data_3DLH # _model_server_result.job_id sVJQMM4OpMpnflwhvTJg-Q _model_server_result.datetime_utc '2024-11-15 23:31:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3dlh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":688}' # _entry.id 3DLH # _exptl.entry_id 3DLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3DLH _cell.length_a 74.744 _cell.length_b 114.629 _cell.length_c 175.689 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3DLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,K,M,O 1 1 B,D,I,J,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OXT VAL 685 A VAL 685 1_555 E MG MG . A MG 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 E MG MG . A MG 686 1_555 C OP1 DT 1 X DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 E MG MG . A MG 686 1_555 C OP1 DA 3 X DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc4 B OXT VAL 685 B VAL 685 1_555 L MG MG . Y MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 L MG MG . Y MG 2 1_555 D OP2 DT 1 Y DT 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc6 L MG MG . Y MG 2 1_555 D OP1 DA 3 Y DA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 358 n n C1 C2 PGE sing 359 n n C1 H1 PGE sing 360 n n C1 H12 PGE sing 361 n n O1 HO1 PGE sing 362 n n C2 O2 PGE sing 363 n n C2 H2 PGE sing 364 n n C2 H22 PGE sing 365 n n O2 C3 PGE sing 366 n n C3 C4 PGE sing 367 n n C3 H3 PGE sing 368 n n C3 H32 PGE sing 369 n n C4 O3 PGE sing 370 n n C4 H4 PGE sing 371 n n C4 H42 PGE sing 372 n n O4 C6 PGE sing 373 n n O4 HO4 PGE sing 374 n n C6 C5 PGE sing 375 n n C6 H6 PGE sing 376 n n C6 H62 PGE sing 377 n n C5 O3 PGE sing 378 n n C5 H5 PGE sing 379 n n C5 H52 PGE sing 380 n n # _atom_sites.entry_id 3DLH _atom_sites.fract_transf_matrix[1][1] 0.013379 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 686 686 MG MG . F 3 MG A 1 687 687 MG MG . G 4 PGE A 1 688 688 PGE PGE . H 5 PO4 A 1 689 689 PO4 PO4 . I 6 ACY B 1 686 686 ACY ACY . J 6 ACY B 1 687 687 ACY ACY . K 5 PO4 X 1 22 22 PO4 PO4 . L 3 MG Y 1 2 2 MG MG . M 7 HOH A 1 691 691 HOH HOH . M 7 HOH A 2 692 692 HOH HOH . M 7 HOH A 3 693 693 HOH HOH . M 7 HOH A 4 694 694 HOH HOH . M 7 HOH A 5 695 695 HOH HOH . M 7 HOH A 6 696 696 HOH HOH . M 7 HOH A 7 697 697 HOH HOH . M 7 HOH A 8 698 698 HOH HOH . M 7 HOH A 9 699 699 HOH HOH . M 7 HOH A 10 700 700 HOH HOH . M 7 HOH A 11 701 701 HOH HOH . M 7 HOH A 12 702 702 HOH HOH . M 7 HOH A 13 703 703 HOH HOH . M 7 HOH A 14 704 704 HOH HOH . M 7 HOH A 15 705 705 HOH HOH . M 7 HOH A 16 706 706 HOH HOH . M 7 HOH A 17 707 707 HOH HOH . M 7 HOH A 18 708 708 HOH HOH . M 7 HOH A 19 709 709 HOH HOH . M 7 HOH A 20 711 711 HOH HOH . M 7 HOH A 21 712 712 HOH HOH . M 7 HOH A 22 713 713 HOH HOH . M 7 HOH A 23 714 714 HOH HOH . M 7 HOH A 24 715 715 HOH HOH . M 7 HOH A 25 716 716 HOH HOH . M 7 HOH A 26 717 717 HOH HOH . M 7 HOH A 27 718 718 HOH HOH . M 7 HOH A 28 719 719 HOH HOH . M 7 HOH A 29 720 720 HOH HOH . M 7 HOH A 30 721 721 HOH HOH . M 7 HOH A 31 722 722 HOH HOH . M 7 HOH A 32 723 723 HOH HOH . M 7 HOH A 33 724 724 HOH HOH . M 7 HOH A 34 725 725 HOH HOH . M 7 HOH A 35 726 726 HOH HOH . M 7 HOH A 36 727 727 HOH HOH . M 7 HOH A 37 728 728 HOH HOH . M 7 HOH A 38 729 729 HOH HOH . M 7 HOH A 39 730 730 HOH HOH . N 7 HOH B 1 690 690 HOH HOH . N 7 HOH B 2 691 691 HOH HOH . N 7 HOH B 3 692 692 HOH HOH . N 7 HOH B 4 693 693 HOH HOH . N 7 HOH B 5 694 694 HOH HOH . N 7 HOH B 6 695 695 HOH HOH . N 7 HOH B 7 696 696 HOH HOH . N 7 HOH B 8 697 697 HOH HOH . N 7 HOH B 9 698 698 HOH HOH . N 7 HOH B 10 699 699 HOH HOH . N 7 HOH B 11 700 700 HOH HOH . N 7 HOH B 12 701 701 HOH HOH . N 7 HOH B 13 702 702 HOH HOH . N 7 HOH B 14 703 703 HOH HOH . N 7 HOH B 15 704 704 HOH HOH . N 7 HOH B 16 705 705 HOH HOH . N 7 HOH B 17 706 706 HOH HOH . N 7 HOH B 18 707 707 HOH HOH . N 7 HOH B 19 708 708 HOH HOH . N 7 HOH B 20 709 709 HOH HOH . N 7 HOH B 21 710 710 HOH HOH . N 7 HOH B 22 711 711 HOH HOH . N 7 HOH B 23 712 712 HOH HOH . N 7 HOH B 24 713 713 HOH HOH . N 7 HOH B 25 714 714 HOH HOH . N 7 HOH B 26 715 715 HOH HOH . N 7 HOH B 27 716 716 HOH HOH . N 7 HOH B 28 717 717 HOH HOH . N 7 HOH B 29 718 718 HOH HOH . N 7 HOH B 30 719 719 HOH HOH . N 7 HOH B 31 720 720 HOH HOH . N 7 HOH B 32 721 721 HOH HOH . N 7 HOH B 33 722 722 HOH HOH . N 7 HOH B 34 723 723 HOH HOH . N 7 HOH B 35 724 724 HOH HOH . O 7 HOH X 1 23 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . G 4 -7.033 18.077 17.318 1 108.17 ? C1 PGE 688 A 1 HETATM 2 O O1 PGE . . . G 4 -6.346 16.874 17.671 1 108.02 ? O1 PGE 688 A 1 HETATM 3 C C2 PGE . . . G 4 -7.797 18.607 18.534 1 108.24 ? C2 PGE 688 A 1 HETATM 4 O O2 PGE . . . G 4 -8.969 17.816 18.755 1 107.89 ? O2 PGE 688 A 1 HETATM 5 C C3 PGE . . . G 4 -9.619 18.368 19.902 1 107.57 ? C3 PGE 688 A 1 HETATM 6 C C4 PGE . . . G 4 -10.889 17.575 20.207 1 107.13 ? C4 PGE 688 A 1 HETATM 7 O O4 PGE . . . G 4 -13.309 15.844 23.747 1 102.02 ? O4 PGE 688 A 1 HETATM 8 C C6 PGE . . . G 4 -12.86 17.111 23.271 1 103.44 ? C6 PGE 688 A 1 HETATM 9 C C5 PGE . . . G 4 -12.429 16.98 21.81 1 104.92 ? C5 PGE 688 A 1 HETATM 10 O O3 PGE . . . G 4 -11.234 17.737 21.589 1 106.4 ? O3 PGE 688 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #