data_3DL6 # _model_server_result.job_id fJImxekWBWr-cQTPOjzRbg _model_server_result.datetime_utc '2024-11-14 04:55:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dl6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":608}' # _entry.id 3DL6 # _exptl.entry_id 3DL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.94 _cell.angle_gamma 90 _cell.entry_id 3DL6 _cell.length_a 214.906 _cell.length_b 116.921 _cell.length_c 220.948 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,N,O,P,Q,R,S,T,U,BA,CA 1 1 A,B,F,G,H,I,J,K,L,M,Z,AA 2 1 E,V,W,X,Y,DA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_457 -x-1,y,-z+2 -1 0 0 0 1 0 0 0 -1 -260.636467 0 439.523377 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 O N N ? 3 S N N ? 3 W N N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 3DL6 _atom_sites.fract_transf_matrix[1][1] 0.004653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000484 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008553 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 UMP A 1 603 603 UMP UMP . G 3 CB3 A 1 604 604 CB3 CB3 . H 4 DHF A 1 605 605 DHF DHF . I 5 NDP A 1 606 606 NDP NDP . J 2 UMP B 1 607 607 UMP UMP . K 3 CB3 B 1 608 608 CB3 CB3 . L 4 DHF B 1 609 609 DHF DHF . M 5 NDP B 1 610 610 NDP NDP . N 2 UMP C 1 611 611 UMP UMP . O 3 CB3 C 1 612 612 CB3 CB3 . P 4 DHF C 1 613 613 DHF DHF . Q 5 NDP C 1 614 614 NDP NDP . R 2 UMP D 1 615 615 UMP UMP . S 3 CB3 D 1 616 616 CB3 CB3 . T 4 DHF D 1 617 617 DHF DHF . U 5 NDP D 1 618 618 NDP NDP . V 2 UMP E 1 619 619 UMP UMP . W 3 CB3 E 1 620 620 CB3 CB3 . X 4 DHF E 1 621 621 DHF DHF . Y 5 NDP E 1 622 622 NDP NDP . Z 6 HOH A 1 607 1 HOH HOH . Z 6 HOH A 2 608 9 HOH HOH . Z 6 HOH A 3 609 10 HOH HOH . Z 6 HOH A 4 610 15 HOH HOH . Z 6 HOH A 5 611 17 HOH HOH . Z 6 HOH A 6 612 19 HOH HOH . Z 6 HOH A 7 613 22 HOH HOH . Z 6 HOH A 8 614 23 HOH HOH . Z 6 HOH A 9 615 25 HOH HOH . Z 6 HOH A 10 616 27 HOH HOH . Z 6 HOH A 11 617 28 HOH HOH . Z 6 HOH A 12 618 29 HOH HOH . Z 6 HOH A 13 619 33 HOH HOH . Z 6 HOH A 14 620 37 HOH HOH . Z 6 HOH A 15 621 47 HOH HOH . Z 6 HOH A 16 622 48 HOH HOH . Z 6 HOH A 17 623 50 HOH HOH . Z 6 HOH A 18 624 58 HOH HOH . Z 6 HOH A 19 625 61 HOH HOH . Z 6 HOH A 20 626 63 HOH HOH . Z 6 HOH A 21 627 64 HOH HOH . Z 6 HOH A 22 628 68 HOH HOH . Z 6 HOH A 23 629 78 HOH HOH . Z 6 HOH A 24 630 101 HOH HOH . Z 6 HOH A 25 631 109 HOH HOH . Z 6 HOH A 26 632 114 HOH HOH . Z 6 HOH A 27 633 117 HOH HOH . Z 6 HOH A 28 634 118 HOH HOH . Z 6 HOH A 29 635 123 HOH HOH . Z 6 HOH A 30 636 126 HOH HOH . Z 6 HOH A 31 637 130 HOH HOH . Z 6 HOH A 32 638 132 HOH HOH . Z 6 HOH A 33 639 141 HOH HOH . Z 6 HOH A 34 640 149 HOH HOH . Z 6 HOH A 35 641 168 HOH HOH . AA 6 HOH B 1 611 3 HOH HOH . AA 6 HOH B 2 612 4 HOH HOH . AA 6 HOH B 3 613 5 HOH HOH . AA 6 HOH B 4 614 8 HOH HOH . AA 6 HOH B 5 615 11 HOH HOH . AA 6 HOH B 6 616 12 HOH HOH . AA 6 HOH B 7 617 13 HOH HOH . AA 6 HOH B 8 618 16 HOH HOH . AA 6 HOH B 9 619 20 HOH HOH . AA 6 HOH B 10 620 24 HOH HOH . AA 6 HOH B 11 621 30 HOH HOH . AA 6 HOH B 12 622 34 HOH HOH . AA 6 HOH B 13 623 35 HOH HOH . AA 6 HOH B 14 624 38 HOH HOH . AA 6 HOH B 15 625 52 HOH HOH . AA 6 HOH B 16 626 53 HOH HOH . AA 6 HOH B 17 627 54 HOH HOH . AA 6 HOH B 18 628 55 HOH HOH . AA 6 HOH B 19 629 57 HOH HOH . AA 6 HOH B 20 630 59 HOH HOH . AA 6 HOH B 21 631 60 HOH HOH . AA 6 HOH B 22 632 65 HOH HOH . AA 6 HOH B 23 633 67 HOH HOH . AA 6 HOH B 24 634 73 HOH HOH . AA 6 HOH B 25 635 74 HOH HOH . AA 6 HOH B 26 636 75 HOH HOH . AA 6 HOH B 27 637 77 HOH HOH . AA 6 HOH B 28 638 79 HOH HOH . AA 6 HOH B 29 639 80 HOH HOH . AA 6 HOH B 30 640 82 HOH HOH . AA 6 HOH B 31 641 87 HOH HOH . AA 6 HOH B 32 642 88 HOH HOH . AA 6 HOH B 33 643 89 HOH HOH . AA 6 HOH B 34 644 91 HOH HOH . AA 6 HOH B 35 645 97 HOH HOH . AA 6 HOH B 36 646 98 HOH HOH . AA 6 HOH B 37 647 103 HOH HOH . AA 6 HOH B 38 648 106 HOH HOH . AA 6 HOH B 39 649 110 HOH HOH . AA 6 HOH B 40 650 119 HOH HOH . AA 6 HOH B 41 651 122 HOH HOH . AA 6 HOH B 42 652 127 HOH HOH . AA 6 HOH B 43 653 136 HOH HOH . AA 6 HOH B 44 654 139 HOH HOH . AA 6 HOH B 45 655 146 HOH HOH . AA 6 HOH B 46 656 152 HOH HOH . AA 6 HOH B 47 657 155 HOH HOH . AA 6 HOH B 48 658 159 HOH HOH . BA 6 HOH C 1 615 7 HOH HOH . BA 6 HOH C 2 616 18 HOH HOH . BA 6 HOH C 3 617 21 HOH HOH . BA 6 HOH C 4 618 26 HOH HOH . BA 6 HOH C 5 619 45 HOH HOH . BA 6 HOH C 6 620 46 HOH HOH . BA 6 HOH C 7 621 51 HOH HOH . BA 6 HOH C 8 622 62 HOH HOH . BA 6 HOH C 9 623 66 HOH HOH . BA 6 HOH C 10 624 81 HOH HOH . BA 6 HOH C 11 625 104 HOH HOH . BA 6 HOH C 12 626 105 HOH HOH . BA 6 HOH C 13 627 108 HOH HOH . BA 6 HOH C 14 628 120 HOH HOH . BA 6 HOH C 15 629 124 HOH HOH . BA 6 HOH C 16 630 125 HOH HOH . BA 6 HOH C 17 631 131 HOH HOH . BA 6 HOH C 18 632 134 HOH HOH . BA 6 HOH C 19 633 135 HOH HOH . BA 6 HOH C 20 634 137 HOH HOH . BA 6 HOH C 21 635 140 HOH HOH . BA 6 HOH C 22 636 164 HOH HOH . CA 6 HOH D 1 619 2 HOH HOH . CA 6 HOH D 2 620 31 HOH HOH . CA 6 HOH D 3 621 32 HOH HOH . CA 6 HOH D 4 622 40 HOH HOH . CA 6 HOH D 5 623 41 HOH HOH . CA 6 HOH D 6 624 42 HOH HOH . CA 6 HOH D 7 625 44 HOH HOH . CA 6 HOH D 8 626 56 HOH HOH . CA 6 HOH D 9 627 69 HOH HOH . CA 6 HOH D 10 628 70 HOH HOH . CA 6 HOH D 11 629 84 HOH HOH . CA 6 HOH D 12 630 90 HOH HOH . CA 6 HOH D 13 631 92 HOH HOH . CA 6 HOH D 14 632 94 HOH HOH . CA 6 HOH D 15 633 102 HOH HOH . CA 6 HOH D 16 634 113 HOH HOH . CA 6 HOH D 17 635 121 HOH HOH . CA 6 HOH D 18 636 128 HOH HOH . CA 6 HOH D 19 637 133 HOH HOH . CA 6 HOH D 20 638 144 HOH HOH . CA 6 HOH D 21 639 145 HOH HOH . CA 6 HOH D 22 640 167 HOH HOH . CA 6 HOH D 23 641 172 HOH HOH . DA 6 HOH E 1 623 6 HOH HOH . DA 6 HOH E 2 624 14 HOH HOH . DA 6 HOH E 3 625 36 HOH HOH . DA 6 HOH E 4 626 49 HOH HOH . DA 6 HOH E 5 627 71 HOH HOH . DA 6 HOH E 6 628 72 HOH HOH . DA 6 HOH E 7 629 76 HOH HOH . DA 6 HOH E 8 630 83 HOH HOH . DA 6 HOH E 9 631 85 HOH HOH . DA 6 HOH E 10 632 95 HOH HOH . DA 6 HOH E 11 633 99 HOH HOH . DA 6 HOH E 12 634 100 HOH HOH . DA 6 HOH E 13 635 111 HOH HOH . DA 6 HOH E 14 636 129 HOH HOH . DA 6 HOH E 15 637 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . K 3 -77.546 98.187 101.92 1 63.66 ? N1 CB3 608 B 1 HETATM 2 C C2 CB3 . . . K 3 -78.506 97.219 102.144 1 50.67 ? C2 CB3 608 B 1 HETATM 3 N NA2 CB3 . . . K 3 -79.531 97.095 101.305 1 63.66 ? NA2 CB3 608 B 1 HETATM 4 N N3 CB3 . . . K 3 -78.404 96.381 103.234 1 63.66 ? N3 CB3 608 B 1 HETATM 5 C C4 CB3 . . . K 3 -77.342 96.505 104.108 1 52.46 ? C4 CB3 608 B 1 HETATM 6 O O4 CB3 . . . K 3 -77.212 95.708 105.036 1 63.66 ? O4 CB3 608 B 1 HETATM 7 C C4A CB3 . . . K 3 -76.374 97.477 103.887 1 51.22 ? C4A CB3 608 B 1 HETATM 8 C C5 CB3 . . . K 3 -75.303 97.608 104.762 1 52.29 ? C5 CB3 608 B 1 HETATM 9 C C6 CB3 . . . K 3 -74.338 98.582 104.537 1 48.28 ? C6 CB3 608 B 1 HETATM 10 C C7 CB3 . . . K 3 -74.444 99.425 103.436 1 49.48 ? C7 CB3 608 B 1 HETATM 11 C C8 CB3 . . . K 3 -75.516 99.294 102.561 1 48.99 ? C8 CB3 608 B 1 HETATM 12 C C8A CB3 . . . K 3 -76.481 98.319 102.787 1 45.99 ? C8A CB3 608 B 1 HETATM 13 C C9 CB3 . . . K 3 -73.172 98.725 105.487 1 46.71 ? C9 CB3 608 B 1 HETATM 14 N N10 CB3 . . . K 3 -73.06 97.528 106.297 1 63.66 ? N10 CB3 608 B 1 HETATM 15 C C11 CB3 . . . K 3 -72.712 93.77 104.453 1 47.79 ? C11 CB3 608 B 1 HETATM 16 C C12 CB3 . . . K 3 -72.719 93.866 105.84 1 48.4 ? C12 CB3 608 B 1 HETATM 17 C C13 CB3 . . . K 3 -72.834 95.109 106.45 1 46.8 ? C13 CB3 608 B 1 HETATM 18 C C14 CB3 . . . K 3 -72.942 96.257 105.674 1 44.79 ? C14 CB3 608 B 1 HETATM 19 C C15 CB3 . . . K 3 -72.936 96.162 104.287 1 46.83 ? C15 CB3 608 B 1 HETATM 20 C C16 CB3 . . . K 3 -72.821 94.918 103.676 1 47.45 ? C16 CB3 608 B 1 HETATM 21 C C CB3 . . . K 3 -72.589 92.428 103.794 1 47.62 ? C CB3 608 B 1 HETATM 22 O O CB3 . . . K 3 -72.825 92.32 102.51 1 63.66 ? O CB3 608 B 1 HETATM 23 N N CB3 . . . K 3 -72.24 91.38 104.535 1 63.66 ? N CB3 608 B 1 HETATM 24 C CA CB3 . . . K 3 -72.104 90.057 103.957 1 50.01 ? CA CB3 608 B 1 HETATM 25 C CB CB3 . . . K 3 -70.686 89.86 103.434 1 46.93 ? CB CB3 608 B 1 HETATM 26 C CG CB3 . . . K 3 -69.781 89.278 104.515 1 48.29 ? CG CB3 608 B 1 HETATM 27 C CD CB3 . . . K 3 -68.338 89.425 104.095 1 55.72 ? CD CB3 608 B 1 HETATM 28 O OE1 CB3 . . . K 3 -67.943 90.473 103.539 1 63.66 ? OE1 CB3 608 B 1 HETATM 29 O OE2 CB3 . . . K 3 -67.522 88.501 104.298 1 63.66 ? OE2 CB3 608 B 1 HETATM 30 C CT CB3 . . . K 3 -72.422 88.984 104.955 1 51.9 ? CT CB3 608 B 1 HETATM 31 O O1 CB3 . . . K 3 -72.161 89.141 106.168 1 63.66 ? O1 CB3 608 B 1 HETATM 32 O O2 CB3 . . . K 3 -72.954 87.916 104.582 1 63.66 ? O2 CB3 608 B 1 HETATM 33 C CP1 CB3 . . . K 3 -73.067 97.627 107.744 1 51.18 ? CP1 CB3 608 B 1 HETATM 34 C CP2 CB3 . . . K 3 -74.411 97.19 108.273 1 48.71 ? CP2 CB3 608 B 1 HETATM 35 C CP3 CB3 . . . K 3 -75.48 96.842 108.693 1 47.29 ? CP3 CB3 608 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #