH HOH . E 5 HOH A 31 4031 4031 HOH HOH . E 5 HOH A 32 4032 4032 HOH HOH . E 5 HOH A 33 4033 4033 HOH HOH . E 5 HOH A 34 4034 4034 HOH HOH . E 5 HOH A 35 4035 4035 HOH HOH . E 5 HOH A 36 4036 4036 HOH HOH . E 5 HOH A 37 4037 4037 HOH HOH . E 5 HOH A 38 4038 4038 HOH HOH . E 5 HOH A 39 4039 4039 HOH HOH . E 5 HOH A 40 4040 4040 HOH HOH . E 5 HOH A 41 4041 4041 HOH HOH . E 5 HOH A 42 4042 4042 HOH HOH . E 5 HOH A 43 4043 4043 HOH HOH . E 5 HOH A 44 4044 4044 HOH HOH . E 5 HOH A 45 4045 4045 HOH HOH . E 5 HOH A 46 4046 4046 HOH HOH . E 5 HOH A 47 4047 4047 HOH HOH . E 5 HOH A 48 4048 4048 HOH HOH . E 5 HOH A 49 4049 4049 HOH HOH . E 5 HOH A 50 4050 4050 HOH HOH . E 5 HOH A 51 4051 4051 HOH HOH . E 5 HOH A 52 4052 4052 HOH HOH . E 5 HOH A 53 4053 4053 HOH HOH . E 5 HOH A 54 4054 4054 HOH HOH . E 5 HOH A 55 4055 4055 HOH HOH . E 5 HOH A 56 4056 4056 HOH HOH . E 5 HOH A 57 4057 4057 HOH HOH . E 5 HOH A 58 4058 4058 HOH HOH . E 5 HOH A 59 4059 4059 HOH HOH . E 5 HOH A 60 4060 4060 HOH HOH . E 5 HOH A 61 4061 4061 HOH HOH . E 5 HOH A 62 4062 4062 HOH HOH . E 5 HOH A 63 4063 4063 HOH HOH . E 5 HOH A 64 4064 4064 HOH HOH . E 5 HOH A 65 4065 4065 HOH HOH . E 5 HOH A 66 4066 4066 HOH HOH . E 5 HOH A 67 4067 4067 HOH HOH . E 5 HOH A 68 4068 4068 HOH HOH . E 5 HOH A 69 4069 4069 HOH HOH . E 5 HOH A 70 4070 4070 HOH HOH . E 5 HOH A 71 4071 4071 HOH HOH . E 5 HOH A 72 4072 4072 HOH HOH . E 5 HOH A 73 4073 4073 HOH HOH . E 5 HOH A 74 4074 4074 HOH HOH . E 5 HOH A 75 4075 4075 HOH HOH . E 5 HOH A 76 4076 4076 HOH HOH . E 5 HOH A 77 4077 4077 HOH HOH . E 5 HOH A 78 4078 4078 HOH HOH . E 5 HOH A 79 4079 4079 HOH HOH . E 5 HOH A 80 4080 4080 HOH HOH . E 5 HOH A 81 4081 4081 HOH HOH . E 5 HOH A 82 4082 4082 HOH HOH . E 5 HOH A 83 4083 4083 HOH HOH . E 5 HOH A 84 4084 4084 HOH HOH . E 5 HOH A 85 4085 4085 HOH HOH . E 5 HOH A 86 4086 4086 HOH HOH . E 5 HOH A 87 4087 4087 HOH HOH . E 5 HOH A 88 4088 4088 HOH HOH . E 5 HOH A 89 4089 4089 HOH HOH . E 5 HOH A 90 4090 4090 HOH HOH . E 5 HOH A 91 4091 4091 HOH HOH . E 5 HOH A 92 4092 4092 HOH HOH . E 5 HOH A 93 4093 4093 HOH HOH . E 5 HOH A 94 4094 4094 HOH HOH . E 5 HOH A 95 4095 4095 HOH HOH . E 5 HOH A 96 4096 4096 HOH HOH . E 5 HOH A 97 4097 4097 HOH HOH . E 5 HOH A 98 4098 4098 HOH HOH . E 5 HOH A 99 4099 4099 HOH HOH . E 5 HOH A 100 4100 4100 HOH HOH . E 5 HOH A 101 4101 4101 HOH HOH . E 5 HOH A 102 4102 4102 HOH HOH . E 5 HOH A 103 4103 4103 HOH HOH . E 5 HOH A 104 4104 4104 HOH HOH . E 5 HOH A 105 4105 4105 HOH HOH . E 5 HOH A 106 4106 4106 HOH HOH . E 5 HOH A 107 4107 4107 HOH HOH . E 5 HOH A 108 4108 4108 HOH HOH . E 5 HOH A 109 4109 4109 HOH HOH . E 5 HOH A 110 4110 4110 HOH HOH . E 5 HOH A 111 4111 4111 HOH HOH . E 5 HOH A 112 4112 4112 HOH HOH . E 5 HOH A 113 4113 4113 HOH HOH . E 5 HOH A 114 4114 4114 HOH HOH . E 5 HOH A 115 4115 4115 HOH HOH . E 5 HOH A 116 4116 4116 HOH HOH . E 5 HOH A 117 4117 4117 HOH HOH . E 5 HOH A 118 4118 4118 HOH HOH . E 5 HOH A 119 4119 4119 HOH HOH . E 5 HOH A 120 4120 4120 HOH HOH . E 5 HOH A 121 4121 4121 HOH HOH . E 5 HOH A 122 4122 4122 HOH HOH . E 5 HOH A 123 4123 4123 HOH HOH . E 5 HOH A 124 4124 4124 HOH HOH . E 5 HOH A 125 4125 4125 HOH HOH . E 5 HOH A 126 4126 4126 HOH HOH . E 5 HOH A 127 4127 4127 HOH HOH . E 5 HOH A 128 4128 4128 HOH HOH . E 5 HOH A 129 4129 4129 HOH HOH . E 5 HOH A 130 4130 4130 HOH HOH . E 5 HOH A 131 4131 4131 HOH HOH . E 5 HOH A 132 4132 4132 HOH HOH . E 5 HOH A 133 4133 4133 HOH HOH . E 5 HOH A 134 4134 4134 HOH HOH . E 5 HOH A 135 4135 4135 HOH HOH . E 5 HOH A 136 4136 4136 HOH HOH . E 5 HOH A 137 4137 4137 HOH HOH . E 5 HOH A 138 4138 4138 HOH HOH . E 5 HOH A 139 4139 4139 HOH HOH . E 5 HOH A 140 4140 4140 HOH HOH . E 5 HOH A 141 4141 4141 HOH HOH . E 5 HOH A 142 4142 4142 HOH HOH . E 5 HOH A 143 4143 4143 HOH HOH . E 5 HOH A 144 4144 4144 HOH HOH . E 5 HOH A 145 4145 4145 HOH HOH . E 5 HOH A 146 4146 4146 HOH HOH . E 5 HOH A 147 4147 4147 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.93 _atom_site.Cartn_y 31.507 _atom_site.Cartn_z 37.784 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 496 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #