data_3DLH # _model_server_result.job_id ddXxC7oVTwuwLP5Lpz74Bg _model_server_result.datetime_utc '2024-11-15 23:55:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":687}' # _entry.id 3DLH # _exptl.entry_id 3DLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DLH _cell.length_a 74.744 _cell.length_b 114.629 _cell.length_c 175.689 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,K,M,O 1 1 B,D,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT VAL 685 A VAL 685 1_555 E MG MG . A MG 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 E MG MG . A MG 686 1_555 C OP1 DT 1 X DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 E MG MG . A MG 686 1_555 C OP1 DA 3 X DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 B OXT VAL 685 B VAL 685 1_555 L MG MG . Y MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 L MG MG . Y MG 2 1_555 D OP2 DT 1 Y DT 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 L MG MG . Y MG 2 1_555 D OP1 DA 3 Y DA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 3DLH _atom_sites.fract_transf_matrix[1][1] 0.013379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 686 686 MG MG . F 3 MG A 1 687 687 MG MG . G 4 PGE A 1 688 688 PGE PGE . H 5 PO4 A 1 689 689 PO4 PO4 . I 6 ACY B 1 686 686 ACY ACY . J 6 ACY B 1 687 687 ACY ACY . K 5 PO4 X 1 22 22 PO4 PO4 . L 3 MG Y 1 2 2 MG MG . M 7 HOH A 1 691 691 HOH HOH . M 7 HOH A 2 692 692 HOH HOH . M 7 HOH A 3 693 693 HOH HOH . M 7 HOH A 4 694 694 HOH HOH . M 7 HOH A 5 695 695 HOH HOH . M 7 HOH A 6 696 696 HOH HOH . M 7 HOH A 7 697 697 HOH HOH . M 7 HOH A 8 698 698 HOH HOH . M 7 HOH A 9 699 699 HOH HOH . M 7 HOH A 10 700 700 HOH HOH . M 7 HOH A 11 701 701 HOH HOH . M 7 HOH A 12 702 702 HOH HOH . M 7 HOH A 13 703 703 HOH HOH . M 7 HOH A 14 704 704 HOH HOH . M 7 HOH A 15 705 705 HOH HOH . M 7 HOH A 16 706 706 HOH HOH . M 7 HOH A 17 707 707 HOH HOH . M 7 HOH A 18 708 708 HOH HOH . M 7 HOH A 19 709 709 HOH HOH . M 7 HOH A 20 711 711 HOH HOH . M 7 HOH A 21 712 712 HOH HOH . M 7 HOH A 22 713 713 HOH HOH . M 7 HOH A 23 714 714 HOH HOH . M 7 HOH A 24 715 715 HOH HOH . M 7 HOH A 25 716 716 HOH HOH . M 7 HOH A 26 717 717 HOH HOH . M 7 HOH A 27 718 718 HOH HOH . M 7 HOH A 28 719 719 HOH HOH . M 7 HOH A 29 720 720 HOH HOH . M 7 HOH A 30 721 721 HOH HOH . M 7 HOH A 31 722 722 HOH HOH . M 7 HOH A 32 723 723 HOH HOH . M 7 HOH A 33 724 724 HOH HOH . M 7 HOH A 34 725 725 HOH HOH . M 7 HOH A 35 726 726 HOH HOH . M 7 HOH A 36 727 727 HOH HOH . M 7 HOH A 37 728 728 HOH HOH . M 7 HOH A 38 729 729 HOH HOH . M 7 HOH A 39 730 730 HOH HOH . N 7 HOH B 1 690 690 HOH HOH . N 7 HOH B 2 691 691 HOH HOH . N 7 HOH B 3 692 692 HOH HOH . N 7 HOH B 4 693 693 HOH HOH . N 7 HOH B 5 694 694 HOH HOH . N 7 HOH B 6 695 695 HOH HOH . N 7 HOH B 7 696 696 HOH HOH . N 7 HOH B 8 697 697 HOH HOH . N 7 HOH B 9 698 698 HOH HOH . N 7 HOH B 10 699 699 HOH HOH . N 7 HOH B 11 700 700 HOH HOH . N 7 HOH B 12 701 701 HOH HOH . N 7 HOH B 13 702 702 HOH HOH . N 7 HOH B 14 703 703 HOH HOH . N 7 HOH B 15 704 704 HOH HOH . N 7 HOH B 16 705 705 HOH HOH . N 7 HOH B 17 706 706 HOH HOH . N 7 HOH B 18 707 707 HOH HOH . N 7 HOH B 19 708 708 HOH HOH . N 7 HOH B 20 709 709 HOH HOH . N 7 HOH B 21 710 710 HOH HOH . N 7 HOH B 22 711 711 HOH HOH . N 7 HOH B 23 712 712 HOH HOH . N 7 HOH B 24 713 713 HOH HOH . N 7 HOH B 25 714 714 HOH HOH . N 7 HOH B 26 715 715 HOH HOH . N 7 HOH B 27 716 716 HOH HOH . N 7 HOH B 28 717 717 HOH HOH . N 7 HOH B 29 718 718 HOH HOH . N 7 HOH B 30 719 719 HOH HOH . N 7 HOH B 31 720 720 HOH HOH . N 7 HOH B 32 721 721 HOH HOH . N 7 HOH B 33 722 722 HOH HOH . N 7 HOH B 34 723 723 HOH HOH . N 7 HOH B 35 724 724 HOH HOH . O 7 HOH X 1 23 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . J 6 -1.88 3.257 44.896 1 61.15 ? C ACY 687 B 1 HETATM 2 O O ACY . . . J 6 -1.214 4.34 44.263 1 60.75 ? O ACY 687 B 1 HETATM 3 O OXT ACY . . . J 6 -1.967 3.213 46.228 1 62.77 ? OXT ACY 687 B 1 HETATM 4 C CH3 ACY . . . J 6 -2.488 2.16 44.084 1 61.4 ? CH3 ACY 687 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #