data_3DK7 # _model_server_result.job_id J4X621a3cuNBbv3GLj6rEA _model_server_result.datetime_utc '2025-01-19 23:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4}' # _entry.id 3DK7 # _exptl.entry_id 3DK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DK7 _cell.length_a 105.941 _cell.length_b 132.712 _cell.length_c 56.297 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 163 A THR 392 1_555 A N PTR 164 A PTR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C PTR 164 A PTR 393 1_555 A N THR 165 A THR 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C THR 163 B THR 392 1_555 B N PTR 164 B PTR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C PTR 164 B PTR 393 1_555 B N THR 165 B THR 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 319 n n S O2 SO4 doub 320 n n S O3 SO4 sing 321 n n S O4 SO4 sing 322 n n # _atom_sites.entry_id 3DK7 _atom_sites.fract_transf_matrix[1][1] 0.009439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SX7 A 1 1 1 SX7 SX7 . D 3 SO4 B 1 3 3 SO4 SO4 . E 3 SO4 B 1 4 4 SO4 SO4 . F 2 SX7 B 1 2 2 SX7 SX7 . G 4 HOH A 1 507 5 HOH HOH . G 4 HOH A 2 508 6 HOH HOH . G 4 HOH A 3 509 7 HOH HOH . G 4 HOH A 4 510 9 HOH HOH . G 4 HOH A 5 511 10 HOH HOH . G 4 HOH A 6 512 11 HOH HOH . G 4 HOH A 7 513 12 HOH HOH . G 4 HOH A 8 514 14 HOH HOH . G 4 HOH A 9 515 15 HOH HOH . G 4 HOH A 10 516 16 HOH HOH . G 4 HOH A 11 517 17 HOH HOH . G 4 HOH A 12 518 18 HOH HOH . G 4 HOH A 13 519 19 HOH HOH . G 4 HOH A 14 520 20 HOH HOH . G 4 HOH A 15 521 21 HOH HOH . G 4 HOH A 16 522 24 HOH HOH . G 4 HOH A 17 523 25 HOH HOH . G 4 HOH A 18 524 26 HOH HOH . G 4 HOH A 19 525 28 HOH HOH . G 4 HOH A 20 526 29 HOH HOH . G 4 HOH A 21 527 30 HOH HOH . G 4 HOH A 22 528 31 HOH HOH . G 4 HOH A 23 529 32 HOH HOH . G 4 HOH A 24 530 33 HOH HOH . G 4 HOH A 25 531 34 HOH HOH . G 4 HOH A 26 532 35 HOH HOH . G 4 HOH A 27 533 37 HOH HOH . G 4 HOH A 28 534 38 HOH HOH . G 4 HOH A 29 535 42 HOH HOH . G 4 HOH A 30 536 43 HOH HOH . G 4 HOH A 31 537 45 HOH HOH . G 4 HOH A 32 538 47 HOH HOH . G 4 HOH A 33 539 49 HOH HOH . G 4 HOH A 34 540 50 HOH HOH . G 4 HOH A 35 541 51 HOH HOH . G 4 HOH A 36 542 52 HOH HOH . G 4 HOH A 37 543 54 HOH HOH . G 4 HOH A 38 544 55 HOH HOH . G 4 HOH A 39 545 57 HOH HOH . G 4 HOH A 40 546 58 HOH HOH . G 4 HOH A 41 547 59 HOH HOH . G 4 HOH A 42 548 60 HOH HOH . G 4 HOH A 43 549 61 HOH HOH . G 4 HOH A 44 550 63 HOH HOH . G 4 HOH A 45 551 64 HOH HOH . G 4 HOH A 46 552 66 HOH HOH . G 4 HOH A 47 553 67 HOH HOH . G 4 HOH A 48 554 68 HOH HOH . G 4 HOH A 49 555 70 HOH HOH . G 4 HOH A 50 556 72 HOH HOH . G 4 HOH A 51 557 73 HOH HOH . G 4 HOH A 52 558 76 HOH HOH . G 4 HOH A 53 559 77 HOH HOH . G 4 HOH A 54 560 79 HOH HOH . G 4 HOH A 55 561 80 HOH HOH . G 4 HOH A 56 562 81 HOH HOH . G 4 HOH A 57 563 84 HOH HOH . G 4 HOH A 58 564 87 HOH HOH . G 4 HOH A 59 565 90 HOH HOH . G 4 HOH A 60 566 91 HOH HOH . G 4 HOH A 61 567 94 HOH HOH . G 4 HOH A 62 568 95 HOH HOH . G 4 HOH A 63 569 97 HOH HOH . G 4 HOH A 64 570 98 HOH HOH . G 4 HOH A 65 571 99 HOH HOH . G 4 HOH A 66 572 101 HOH HOH . G 4 HOH A 67 573 105 HOH HOH . G 4 HOH A 68 574 106 HOH HOH . G 4 HOH A 69 575 107 HOH HOH . G 4 HOH A 70 576 108 HOH HOH . G 4 HOH A 71 577 109 HOH HOH . G 4 HOH A 72 578 113 HOH HOH . G 4 HOH A 73 579 115 HOH HOH . G 4 HOH A 74 580 116 HOH HOH . G 4 HOH A 75 581 117 HOH HOH . G 4 HOH A 76 582 118 HOH HOH . G 4 HOH A 77 583 119 HOH HOH . G 4 HOH A 78 584 120 HOH HOH . G 4 HOH A 79 585 124 HOH HOH . G 4 HOH A 80 586 126 HOH HOH . G 4 HOH A 81 587 127 HOH HOH . G 4 HOH A 82 588 129 HOH HOH . G 4 HOH A 83 589 130 HOH HOH . G 4 HOH A 84 590 135 HOH HOH . G 4 HOH A 85 591 136 HOH HOH . G 4 HOH A 86 592 137 HOH HOH . G 4 HOH A 87 593 138 HOH HOH . G 4 HOH A 88 594 139 HOH HOH . G 4 HOH A 89 595 141 HOH HOH . G 4 HOH A 90 596 147 HOH HOH . G 4 HOH A 91 597 148 HOH HOH . G 4 HOH A 92 598 149 HOH HOH . G 4 HOH A 93 599 150 HOH HOH . G 4 HOH A 94 600 151 HOH HOH . G 4 HOH A 95 601 152 HOH HOH . G 4 HOH A 96 602 154 HOH HOH . G 4 HOH A 97 603 155 HOH HOH . G 4 HOH A 98 604 156 HOH HOH . G 4 HOH A 99 605 158 HOH HOH . G 4 HOH A 100 606 159 HOH HOH . G 4 HOH A 101 607 161 HOH HOH . G 4 HOH A 102 608 163 HOH HOH . G 4 HOH A 103 609 166 HOH HOH . G 4 HOH A 104 610 167 HOH HOH . G 4 HOH A 105 611 168 HOH HOH . G 4 HOH A 106 612 169 HOH HOH . G 4 HOH A 107 613 170 HOH HOH . G 4 HOH A 108 614 171 HOH HOH . G 4 HOH A 109 615 174 HOH HOH . G 4 HOH A 110 616 176 HOH HOH . G 4 HOH A 111 617 177 HOH HOH . G 4 HOH A 112 618 179 HOH HOH . G 4 HOH A 113 619 181 HOH HOH . G 4 HOH A 114 620 184 HOH HOH . G 4 HOH A 115 621 185 HOH HOH . G 4 HOH A 116 622 186 HOH HOH . G 4 HOH A 117 623 189 HOH HOH . G 4 HOH A 118 624 191 HOH HOH . G 4 HOH A 119 625 192 HOH HOH . G 4 HOH A 120 626 194 HOH HOH . G 4 HOH A 121 627 196 HOH HOH . G 4 HOH A 122 628 197 HOH HOH . G 4 HOH A 123 629 198 HOH HOH . G 4 HOH A 124 630 199 HOH HOH . G 4 HOH A 125 631 200 HOH HOH . G 4 HOH A 126 632 201 HOH HOH . G 4 HOH A 127 633 202 HOH HOH . G 4 HOH A 128 634 204 HOH HOH . G 4 HOH A 129 635 209 HOH HOH . G 4 HOH A 130 636 210 HOH HOH . G 4 HOH A 131 637 213 HOH HOH . G 4 HOH A 132 638 215 HOH HOH . G 4 HOH A 133 639 216 HOH HOH . G 4 HOH A 134 640 220 HOH HOH . G 4 HOH A 135 641 222 HOH HOH . G 4 HOH A 136 642 223 HOH HOH . G 4 HOH A 137 643 228 HOH HOH . G 4 HOH A 138 644 231 HOH HOH . G 4 HOH A 139 645 232 HOH HOH . G 4 HOH A 140 646 234 HOH HOH . G 4 HOH A 141 647 236 HOH HOH . G 4 HOH A 142 648 237 HOH HOH . G 4 HOH A 143 649 238 HOH HOH . G 4 HOH A 144 650 241 HOH HOH . G 4 HOH A 145 651 243 HOH HOH . G 4 HOH A 146 652 244 HOH HOH . G 4 HOH A 147 653 245 HOH HOH . G 4 HOH A 148 654 246 HOH HOH . G 4 HOH A 149 655 248 HOH HOH . G 4 HOH A 150 656 249 HOH HOH . G 4 HOH A 151 657 252 HOH HOH . G 4 HOH A 152 658 253 HOH HOH . G 4 HOH A 153 659 254 HOH HOH . G 4 HOH A 154 660 258 HOH HOH . G 4 HOH A 155 661 259 HOH HOH . G 4 HOH A 156 662 260 HOH HOH . G 4 HOH A 157 663 262 HOH HOH . G 4 HOH A 158 664 265 HOH HOH . G 4 HOH A 159 665 268 HOH HOH . G 4 HOH A 160 666 272 HOH HOH . G 4 HOH A 161 667 273 HOH HOH . G 4 HOH A 162 668 274 HOH HOH . G 4 HOH A 163 669 276 HOH HOH . G 4 HOH A 164 670 284 HOH HOH . G 4 HOH A 165 671 285 HOH HOH . G 4 HOH A 166 672 286 HOH HOH . G 4 HOH A 167 673 287 HOH HOH . G 4 HOH A 168 674 183 HOH HOH . H 4 HOH B 1 605 157 HOH HOH . H 4 HOH B 2 606 175 HOH HOH . H 4 HOH B 3 607 221 HOH HOH . H 4 HOH B 4 608 8 HOH HOH . H 4 HOH B 5 609 13 HOH HOH . H 4 HOH B 6 610 22 HOH HOH . H 4 HOH B 7 611 23 HOH HOH . H 4 HOH B 8 612 27 HOH HOH . H 4 HOH B 9 613 36 HOH HOH . H 4 HOH B 10 614 39 HOH HOH . H 4 HOH B 11 615 40 HOH HOH . H 4 HOH B 12 616 41 HOH HOH . H 4 HOH B 13 617 44 HOH HOH . H 4 HOH B 14 618 46 HOH HOH . H 4 HOH B 15 619 48 HOH HOH . H 4 HOH B 16 620 53 HOH HOH . H 4 HOH B 17 621 56 HOH HOH . H 4 HOH B 18 622 62 HOH HOH . H 4 HOH B 19 623 65 HOH HOH . H 4 HOH B 20 624 69 HOH HOH . H 4 HOH B 21 625 71 HOH HOH . H 4 HOH B 22 626 74 HOH HOH . H 4 HOH B 23 627 75 HOH HOH . H 4 HOH B 24 628 78 HOH HOH . H 4 HOH B 25 629 82 HOH HOH . H 4 HOH B 26 630 83 HOH HOH . H 4 HOH B 27 631 85 HOH HOH . H 4 HOH B 28 632 86 HOH HOH . H 4 HOH B 29 633 88 HOH HOH . H 4 HOH B 30 634 89 HOH HOH . H 4 HOH B 31 635 92 HOH HOH . H 4 HOH B 32 636 93 HOH HOH . H 4 HOH B 33 637 96 HOH HOH . H 4 HOH B 34 638 100 HOH HOH . H 4 HOH B 35 639 102 HOH HOH . H 4 HOH B 36 640 103 HOH HOH . H 4 HOH B 37 641 104 HOH HOH . H 4 HOH B 38 642 110 HOH HOH . H 4 HOH B 39 643 111 HOH HOH . H 4 HOH B 40 644 112 HOH HOH . H 4 HOH B 41 645 114 HOH HOH . H 4 HOH B 42 646 121 HOH HOH . H 4 HOH B 43 647 122 HOH HOH . H 4 HOH B 44 648 123 HOH HOH . H 4 HOH B 45 649 125 HOH HOH . H 4 HOH B 46 650 128 HOH HOH . H 4 HOH B 47 651 131 HOH HOH . H 4 HOH B 48 652 132 HOH HOH . H 4 HOH B 49 653 133 HOH HOH . H 4 HOH B 50 654 134 HOH HOH . H 4 HOH B 51 655 140 HOH HOH . H 4 HOH B 52 656 142 HOH HOH . H 4 HOH B 53 657 143 HOH HOH . H 4 HOH B 54 658 144 HOH HOH . H 4 HOH B 55 659 145 HOH HOH . H 4 HOH B 56 660 146 HOH HOH . H 4 HOH B 57 661 153 HOH HOH . H 4 HOH B 58 662 160 HOH HOH . H 4 HOH B 59 663 162 HOH HOH . H 4 HOH B 60 664 164 HOH HOH . H 4 HOH B 61 665 165 HOH HOH . H 4 HOH B 62 666 172 HOH HOH . H 4 HOH B 63 667 173 HOH HOH . H 4 HOH B 64 668 178 HOH HOH . H 4 HOH B 65 669 180 HOH HOH . H 4 HOH B 66 670 182 HOH HOH . H 4 HOH B 67 671 187 HOH HOH . H 4 HOH B 68 672 188 HOH HOH . H 4 HOH B 69 673 190 HOH HOH . H 4 HOH B 70 674 193 HOH HOH . H 4 HOH B 71 675 195 HOH HOH . H 4 HOH B 72 676 203 HOH HOH . H 4 HOH B 73 677 205 HOH HOH . H 4 HOH B 74 678 206 HOH HOH . H 4 HOH B 75 679 207 HOH HOH . H 4 HOH B 76 680 208 HOH HOH . H 4 HOH B 77 681 211 HOH HOH . H 4 HOH B 78 682 212 HOH HOH . H 4 HOH B 79 683 214 HOH HOH . H 4 HOH B 80 684 217 HOH HOH . H 4 HOH B 81 685 218 HOH HOH . H 4 HOH B 82 686 219 HOH HOH . H 4 HOH B 83 687 224 HOH HOH . H 4 HOH B 84 688 225 HOH HOH . H 4 HOH B 85 689 226 HOH HOH . H 4 HOH B 86 690 227 HOH HOH . H 4 HOH B 87 691 229 HOH HOH . H 4 HOH B 88 692 230 HOH HOH . H 4 HOH B 89 693 233 HOH HOH . H 4 HOH B 90 694 235 HOH HOH . H 4 HOH B 91 695 239 HOH HOH . H 4 HOH B 92 696 240 HOH HOH . H 4 HOH B 93 697 242 HOH HOH . H 4 HOH B 94 698 247 HOH HOH . H 4 HOH B 95 699 250 HOH HOH . H 4 HOH B 96 700 251 HOH HOH . H 4 HOH B 97 701 255 HOH HOH . H 4 HOH B 98 702 256 HOH HOH . H 4 HOH B 99 703 257 HOH HOH . H 4 HOH B 100 704 261 HOH HOH . H 4 HOH B 101 705 263 HOH HOH . H 4 HOH B 102 706 264 HOH HOH . H 4 HOH B 103 707 266 HOH HOH . H 4 HOH B 104 708 267 HOH HOH . H 4 HOH B 105 709 269 HOH HOH . H 4 HOH B 106 710 270 HOH HOH . H 4 HOH B 107 711 271 HOH HOH . H 4 HOH B 108 712 275 HOH HOH . H 4 HOH B 109 713 277 HOH HOH . H 4 HOH B 110 714 278 HOH HOH . H 4 HOH B 111 715 279 HOH HOH . H 4 HOH B 112 716 280 HOH HOH . H 4 HOH B 113 717 281 HOH HOH . H 4 HOH B 114 718 282 HOH HOH . H 4 HOH B 115 719 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 -49.084 100.383 81.7 1 58.02 ? S SO4 4 B 1 HETATM 2 O O1 SO4 . . . E 3 -47.891 101.188 81.455 1 60.21 ? O1 SO4 4 B 1 HETATM 3 O O2 SO4 . . . E 3 -49.104 99.954 83.095 1 59.45 ? O2 SO4 4 B 1 HETATM 4 O O3 SO4 . . . E 3 -50.273 101.178 81.409 1 58.68 ? O3 SO4 4 B 1 HETATM 5 O O4 SO4 . . . E 3 -49.065 99.207 80.835 1 62.72 ? O4 SO4 4 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 932 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #