data_3DKX # _model_server_result.job_id KAtSPJncvlGDwEFMXGZ0eA _model_server_result.datetime_utc '2025-04-27 11:18:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":211}' # _entry.id 3DKX # _exptl.entry_id 3DKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3DKX _cell.length_a 85.611 _cell.length_b 85.611 _cell.length_c 245.53 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -81.843333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 39 A HIS 39 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A OD1 ASP 42 A ASP 42 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 A NE2 HIS 55 A HIS 55 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A NE2 HIS 57 A HIS 57 1_555 D MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc5 D MN MN . A MN 301 1_555 K O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc6 B ND1 HIS 39 B HIS 39 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 B OD1 ASP 42 B ASP 42 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc8 B NE2 HIS 55 B HIS 55 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 B NE2 HIS 57 B HIS 57 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc10 G MN MN . B MN 301 1_555 L O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 C ND1 HIS 39 C HIS 39 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc12 C OD1 ASP 42 C ASP 42 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc13 C NE2 HIS 55 C HIS 55 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc14 C NE2 HIS 57 C HIS 57 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc15 C O ASP 129 C ASP 129 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc16 C O VAL 132 C VAL 132 1_555 J MG MG . C MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc17 I MN MN . C MN 301 1_555 M O HOH . C HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc18 J MG MG . C MG 302 1_555 M O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc19 J MG MG . C MG 302 1_555 M O HOH . C HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc20 J MG MG . C MG 302 1_555 M O HOH . C HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc21 J MG MG . C MG 302 1_555 M O HOH . C HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3DKX _atom_sites.fract_transf_matrix[1][1] 0.011681 _atom_sites.fract_transf_matrix[1][2] 0.006744 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 301 301 MN MN . E 3 CL A 1 211 211 CL CL . F 3 CL A 1 212 212 CL CL . G 2 MN B 1 301 301 MN MN . H 3 CL B 1 211 211 CL CL . I 2 MN C 1 301 301 MN MN . J 4 MG C 1 302 302 MG MG . K 5 HOH A 1 302 302 HOH HOH . K 5 HOH A 2 303 303 HOH HOH . K 5 HOH A 3 305 305 HOH HOH . K 5 HOH A 4 306 306 HOH HOH . K 5 HOH A 5 307 307 HOH HOH . K 5 HOH A 6 308 308 HOH HOH . K 5 HOH A 7 309 309 HOH HOH . K 5 HOH A 8 310 310 HOH HOH . K 5 HOH A 9 311 311 HOH HOH . K 5 HOH A 10 312 312 HOH HOH . K 5 HOH A 11 313 313 HOH HOH . K 5 HOH A 12 315 315 HOH HOH . K 5 HOH A 13 317 317 HOH HOH . K 5 HOH A 14 318 318 HOH HOH . K 5 HOH A 15 320 320 HOH HOH . K 5 HOH A 16 321 321 HOH HOH . K 5 HOH A 17 323 323 HOH HOH . K 5 HOH A 18 324 324 HOH HOH . K 5 HOH A 19 326 326 HOH HOH . K 5 HOH A 20 327 327 HOH HOH . K 5 HOH A 21 328 328 HOH HOH . K 5 HOH A 22 329 329 HOH HOH . K 5 HOH A 23 330 330 HOH HOH . K 5 HOH A 24 331 331 HOH HOH . K 5 HOH A 25 332 332 HOH HOH . L 5 HOH B 1 302 302 HOH HOH . L 5 HOH B 2 303 303 HOH HOH . L 5 HOH B 3 304 304 HOH HOH . L 5 HOH B 4 305 305 HOH HOH . L 5 HOH B 5 306 306 HOH HOH . L 5 HOH B 6 307 307 HOH HOH . L 5 HOH B 7 308 308 HOH HOH . L 5 HOH B 8 309 309 HOH HOH . L 5 HOH B 9 311 311 HOH HOH . L 5 HOH B 10 312 312 HOH HOH . L 5 HOH B 11 313 313 HOH HOH . L 5 HOH B 12 315 315 HOH HOH . L 5 HOH B 13 316 316 HOH HOH . L 5 HOH B 14 317 317 HOH HOH . L 5 HOH B 15 319 319 HOH HOH . L 5 HOH B 16 320 320 HOH HOH . L 5 HOH B 17 321 321 HOH HOH . L 5 HOH B 18 322 322 HOH HOH . L 5 HOH B 19 323 323 HOH HOH . L 5 HOH B 20 324 324 HOH HOH . L 5 HOH B 21 325 325 HOH HOH . L 5 HOH B 22 326 326 HOH HOH . L 5 HOH B 23 327 327 HOH HOH . L 5 HOH B 24 330 330 HOH HOH . L 5 HOH B 25 331 331 HOH HOH . L 5 HOH B 26 332 332 HOH HOH . L 5 HOH B 27 334 334 HOH HOH . L 5 HOH B 28 335 335 HOH HOH . L 5 HOH B 29 336 336 HOH HOH . L 5 HOH B 30 338 338 HOH HOH . L 5 HOH B 31 339 339 HOH HOH . L 5 HOH B 32 340 340 HOH HOH . L 5 HOH B 33 341 341 HOH HOH . L 5 HOH B 34 342 342 HOH HOH . L 5 HOH B 35 343 343 HOH HOH . L 5 HOH B 36 344 344 HOH HOH . L 5 HOH B 37 345 345 HOH HOH . L 5 HOH B 38 346 346 HOH HOH . L 5 HOH B 39 347 347 HOH HOH . L 5 HOH B 40 349 349 HOH HOH . L 5 HOH B 41 350 350 HOH HOH . L 5 HOH B 42 352 352 HOH HOH . L 5 HOH B 43 353 353 HOH HOH . L 5 HOH B 44 355 355 HOH HOH . L 5 HOH B 45 356 356 HOH HOH . L 5 HOH B 46 357 357 HOH HOH . L 5 HOH B 47 358 358 HOH HOH . M 5 HOH C 1 303 303 HOH HOH . M 5 HOH C 2 304 304 HOH HOH . M 5 HOH C 3 305 305 HOH HOH . M 5 HOH C 4 306 306 HOH HOH . M 5 HOH C 5 307 307 HOH HOH . M 5 HOH C 6 308 308 HOH HOH . M 5 HOH C 7 309 309 HOH HOH . M 5 HOH C 8 310 310 HOH HOH . M 5 HOH C 9 311 311 HOH HOH . M 5 HOH C 10 312 312 HOH HOH . M 5 HOH C 11 313 313 HOH HOH . M 5 HOH C 12 314 314 HOH HOH . M 5 HOH C 13 315 315 HOH HOH . M 5 HOH C 14 317 317 HOH HOH . M 5 HOH C 15 318 318 HOH HOH . M 5 HOH C 16 319 319 HOH HOH . M 5 HOH C 17 320 320 HOH HOH . M 5 HOH C 18 321 321 HOH HOH . M 5 HOH C 19 322 322 HOH HOH . M 5 HOH C 20 325 325 HOH HOH . M 5 HOH C 21 326 326 HOH HOH . M 5 HOH C 22 327 327 HOH HOH . M 5 HOH C 23 328 325 HOH HOH . M 5 HOH C 24 329 329 HOH HOH . M 5 HOH C 25 332 332 HOH HOH . M 5 HOH C 26 333 333 HOH HOH . M 5 HOH C 27 334 334 HOH HOH . M 5 HOH C 28 336 336 HOH HOH . M 5 HOH C 29 337 337 HOH HOH . M 5 HOH C 30 338 338 HOH HOH . M 5 HOH C 31 339 339 HOH HOH . M 5 HOH C 32 340 340 HOH HOH . M 5 HOH C 33 341 341 HOH HOH . M 5 HOH C 34 342 342 HOH HOH . M 5 HOH C 35 343 343 HOH HOH . M 5 HOH C 36 344 344 HOH HOH . M 5 HOH C 37 345 345 HOH HOH . M 5 HOH C 38 346 346 HOH HOH . M 5 HOH C 39 347 347 HOH HOH . M 5 HOH C 40 348 348 HOH HOH . M 5 HOH C 41 350 350 HOH HOH . M 5 HOH C 42 351 351 HOH HOH . M 5 HOH C 43 352 352 HOH HOH . M 5 HOH C 44 354 354 HOH HOH . M 5 HOH C 45 355 355 HOH HOH . M 5 HOH C 46 356 356 HOH HOH . M 5 HOH C 47 357 357 HOH HOH . M 5 HOH C 48 358 358 HOH HOH . M 5 HOH C 49 359 359 HOH HOH . M 5 HOH C 50 360 360 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.975 _atom_site.Cartn_y 27.256 _atom_site.Cartn_z -30.38 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 211 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #