data_3DJM # _model_server_result.job_id EhBBFCNkDxz-MnFf3HEYPA _model_server_result.datetime_utc '2024-11-13 03:36:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3djm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":116}' # _entry.id 3DJM # _exptl.entry_id 3DJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DJM _cell.length_a 66.403 _cell.length_b 93.087 _cell.length_c 128.016 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,K 1 1 B,G,L 2 1 C,H,M 3 1 D,N 4 1 E,I,J,O 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 3 1_555 A N ASN 5 A ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C ALA 52 A ALA 51 1_555 A N MSE 53 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C MSE 53 A MSE 52 1_555 A N VAL 54 A VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C VAL 54 A VAL 53 1_555 A N MSE 55 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C MSE 55 A MSE 54 1_555 A N PHE 56 A PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 B C MSE 2 B MSE 1 1_555 B N GLN 3 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 B C GLN 3 B GLN 2 1_555 B N MSE 4 B MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale8 B C MSE 4 B MSE 3 1_555 B N ASN 5 B ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C ALA 52 B ALA 51 1_555 B N MSE 53 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale10 B C MSE 53 B MSE 52 1_555 B N VAL 54 B VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C VAL 54 B VAL 53 1_555 B N MSE 55 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale12 B C MSE 55 B MSE 54 1_555 B N PHE 56 B PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 C C ALA 52 C ALA 51 1_555 C N MSE 53 C MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale14 C C MSE 53 C MSE 52 1_555 C N VAL 54 C VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 C C VAL 54 C VAL 53 1_555 C N MSE 55 C MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale16 C C MSE 55 C MSE 54 1_555 C N PHE 56 C PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale17 D C ALA 52 D ALA 51 1_555 D N MSE 53 D MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 D C MSE 53 D MSE 52 1_555 D N VAL 54 D VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale19 D C VAL 54 D VAL 53 1_555 D N MSE 55 D MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale20 D C MSE 55 D MSE 54 1_555 D N PHE 56 D PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale21 E C ALA 52 E ALA 51 1_555 E N MSE 53 E MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 E C MSE 53 E MSE 52 1_555 E N VAL 54 E VAL 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 E C VAL 54 E VAL 53 1_555 E N MSE 55 E MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale24 E C MSE 55 E MSE 54 1_555 E N PHE 56 E PHE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 3DJM _atom_sites.fract_transf_matrix[1][1] 0.01506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010743 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EDO A 1 116 2 EDO EDO . G 2 EDO B 1 116 5 EDO EDO . H 2 EDO C 1 116 1 EDO EDO . I 2 EDO E 1 116 3 EDO EDO . J 2 EDO E 1 117 4 EDO EDO . K 3 HOH A 1 117 6 HOH HOH . K 3 HOH A 2 118 7 HOH HOH . K 3 HOH A 3 119 13 HOH HOH . K 3 HOH A 4 120 17 HOH HOH . K 3 HOH A 5 121 25 HOH HOH . K 3 HOH A 6 122 28 HOH HOH . K 3 HOH A 7 123 33 HOH HOH . K 3 HOH A 8 124 41 HOH HOH . K 3 HOH A 9 125 42 HOH HOH . K 3 HOH A 10 126 43 HOH HOH . K 3 HOH A 11 127 63 HOH HOH . K 3 HOH A 12 128 66 HOH HOH . K 3 HOH A 13 129 72 HOH HOH . K 3 HOH A 14 130 73 HOH HOH . K 3 HOH A 15 131 74 HOH HOH . K 3 HOH A 16 132 76 HOH HOH . K 3 HOH A 17 133 77 HOH HOH . K 3 HOH A 18 134 78 HOH HOH . K 3 HOH A 19 135 80 HOH HOH . K 3 HOH A 20 136 83 HOH HOH . K 3 HOH A 21 137 84 HOH HOH . K 3 HOH A 22 138 95 HOH HOH . K 3 HOH A 23 139 97 HOH HOH . K 3 HOH A 24 140 102 HOH HOH . K 3 HOH A 25 141 106 HOH HOH . K 3 HOH A 26 142 112 HOH HOH . K 3 HOH A 27 143 118 HOH HOH . K 3 HOH A 28 144 121 HOH HOH . K 3 HOH A 29 145 122 HOH HOH . K 3 HOH A 30 146 126 HOH HOH . K 3 HOH A 31 147 130 HOH HOH . K 3 HOH A 32 148 133 HOH HOH . K 3 HOH A 33 149 137 HOH HOH . K 3 HOH A 34 150 139 HOH HOH . K 3 HOH A 35 151 144 HOH HOH . K 3 HOH A 36 152 148 HOH HOH . K 3 HOH A 37 153 149 HOH HOH . K 3 HOH A 38 154 150 HOH HOH . K 3 HOH A 39 155 151 HOH HOH . K 3 HOH A 40 156 153 HOH HOH . K 3 HOH A 41 157 154 HOH HOH . L 3 HOH B 1 117 12 HOH HOH . L 3 HOH B 2 118 15 HOH HOH . L 3 HOH B 3 119 16 HOH HOH . L 3 HOH B 4 120 19 HOH HOH . L 3 HOH B 5 121 20 HOH HOH . L 3 HOH B 6 122 26 HOH HOH . L 3 HOH B 7 123 34 HOH HOH . L 3 HOH B 8 124 36 HOH HOH . L 3 HOH B 9 125 40 HOH HOH . L 3 HOH B 10 126 44 HOH HOH . L 3 HOH B 11 127 49 HOH HOH . L 3 HOH B 12 128 50 HOH HOH . L 3 HOH B 13 129 52 HOH HOH . L 3 HOH B 14 130 53 HOH HOH . L 3 HOH B 15 131 56 HOH HOH . L 3 HOH B 16 132 57 HOH HOH . L 3 HOH B 17 133 59 HOH HOH . L 3 HOH B 18 134 61 HOH HOH . L 3 HOH B 19 135 67 HOH HOH . L 3 HOH B 20 136 89 HOH HOH . L 3 HOH B 21 137 91 HOH HOH . L 3 HOH B 22 138 92 HOH HOH . L 3 HOH B 23 139 100 HOH HOH . L 3 HOH B 24 140 104 HOH HOH . L 3 HOH B 25 141 105 HOH HOH . L 3 HOH B 26 142 127 HOH HOH . L 3 HOH B 27 143 132 HOH HOH . L 3 HOH B 28 144 134 HOH HOH . L 3 HOH B 29 145 135 HOH HOH . L 3 HOH B 30 146 140 HOH HOH . L 3 HOH B 31 147 141 HOH HOH . L 3 HOH B 32 148 145 HOH HOH . L 3 HOH B 33 149 146 HOH HOH . M 3 HOH C 1 117 8 HOH HOH . M 3 HOH C 2 118 9 HOH HOH . M 3 HOH C 3 119 14 HOH HOH . M 3 HOH C 4 120 18 HOH HOH . M 3 HOH C 5 121 23 HOH HOH . M 3 HOH C 6 122 27 HOH HOH . M 3 HOH C 7 123 30 HOH HOH . M 3 HOH C 8 124 37 HOH HOH . M 3 HOH C 9 125 46 HOH HOH . M 3 HOH C 10 126 47 HOH HOH . M 3 HOH C 11 127 51 HOH HOH . M 3 HOH C 12 128 54 HOH HOH . M 3 HOH C 13 129 55 HOH HOH . M 3 HOH C 14 130 60 HOH HOH . M 3 HOH C 15 131 62 HOH HOH . M 3 HOH C 16 132 65 HOH HOH . M 3 HOH C 17 133 68 HOH HOH . M 3 HOH C 18 134 75 HOH HOH . M 3 HOH C 19 135 79 HOH HOH . M 3 HOH C 20 136 85 HOH HOH . M 3 HOH C 21 137 86 HOH HOH . M 3 HOH C 22 138 90 HOH HOH . M 3 HOH C 23 139 101 HOH HOH . M 3 HOH C 24 140 107 HOH HOH . M 3 HOH C 25 141 108 HOH HOH . M 3 HOH C 26 142 113 HOH HOH . M 3 HOH C 27 143 114 HOH HOH . M 3 HOH C 28 144 131 HOH HOH . M 3 HOH C 29 145 136 HOH HOH . M 3 HOH C 30 146 147 HOH HOH . M 3 HOH C 31 147 152 HOH HOH . N 3 HOH D 1 116 10 HOH HOH . N 3 HOH D 2 117 22 HOH HOH . N 3 HOH D 3 118 64 HOH HOH . N 3 HOH D 4 119 69 HOH HOH . N 3 HOH D 5 120 81 HOH HOH . N 3 HOH D 6 121 94 HOH HOH . N 3 HOH D 7 122 103 HOH HOH . N 3 HOH D 8 123 109 HOH HOH . N 3 HOH D 9 124 115 HOH HOH . N 3 HOH D 10 125 117 HOH HOH . N 3 HOH D 11 126 119 HOH HOH . N 3 HOH D 12 127 123 HOH HOH . N 3 HOH D 13 128 124 HOH HOH . N 3 HOH D 14 129 125 HOH HOH . N 3 HOH D 15 130 128 HOH HOH . N 3 HOH D 16 131 138 HOH HOH . N 3 HOH D 17 132 142 HOH HOH . N 3 HOH D 18 133 143 HOH HOH . N 3 HOH D 19 134 155 HOH HOH . O 3 HOH E 1 118 11 HOH HOH . O 3 HOH E 2 119 21 HOH HOH . O 3 HOH E 3 120 24 HOH HOH . O 3 HOH E 4 121 29 HOH HOH . O 3 HOH E 5 122 31 HOH HOH . O 3 HOH E 6 123 32 HOH HOH . O 3 HOH E 7 124 35 HOH HOH . O 3 HOH E 8 125 38 HOH HOH . O 3 HOH E 9 126 39 HOH HOH . O 3 HOH E 10 127 45 HOH HOH . O 3 HOH E 11 128 48 HOH HOH . O 3 HOH E 12 129 58 HOH HOH . O 3 HOH E 13 130 70 HOH HOH . O 3 HOH E 14 131 71 HOH HOH . O 3 HOH E 15 132 82 HOH HOH . O 3 HOH E 16 133 87 HOH HOH . O 3 HOH E 17 134 88 HOH HOH . O 3 HOH E 18 135 93 HOH HOH . O 3 HOH E 19 136 96 HOH HOH . O 3 HOH E 20 137 98 HOH HOH . O 3 HOH E 21 138 99 HOH HOH . O 3 HOH E 22 139 110 HOH HOH . O 3 HOH E 23 140 111 HOH HOH . O 3 HOH E 24 141 116 HOH HOH . O 3 HOH E 25 142 120 HOH HOH . O 3 HOH E 26 143 129 HOH HOH . O 3 HOH E 27 144 156 HOH HOH . O 3 HOH E 28 145 157 HOH HOH . O 3 HOH E 29 146 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 4.754 49.971 112.269 1 70.16 ? C1 EDO 116 B 1 HETATM 2 O O1 EDO . . . G 2 3.557 50.563 111.729 1 69.97 ? O1 EDO 116 B 1 HETATM 3 C C2 EDO . . . G 2 4.461 49.007 113.428 1 68.28 ? C2 EDO 116 B 1 HETATM 4 O O2 EDO . . . G 2 3.31 49.4 114.193 1 66.97 ? O2 EDO 116 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #