data_3DJC # _model_server_result.job_id rPRrpHF5JTKz14XHANQhNg _model_server_result.datetime_utc '2025-04-17 01:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3djc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":265}' # _entry.id 3DJC # _exptl.entry_id 3DJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.24 _cell.angle_gamma 90 _cell.entry_id 3DJC _cell.length_a 95.394 _cell.length_b 134.571 _cell.length_c 134.404 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression G,H,I,J,K,L,T,U,V,W,DA,EA,FA,GA,HA,IA 1 1 A,B,C,D,E,F,M,N,O,P,Q,R,S,X,Y,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3DJC _atom_sites.fract_transf_matrix[1][1] 0.010483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 GOL A 1 265 265 GOL GOL . N 2 GOL A 1 266 266 GOL GOL . O 2 GOL B 1 265 265 GOL GOL . P 2 GOL C 1 265 265 GOL GOL . Q 2 GOL C 1 266 266 GOL GOL . R 2 GOL E 1 265 265 GOL GOL . S 2 GOL E 1 266 266 GOL GOL . T 2 GOL H 1 265 265 GOL GOL . U 2 GOL H 1 266 266 GOL GOL . V 2 GOL J 1 265 265 GOL GOL . W 2 GOL L 1 265 265 GOL GOL . X 3 HOH A 1 267 267 HOH HOH . X 3 HOH A 2 268 268 HOH HOH . X 3 HOH A 3 269 269 HOH HOH . X 3 HOH A 4 270 270 HOH HOH . X 3 HOH A 5 271 271 HOH HOH . X 3 HOH A 6 272 272 HOH HOH . X 3 HOH A 7 273 273 HOH HOH . X 3 HOH A 8 274 274 HOH HOH . X 3 HOH A 9 275 275 HOH HOH . X 3 HOH A 10 276 276 HOH HOH . X 3 HOH A 11 277 277 HOH HOH . X 3 HOH A 12 278 278 HOH HOH . X 3 HOH A 13 279 279 HOH HOH . X 3 HOH A 14 280 280 HOH HOH . X 3 HOH A 15 281 281 HOH HOH . X 3 HOH A 16 282 282 HOH HOH . X 3 HOH A 17 283 283 HOH HOH . X 3 HOH A 18 284 284 HOH HOH . X 3 HOH A 19 285 285 HOH HOH . X 3 HOH A 20 286 286 HOH HOH . X 3 HOH A 21 287 287 HOH HOH . X 3 HOH A 22 288 288 HOH HOH . X 3 HOH A 23 289 289 HOH HOH . X 3 HOH A 24 290 290 HOH HOH . X 3 HOH A 25 291 291 HOH HOH . X 3 HOH A 26 292 292 HOH HOH . X 3 HOH A 27 293 293 HOH HOH . X 3 HOH A 28 294 294 HOH HOH . X 3 HOH A 29 295 295 HOH HOH . X 3 HOH A 30 296 296 HOH HOH . X 3 HOH A 31 297 297 HOH HOH . X 3 HOH A 32 298 298 HOH HOH . X 3 HOH A 33 299 299 HOH HOH . X 3 HOH A 34 300 300 HOH HOH . X 3 HOH A 35 301 301 HOH HOH . X 3 HOH A 36 302 302 HOH HOH . X 3 HOH A 37 303 303 HOH HOH . X 3 HOH A 38 304 304 HOH HOH . X 3 HOH A 39 305 305 HOH HOH . Y 3 HOH B 1 266 266 HOH HOH . Y 3 HOH B 2 267 267 HOH HOH . Y 3 HOH B 3 268 268 HOH HOH . Y 3 HOH B 4 269 269 HOH HOH . Y 3 HOH B 5 270 270 HOH HOH . Y 3 HOH B 6 271 271 HOH HOH . Y 3 HOH B 7 272 272 HOH HOH . Y 3 HOH B 8 273 273 HOH HOH . Y 3 HOH B 9 274 274 HOH HOH . Y 3 HOH B 10 275 275 HOH HOH . Y 3 HOH B 11 276 276 HOH HOH . Y 3 HOH B 12 277 277 HOH HOH . Y 3 HOH B 13 278 278 HOH HOH . Y 3 HOH B 14 279 279 HOH HOH . Y 3 HOH B 15 280 280 HOH HOH . Y 3 HOH B 16 281 281 HOH HOH . Y 3 HOH B 17 282 282 HOH HOH . Y 3 HOH B 18 283 283 HOH HOH . Y 3 HOH B 19 284 284 HOH HOH . Y 3 HOH B 20 285 285 HOH HOH . Y 3 HOH B 21 286 286 HOH HOH . Y 3 HOH B 22 287 287 HOH HOH . Y 3 HOH B 23 288 288 HOH HOH . Y 3 HOH B 24 289 289 HOH HOH . Y 3 HOH B 25 290 290 HOH HOH . Y 3 HOH B 26 291 291 HOH HOH . Y 3 HOH B 27 292 292 HOH HOH . Y 3 HOH B 28 293 293 HOH HOH . Y 3 HOH B 29 294 294 HOH HOH . Y 3 HOH B 30 295 295 HOH HOH . Y 3 HOH B 31 296 296 HOH HOH . Y 3 HOH B 32 297 297 HOH HOH . Y 3 HOH B 33 298 298 HOH HOH . Y 3 HOH B 34 299 299 HOH HOH . Y 3 HOH B 35 300 300 HOH HOH . Y 3 HOH B 36 301 301 HOH HOH . Y 3 HOH B 37 302 302 HOH HOH . Z 3 HOH C 1 267 267 HOH HOH . Z 3 HOH C 2 268 268 HOH HOH . Z 3 HOH C 3 269 269 HOH HOH . Z 3 HOH C 4 270 270 HOH HOH . Z 3 HOH C 5 271 271 HOH HOH . Z 3 HOH C 6 272 272 HOH HOH . Z 3 HOH C 7 273 273 HOH HOH . Z 3 HOH C 8 274 274 HOH HOH . Z 3 HOH C 9 275 275 HOH HOH . Z 3 HOH C 10 276 276 HOH HOH . Z 3 HOH C 11 277 277 HOH HOH . Z 3 HOH C 12 278 278 HOH HOH . Z 3 HOH C 13 279 279 HOH HOH . Z 3 HOH C 14 280 280 HOH HOH . Z 3 HOH C 15 281 281 HOH HOH . Z 3 HOH C 16 282 282 HOH HOH . Z 3 HOH C 17 283 283 HOH HOH . Z 3 HOH C 18 284 284 HOH HOH . Z 3 HOH C 19 285 285 HOH HOH . Z 3 HOH C 20 286 286 HOH HOH . Z 3 HOH C 21 287 287 HOH HOH . Z 3 HOH C 22 288 288 HOH HOH . Z 3 HOH C 23 289 289 HOH HOH . Z 3 HOH C 24 290 290 HOH HOH . Z 3 HOH C 25 291 291 HOH HOH . Z 3 HOH C 26 292 292 HOH HOH . Z 3 HOH C 27 293 293 HOH HOH . Z 3 HOH C 28 294 294 HOH HOH . Z 3 HOH C 29 295 295 HOH HOH . Z 3 HOH C 30 296 296 HOH HOH . Z 3 HOH C 31 297 297 HOH HOH . Z 3 HOH C 32 298 298 HOH HOH . Z 3 HOH C 33 299 299 HOH HOH . AA 3 HOH D 1 265 265 HOH HOH . AA 3 HOH D 2 266 266 HOH HOH . AA 3 HOH D 3 267 267 HOH HOH . AA 3 HOH D 4 268 268 HOH HOH . AA 3 HOH D 5 269 269 HOH HOH . AA 3 HOH D 6 270 270 HOH HOH . AA 3 HOH D 7 271 271 HOH HOH . AA 3 HOH D 8 272 272 HOH HOH . AA 3 HOH D 9 273 273 HOH HOH . AA 3 HOH D 10 274 274 HOH HOH . AA 3 HOH D 11 275 275 HOH HOH . AA 3 HOH D 12 276 276 HOH HOH . AA 3 HOH D 13 277 277 HOH HOH . AA 3 HOH D 14 278 278 HOH HOH . AA 3 HOH D 15 279 279 HOH HOH . AA 3 HOH D 16 280 280 HOH HOH . AA 3 HOH D 17 281 281 HOH HOH . AA 3 HOH D 18 282 282 HOH HOH . AA 3 HOH D 19 283 283 HOH HOH . AA 3 HOH D 20 284 284 HOH HOH . AA 3 HOH D 21 285 285 HOH HOH . AA 3 HOH D 22 286 286 HOH HOH . AA 3 HOH D 23 287 287 HOH HOH . AA 3 HOH D 24 288 288 HOH HOH . AA 3 HOH D 25 289 289 HOH HOH . AA 3 HOH D 26 290 290 HOH HOH . AA 3 HOH D 27 291 291 HOH HOH . AA 3 HOH D 28 292 292 HOH HOH . BA 3 HOH E 1 267 267 HOH HOH . BA 3 HOH E 2 268 268 HOH HOH . BA 3 HOH E 3 269 269 HOH HOH . BA 3 HOH E 4 270 270 HOH HOH . BA 3 HOH E 5 271 271 HOH HOH . BA 3 HOH E 6 272 272 HOH HOH . BA 3 HOH E 7 273 273 HOH HOH . BA 3 HOH E 8 274 274 HOH HOH . BA 3 HOH E 9 275 275 HOH HOH . BA 3 HOH E 10 276 276 HOH HOH . BA 3 HOH E 11 277 277 HOH HOH . BA 3 HOH E 12 278 278 HOH HOH . BA 3 HOH E 13 279 279 HOH HOH . BA 3 HOH E 14 280 280 HOH HOH . BA 3 HOH E 15 281 281 HOH HOH . BA 3 HOH E 16 282 282 HOH HOH . BA 3 HOH E 17 283 283 HOH HOH . BA 3 HOH E 18 284 284 HOH HOH . BA 3 HOH E 19 285 285 HOH HOH . BA 3 HOH E 20 286 286 HOH HOH . BA 3 HOH E 21 287 287 HOH HOH . BA 3 HOH E 22 288 288 HOH HOH . BA 3 HOH E 23 289 289 HOH HOH . BA 3 HOH E 24 290 290 HOH HOH . BA 3 HOH E 25 291 291 HOH HOH . BA 3 HOH E 26 292 292 HOH HOH . BA 3 HOH E 27 293 293 HOH HOH . BA 3 HOH E 28 294 294 HOH HOH . BA 3 HOH E 29 295 295 HOH HOH . BA 3 HOH E 30 296 296 HOH HOH . CA 3 HOH F 1 265 265 HOH HOH . CA 3 HOH F 2 266 266 HOH HOH . CA 3 HOH F 3 267 267 HOH HOH . CA 3 HOH F 4 268 268 HOH HOH . CA 3 HOH F 5 269 269 HOH HOH . CA 3 HOH F 6 270 270 HOH HOH . CA 3 HOH F 7 271 271 HOH HOH . CA 3 HOH F 8 272 272 HOH HOH . CA 3 HOH F 9 273 273 HOH HOH . CA 3 HOH F 10 274 274 HOH HOH . CA 3 HOH F 11 275 275 HOH HOH . CA 3 HOH F 12 276 276 HOH HOH . CA 3 HOH F 13 277 277 HOH HOH . CA 3 HOH F 14 278 278 HOH HOH . CA 3 HOH F 15 279 279 HOH HOH . CA 3 HOH F 16 280 280 HOH HOH . CA 3 HOH F 17 281 281 HOH HOH . CA 3 HOH F 18 282 282 HOH HOH . CA 3 HOH F 19 283 283 HOH HOH . CA 3 HOH F 20 284 284 HOH HOH . CA 3 HOH F 21 285 285 HOH HOH . CA 3 HOH F 22 286 286 HOH HOH . CA 3 HOH F 23 287 287 HOH HOH . CA 3 HOH F 24 288 288 HOH HOH . CA 3 HOH F 25 289 289 HOH HOH . CA 3 HOH F 26 290 290 HOH HOH . CA 3 HOH F 27 291 291 HOH HOH . DA 3 HOH G 1 265 265 HOH HOH . DA 3 HOH G 2 266 266 HOH HOH . DA 3 HOH G 3 267 267 HOH HOH . DA 3 HOH G 4 268 268 HOH HOH . DA 3 HOH G 5 269 269 HOH HOH . DA 3 HOH G 6 270 270 HOH HOH . DA 3 HOH G 7 271 271 HOH HOH . DA 3 HOH G 8 272 272 HOH HOH . DA 3 HOH G 9 273 273 HOH HOH . DA 3 HOH G 10 274 274 HOH HOH . DA 3 HOH G 11 275 275 HOH HOH . DA 3 HOH G 12 276 276 HOH HOH . DA 3 HOH G 13 277 277 HOH HOH . DA 3 HOH G 14 278 278 HOH HOH . DA 3 HOH G 15 279 279 HOH HOH . DA 3 HOH G 16 280 280 HOH HOH . DA 3 HOH G 17 281 281 HOH HOH . DA 3 HOH G 18 282 282 HOH HOH . EA 3 HOH H 1 267 267 HOH HOH . EA 3 HOH H 2 268 268 HOH HOH . EA 3 HOH H 3 269 269 HOH HOH . EA 3 HOH H 4 270 270 HOH HOH . EA 3 HOH H 5 271 271 HOH HOH . EA 3 HOH H 6 272 272 HOH HOH . EA 3 HOH H 7 273 273 HOH HOH . EA 3 HOH H 8 274 274 HOH HOH . EA 3 HOH H 9 275 275 HOH HOH . EA 3 HOH H 10 276 276 HOH HOH . FA 3 HOH I 1 265 265 HOH HOH . FA 3 HOH I 2 266 266 HOH HOH . FA 3 HOH I 3 267 267 HOH HOH . FA 3 HOH I 4 268 268 HOH HOH . FA 3 HOH I 5 269 269 HOH HOH . FA 3 HOH I 6 270 270 HOH HOH . FA 3 HOH I 7 271 271 HOH HOH . FA 3 HOH I 8 272 272 HOH HOH . FA 3 HOH I 9 273 273 HOH HOH . FA 3 HOH I 10 274 274 HOH HOH . FA 3 HOH I 11 275 275 HOH HOH . FA 3 HOH I 12 276 276 HOH HOH . FA 3 HOH I 13 277 277 HOH HOH . FA 3 HOH I 14 278 278 HOH HOH . FA 3 HOH I 15 279 279 HOH HOH . FA 3 HOH I 16 280 280 HOH HOH . FA 3 HOH I 17 281 281 HOH HOH . FA 3 HOH I 18 282 282 HOH HOH . FA 3 HOH I 19 283 283 HOH HOH . FA 3 HOH I 20 284 284 HOH HOH . FA 3 HOH I 21 285 285 HOH HOH . FA 3 HOH I 22 286 286 HOH HOH . FA 3 HOH I 23 287 287 HOH HOH . FA 3 HOH I 24 288 288 HOH HOH . FA 3 HOH I 25 289 289 HOH HOH . FA 3 HOH I 26 290 290 HOH HOH . FA 3 HOH I 27 291 291 HOH HOH . GA 3 HOH J 1 266 266 HOH HOH . GA 3 HOH J 2 267 267 HOH HOH . GA 3 HOH J 3 268 268 HOH HOH . GA 3 HOH J 4 269 269 HOH HOH . GA 3 HOH J 5 270 270 HOH HOH . GA 3 HOH J 6 271 271 HOH HOH . GA 3 HOH J 7 272 272 HOH HOH . GA 3 HOH J 8 273 273 HOH HOH . GA 3 HOH J 9 274 274 HOH HOH . GA 3 HOH J 10 275 275 HOH HOH . GA 3 HOH J 11 276 276 HOH HOH . GA 3 HOH J 12 277 277 HOH HOH . HA 3 HOH K 1 265 265 HOH HOH . HA 3 HOH K 2 266 266 HOH HOH . HA 3 HOH K 3 267 267 HOH HOH . HA 3 HOH K 4 268 268 HOH HOH . HA 3 HOH K 5 269 269 HOH HOH . HA 3 HOH K 6 270 270 HOH HOH . HA 3 HOH K 7 271 271 HOH HOH . HA 3 HOH K 8 272 272 HOH HOH . HA 3 HOH K 9 273 273 HOH HOH . HA 3 HOH K 10 274 274 HOH HOH . HA 3 HOH K 11 275 275 HOH HOH . HA 3 HOH K 12 276 276 HOH HOH . HA 3 HOH K 13 277 277 HOH HOH . HA 3 HOH K 14 278 278 HOH HOH . HA 3 HOH K 15 279 279 HOH HOH . IA 3 HOH L 1 266 266 HOH HOH . IA 3 HOH L 2 267 267 HOH HOH . IA 3 HOH L 3 268 268 HOH HOH . IA 3 HOH L 4 269 269 HOH HOH . IA 3 HOH L 5 270 270 HOH HOH . IA 3 HOH L 6 271 271 HOH HOH . IA 3 HOH L 7 272 272 HOH HOH . IA 3 HOH L 8 273 273 HOH HOH . IA 3 HOH L 9 274 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 2 28.042 4.457 49.847 1 58.65 ? C1 GOL 265 B 1 HETATM 2 O O1 GOL . . . O 2 26.686 4.451 49.451 1 36.72 ? O1 GOL 265 B 1 HETATM 3 C C2 GOL . . . O 2 28.261 3.657 51.133 1 60.71 ? C2 GOL 265 B 1 HETATM 4 O O2 GOL . . . O 2 27.13 2.877 51.454 1 64.88 ? O2 GOL 265 B 1 HETATM 5 C C3 GOL . . . O 2 28.548 4.586 52.304 1 34.28 ? C3 GOL 265 B 1 HETATM 6 O O3 GOL . . . O 2 29.777 5.253 52.118 1 66.59 ? O3 GOL 265 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #