data_3DKO # _model_server_result.job_id 2cMHZPvggU8tRO_ptNIb0Q _model_server_result.datetime_utc '2024-12-26 09:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3DKO # _exptl.entry_id 3DKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(2-methyl-5-{[3-(trifluoromethyl)phenyl]carbamoyl}phenyl)amino]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DKO _cell.length_a 52.658 _cell.length_b 52.658 _cell.length_c 217.059 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H17 F3 N4 O2' _chem_comp.formula_weight 414.38 _chem_comp.id IHZ _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(2-methyl-5-{[3-(trifluoromethyl)phenyl]carbamoyl}phenyl)amino]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAE CBD IHZ sing 152 n n CBD FAF IHZ sing 153 n n CBD FAG IHZ sing 154 n n CBD CBB IHZ sing 155 n n CBB CAP IHZ doub 156 n y CBB CAK IHZ sing 157 n y CAP CAX IHZ sing 158 n y CAK CAH IHZ doub 159 n y CAH CAI IHZ sing 160 n y CAI CAX IHZ doub 161 n y CAX NAS IHZ sing 162 n n NAS CAV IHZ sing 163 n n CAV OAD IHZ doub 164 n n CAV CAZ IHZ sing 165 n n CAZ CAQ IHZ doub 166 n y CAZ CAL IHZ sing 167 n y CAQ CBC IHZ sing 168 n y CAL CAJ IHZ doub 169 n y CAJ CAW IHZ sing 170 n y CAW CAA IHZ sing 171 n n CAW CBC IHZ doub 172 n y CBC NAT IHZ sing 173 n n NAT CAY IHZ sing 174 n n CAY CAO IHZ doub 175 n y CAY CAM IHZ sing 176 n y CAO CBA IHZ sing 177 n y CAM NAR IHZ doub 178 n y NAR CAN IHZ sing 179 n y CAN CBA IHZ doub 180 n y CBA CAU IHZ sing 181 n n CAU OAC IHZ doub 182 n n CAU NAB IHZ sing 183 n n CAP HAP IHZ sing 184 n n CAK HAK IHZ sing 185 n n CAH HAH IHZ sing 186 n n CAI HAI IHZ sing 187 n n NAS HNAS IHZ sing 188 n n CAQ HAQ IHZ sing 189 n n CAL HAL IHZ sing 190 n n CAJ HAJ IHZ sing 191 n n CAA HAA IHZ sing 192 n n CAA HAAA IHZ sing 193 n n CAA HAAB IHZ sing 194 n n NAT HNAT IHZ sing 195 n n CAO HAO IHZ sing 196 n n CAM HAM IHZ sing 197 n n CAN HAN IHZ sing 198 n n NAB HNAB IHZ sing 199 n n NAB HNAA IHZ sing 200 n n # _atom_sites.entry_id 3DKO _atom_sites.fract_transf_matrix[1][1] 0.01899 _atom_sites.fract_transf_matrix[1][2] 0.010964 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004607 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHZ A 1 1001 1001 IHZ IHZ . C 3 HOH A 1 1002 1002 HOH HOH . C 3 HOH A 2 1003 1003 HOH HOH . C 3 HOH A 3 1004 1004 HOH HOH . C 3 HOH A 4 1005 1005 HOH HOH . C 3 HOH A 5 1006 1006 HOH HOH . C 3 HOH A 6 1007 1007 HOH HOH . C 3 HOH A 7 1008 1008 HOH HOH . C 3 HOH A 8 1009 1009 HOH HOH . C 3 HOH A 9 1010 1010 HOH HOH . C 3 HOH A 10 1011 1011 HOH HOH . C 3 HOH A 11 1012 1012 HOH HOH . C 3 HOH A 12 1013 1013 HOH HOH . C 3 HOH A 13 1014 1014 HOH HOH . C 3 HOH A 14 1015 1015 HOH HOH . C 3 HOH A 15 1016 1016 HOH HOH . C 3 HOH A 16 1017 1017 HOH HOH . C 3 HOH A 17 1018 1018 HOH HOH . C 3 HOH A 18 1019 1019 HOH HOH . C 3 HOH A 19 1020 1020 HOH HOH . C 3 HOH A 20 1021 1021 HOH HOH . C 3 HOH A 21 1022 1022 HOH HOH . C 3 HOH A 22 1023 1023 HOH HOH . C 3 HOH A 23 1024 1024 HOH HOH . C 3 HOH A 24 1025 1025 HOH HOH . C 3 HOH A 25 1026 1026 HOH HOH . C 3 HOH A 26 1027 1027 HOH HOH . C 3 HOH A 27 1028 1028 HOH HOH . C 3 HOH A 28 1029 1029 HOH HOH . C 3 HOH A 29 1030 1030 HOH HOH . C 3 HOH A 30 1031 1031 HOH HOH . C 3 HOH A 31 1032 1032 HOH HOH . C 3 HOH A 32 1033 1033 HOH HOH . C 3 HOH A 33 1034 1034 HOH HOH . C 3 HOH A 34 1035 1035 HOH HOH . C 3 HOH A 35 1036 1036 HOH HOH . C 3 HOH A 36 1037 1037 HOH HOH . C 3 HOH A 37 1038 1038 HOH HOH . C 3 HOH A 38 1039 1039 HOH HOH . C 3 HOH A 39 1040 1040 HOH HOH . C 3 HOH A 40 1041 1041 HOH HOH . C 3 HOH A 41 1042 1042 HOH HOH . C 3 HOH A 42 1043 1043 HOH HOH . C 3 HOH A 43 1044 1044 HOH HOH . C 3 HOH A 44 1045 1045 HOH HOH . C 3 HOH A 45 1046 1046 HOH HOH . C 3 HOH A 46 1047 1047 HOH HOH . C 3 HOH A 47 1048 1048 HOH HOH . C 3 HOH A 48 1049 1049 HOH HOH . C 3 HOH A 49 1050 1050 HOH HOH . C 3 HOH A 50 1051 1051 HOH HOH . C 3 HOH A 51 1052 1052 HOH HOH . C 3 HOH A 52 1053 1053 HOH HOH . C 3 HOH A 53 1054 1054 HOH HOH . C 3 HOH A 54 1055 1055 HOH HOH . C 3 HOH A 55 1056 1056 HOH HOH . C 3 HOH A 56 1057 1057 HOH HOH . C 3 HOH A 57 1058 1058 HOH HOH . C 3 HOH A 58 1059 1059 HOH HOH . C 3 HOH A 59 1060 1060 HOH HOH . C 3 HOH A 60 1061 1061 HOH HOH . C 3 HOH A 61 1062 1062 HOH HOH . C 3 HOH A 62 1063 1063 HOH HOH . C 3 HOH A 63 1064 1064 HOH HOH . C 3 HOH A 64 1065 1065 HOH HOH . C 3 HOH A 65 1066 1066 HOH HOH . C 3 HOH A 66 1067 1067 HOH HOH . C 3 HOH A 67 1068 1068 HOH HOH . C 3 HOH A 68 1069 1069 HOH HOH . C 3 HOH A 69 1070 1070 HOH HOH . C 3 HOH A 70 1071 1071 HOH HOH . C 3 HOH A 71 1072 1072 HOH HOH . C 3 HOH A 72 1073 1073 HOH HOH . C 3 HOH A 73 1074 1074 HOH HOH . C 3 HOH A 74 1075 1075 HOH HOH . C 3 HOH A 75 1076 1076 HOH HOH . C 3 HOH A 76 1077 1077 HOH HOH . C 3 HOH A 77 1078 1078 HOH HOH . C 3 HOH A 78 1079 1079 HOH HOH . C 3 HOH A 79 1080 1080 HOH HOH . C 3 HOH A 80 1081 1081 HOH HOH . C 3 HOH A 81 1082 1082 HOH HOH . C 3 HOH A 82 1084 1084 HOH HOH . C 3 HOH A 83 1085 1085 HOH HOH . C 3 HOH A 84 1086 1086 HOH HOH . C 3 HOH A 85 1087 1087 HOH HOH . C 3 HOH A 86 1088 1088 HOH HOH . C 3 HOH A 87 1089 1089 HOH HOH . C 3 HOH A 88 1090 1090 HOH HOH . C 3 HOH A 89 1091 1091 HOH HOH . C 3 HOH A 90 1092 1092 HOH HOH . C 3 HOH A 91 1093 1093 HOH HOH . C 3 HOH A 92 1094 1094 HOH HOH . C 3 HOH A 93 1095 1095 HOH HOH . C 3 HOH A 94 1096 1096 HOH HOH . C 3 HOH A 95 1097 1097 HOH HOH . C 3 HOH A 96 1098 1098 HOH HOH . C 3 HOH A 97 1099 1099 HOH HOH . C 3 HOH A 98 1100 1100 HOH HOH . C 3 HOH A 99 1102 1102 HOH HOH . C 3 HOH A 100 1103 1103 HOH HOH . C 3 HOH A 101 1104 1104 HOH HOH . C 3 HOH A 102 1105 1105 HOH HOH . C 3 HOH A 103 1106 1106 HOH HOH . C 3 HOH A 104 1107 1107 HOH HOH . C 3 HOH A 105 1108 1108 HOH HOH . C 3 HOH A 106 1109 1109 HOH HOH . C 3 HOH A 107 1110 1110 HOH HOH . C 3 HOH A 108 1111 1111 HOH HOH . C 3 HOH A 109 1112 1112 HOH HOH . C 3 HOH A 110 1113 1113 HOH HOH . C 3 HOH A 111 1114 1114 HOH HOH . C 3 HOH A 112 1115 1115 HOH HOH . C 3 HOH A 113 1116 1116 HOH HOH . C 3 HOH A 114 1117 1117 HOH HOH . C 3 HOH A 115 1118 1118 HOH HOH . C 3 HOH A 116 1119 1119 HOH HOH . C 3 HOH A 117 1120 1120 HOH HOH . C 3 HOH A 118 1121 1121 HOH HOH . C 3 HOH A 119 1122 1122 HOH HOH . C 3 HOH A 120 1123 1123 HOH HOH . C 3 HOH A 121 1124 1124 HOH HOH . C 3 HOH A 122 1125 1125 HOH HOH . C 3 HOH A 123 1126 1126 HOH HOH . C 3 HOH A 124 1127 1127 HOH HOH . C 3 HOH A 125 1128 1128 HOH HOH . C 3 HOH A 126 1129 1129 HOH HOH . C 3 HOH A 127 1130 1130 HOH HOH . C 3 HOH A 128 1131 1131 HOH HOH . C 3 HOH A 129 1132 1132 HOH HOH . C 3 HOH A 130 1133 1133 HOH HOH . C 3 HOH A 131 1134 1134 HOH HOH . C 3 HOH A 132 1135 1135 HOH HOH . C 3 HOH A 133 1136 1136 HOH HOH . C 3 HOH A 134 1137 1137 HOH HOH . C 3 HOH A 135 1138 1138 HOH HOH . C 3 HOH A 136 1139 1139 HOH HOH . C 3 HOH A 137 1140 1140 HOH HOH . C 3 HOH A 138 1141 1141 HOH HOH . C 3 HOH A 139 1142 1142 HOH HOH . C 3 HOH A 140 1143 1143 HOH HOH . C 3 HOH A 141 1144 1144 HOH HOH . C 3 HOH A 142 1145 1145 HOH HOH . C 3 HOH A 143 1146 1146 HOH HOH . C 3 HOH A 144 1147 1147 HOH HOH . C 3 HOH A 145 1148 1148 HOH HOH . C 3 HOH A 146 1149 1149 HOH HOH . C 3 HOH A 147 1150 1150 HOH HOH . C 3 HOH A 148 1151 1151 HOH HOH . C 3 HOH A 149 1152 1152 HOH HOH . C 3 HOH A 150 1153 1153 HOH HOH . C 3 HOH A 151 1154 1154 HOH HOH . C 3 HOH A 152 1155 1155 HOH HOH . C 3 HOH A 153 1156 1156 HOH HOH . C 3 HOH A 154 1157 1157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAE IHZ . . . B 2 -15.951 11.295 -5.196 1 52.39 ? FAE IHZ 1001 A 1 HETATM 2 C CBD IHZ . . . B 2 -16.306 10.129 -4.647 1 51.38 ? CBD IHZ 1001 A 1 HETATM 3 F FAF IHZ . . . B 2 -16.039 10.116 -3.331 1 52.31 ? FAF IHZ 1001 A 1 HETATM 4 F FAG IHZ . . . B 2 -15.591 9.159 -5.219 1 53.09 ? FAG IHZ 1001 A 1 HETATM 5 C CBB IHZ . . . B 2 -17.804 9.857 -4.921 1 50.49 ? CBB IHZ 1001 A 1 HETATM 6 C CAP IHZ . . . B 2 -18.282 9.943 -6.23 1 48.91 ? CAP IHZ 1001 A 1 HETATM 7 C CAK IHZ . . . B 2 -18.675 9.501 -3.881 1 48.27 ? CAK IHZ 1001 A 1 HETATM 8 C CAH IHZ . . . B 2 -20.014 9.247 -4.163 1 48.71 ? CAH IHZ 1001 A 1 HETATM 9 C CAI IHZ . . . B 2 -20.477 9.351 -5.479 1 48.7 ? CAI IHZ 1001 A 1 HETATM 10 C CAX IHZ . . . B 2 -19.627 9.699 -6.53 1 48.39 ? CAX IHZ 1001 A 1 HETATM 11 N NAS IHZ . . . B 2 -20.132 9.785 -7.79 1 47.93 ? NAS IHZ 1001 A 1 HETATM 12 C CAV IHZ . . . B 2 -19.457 9.604 -8.948 1 46.83 ? CAV IHZ 1001 A 1 HETATM 13 O OAD IHZ . . . B 2 -18.253 9.359 -9.034 1 48.03 ? OAD IHZ 1001 A 1 HETATM 14 C CAZ IHZ . . . B 2 -20.266 9.754 -10.25 1 46.07 ? CAZ IHZ 1001 A 1 HETATM 15 C CAQ IHZ . . . B 2 -19.635 10.293 -11.376 1 46.14 ? CAQ IHZ 1001 A 1 HETATM 16 C CAL IHZ . . . B 2 -21.602 9.358 -10.337 1 46.54 ? CAL IHZ 1001 A 1 HETATM 17 C CAJ IHZ . . . B 2 -22.269 9.523 -11.552 1 46.7 ? CAJ IHZ 1001 A 1 HETATM 18 C CAW IHZ . . . B 2 -21.629 10.068 -12.675 1 46.71 ? CAW IHZ 1001 A 1 HETATM 19 C CAA IHZ . . . B 2 -22.442 10.224 -13.965 1 46.72 ? CAA IHZ 1001 A 1 HETATM 20 C CBC IHZ . . . B 2 -20.284 10.449 -12.608 1 46.49 ? CBC IHZ 1001 A 1 HETATM 21 N NAT IHZ . . . B 2 -19.592 11.009 -13.64 1 46.51 ? NAT IHZ 1001 A 1 HETATM 22 C CAY IHZ . . . B 2 -19.324 10.532 -14.882 1 46.42 ? CAY IHZ 1001 A 1 HETATM 23 C CAO IHZ . . . B 2 -19.865 9.338 -15.376 1 46.45 ? CAO IHZ 1001 A 1 HETATM 24 C CAM IHZ . . . B 2 -18.465 11.269 -15.725 1 46.69 ? CAM IHZ 1001 A 1 HETATM 25 N NAR IHZ . . . B 2 -18.176 10.853 -16.959 1 46.3 ? NAR IHZ 1001 A 1 HETATM 26 C CAN IHZ . . . B 2 -18.683 9.715 -17.443 1 46.91 ? CAN IHZ 1001 A 1 HETATM 27 C CBA IHZ . . . B 2 -19.551 8.92 -16.674 1 46.93 ? CBA IHZ 1001 A 1 HETATM 28 C CAU IHZ . . . B 2 -20.154 7.592 -17.199 1 47.75 ? CAU IHZ 1001 A 1 HETATM 29 O OAC IHZ . . . B 2 -21.038 7.016 -16.562 1 49.84 ? OAC IHZ 1001 A 1 HETATM 30 N NAB IHZ . . . B 2 -19.663 7.123 -18.351 1 47.36 ? NAB IHZ 1001 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #