data_3DK5 # _model_server_result.job_id kKQfXAMSE9dbkZcK31b05w _model_server_result.datetime_utc '2024-11-13 21:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":497}' # _entry.id 3DK5 # _exptl.entry_id 3DK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DK5 _cell.length_a 79.6 _cell.length_b 79.6 _cell.length_c 278 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 79.6 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 39.8 68.935622 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DK5 _atom_sites.fract_transf_matrix[1][1] 0.012563 _atom_sites.fract_transf_matrix[1][2] 0.007253 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 496 496 MG MG . C 2 MG A 1 497 497 MG MG . D 3 HOH A 1 498 498 HOH HOH . D 3 HOH A 2 499 499 HOH HOH . D 3 HOH A 3 500 500 HOH HOH . D 3 HOH A 4 501 501 HOH HOH . D 3 HOH A 5 502 502 HOH HOH . D 3 HOH A 6 503 503 HOH HOH . D 3 HOH A 7 504 504 HOH HOH . D 3 HOH A 8 505 505 HOH HOH . D 3 HOH A 9 506 506 HOH HOH . D 3 HOH A 10 507 507 HOH HOH . D 3 HOH A 11 508 508 HOH HOH . D 3 HOH A 12 509 509 HOH HOH . D 3 HOH A 13 510 510 HOH HOH . D 3 HOH A 14 511 511 HOH HOH . D 3 HOH A 15 512 512 HOH HOH . D 3 HOH A 16 513 513 HOH HOH . D 3 HOH A 17 514 514 HOH HOH . D 3 HOH A 18 515 515 HOH HOH . D 3 HOH A 19 516 516 HOH HOH . D 3 HOH A 20 517 517 HOH HOH . D 3 HOH A 21 518 518 HOH HOH . D 3 HOH A 22 519 519 HOH HOH . D 3 HOH A 23 520 520 HOH HOH . D 3 HOH A 24 521 521 HOH HOH . D 3 HOH A 25 522 522 HOH HOH . D 3 HOH A 26 523 523 HOH HOH . D 3 HOH A 27 524 524 HOH HOH . D 3 HOH A 28 525 525 HOH HOH . D 3 HOH A 29 526 526 HOH HOH . D 3 HOH A 30 527 527 HOH HOH . D 3 HOH A 31 528 528 HOH HOH . D 3 HOH A 32 529 529 HOH HOH . D 3 HOH A 33 530 530 HOH HOH . D 3 HOH A 34 531 531 HOH HOH . D 3 HOH A 35 532 532 HOH HOH . D 3 HOH A 36 533 533 HOH HOH . D 3 HOH A 37 534 534 HOH HOH . D 3 HOH A 38 535 535 HOH HOH . D 3 HOH A 39 536 536 HOH HOH . D 3 HOH A 40 537 537 HOH HOH . D 3 HOH A 41 538 538 HOH HOH . D 3 HOH A 42 539 539 HOH HOH . D 3 HOH A 43 540 540 HOH HOH . D 3 HOH A 44 541 541 HOH HOH . D 3 HOH A 45 542 542 HOH HOH . D 3 HOH A 46 543 543 HOH HOH . D 3 HOH A 47 544 544 HOH HOH . D 3 HOH A 48 545 545 HOH HOH . D 3 HOH A 49 546 546 HOH HOH . D 3 HOH A 50 547 547 HOH HOH . D 3 HOH A 51 548 548 HOH HOH . D 3 HOH A 52 549 549 HOH HOH . D 3 HOH A 53 550 550 HOH HOH . D 3 HOH A 54 551 551 HOH HOH . D 3 HOH A 55 552 552 HOH HOH . D 3 HOH A 56 553 553 HOH HOH . D 3 HOH A 57 554 554 HOH HOH . D 3 HOH A 58 555 555 HOH HOH . D 3 HOH A 59 556 556 HOH HOH . D 3 HOH A 60 557 557 HOH HOH . D 3 HOH A 61 558 558 HOH HOH . D 3 HOH A 62 559 559 HOH HOH . D 3 HOH A 63 560 560 HOH HOH . D 3 HOH A 64 561 561 HOH HOH . D 3 HOH A 65 562 562 HOH HOH . D 3 HOH A 66 563 563 HOH HOH . D 3 HOH A 67 564 564 HOH HOH . D 3 HOH A 68 565 565 HOH HOH . D 3 HOH A 69 566 566 HOH HOH . D 3 HOH A 70 567 567 HOH HOH . D 3 HOH A 71 568 568 HOH HOH . D 3 HOH A 72 569 569 HOH HOH . D 3 HOH A 73 570 570 HOH HOH . D 3 HOH A 74 571 571 HOH HOH . D 3 HOH A 75 572 572 HOH HOH . D 3 HOH A 76 573 573 HOH HOH . D 3 HOH A 77 574 574 HOH HOH . D 3 HOH A 78 575 575 HOH HOH . D 3 HOH A 79 576 576 HOH HOH . D 3 HOH A 80 577 577 HOH HOH . D 3 HOH A 81 578 578 HOH HOH . D 3 HOH A 82 579 579 HOH HOH . D 3 HOH A 83 580 580 HOH HOH . D 3 HOH A 84 581 581 HOH HOH . D 3 HOH A 85 582 582 HOH HOH . D 3 HOH A 86 583 583 HOH HOH . D 3 HOH A 87 584 584 HOH HOH . D 3 HOH A 88 585 585 HOH HOH . D 3 HOH A 89 586 586 HOH HOH . D 3 HOH A 90 587 587 HOH HOH . D 3 HOH A 91 588 588 HOH HOH . D 3 HOH A 92 589 589 HOH HOH . D 3 HOH A 93 590 590 HOH HOH . D 3 HOH A 94 591 591 HOH HOH . D 3 HOH A 95 592 592 HOH HOH . D 3 HOH A 96 593 593 HOH HOH . D 3 HOH A 97 594 594 HOH HOH . D 3 HOH A 98 595 595 HOH HOH . D 3 HOH A 99 596 596 HOH HOH . D 3 HOH A 100 597 597 HOH HOH . D 3 HOH A 101 598 598 HOH HOH . D 3 HOH A 102 599 599 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 40.075 _atom_site.Cartn_y 23.741 _atom_site.Cartn_z -12.806 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 26.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 497 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #